BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18800.1
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492979 jgi|Araly1|492979|fgenesh2_kg.7__2412__AT4G18800.1 1517 0.0
Ahg496120 jgi|Araly1|496120|fgenesh2_kg.8__1936__AT5G59840.1 65.8 7e-10
> Ahg492979 jgi|Araly1|492979|fgenesh2_kg.7__2412__AT4G18800.1
Length=1097
Score = 1517 bits (821), Expect = 0.0
Identities = 974/1043 (93%), Gaps = 30/1043 (3%)
Strand=Plus/Plus
Query 1 AGCTAGAAAGACACCAGTCTTACCCTAACTTTTTTCAAAGTCTGTGTCTTTCTGTAGAAA 60
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1 AGCTAGAAAGACACCAGTCTTACCCTAACTTTATTCAAAGTCTCTGTCTTTCTGTAGAAA 60
Query 61 TCTGAGGAATAAAT-ATTTGAATCTAAAGAGAATAAAGAAGAAAGTAAAAAAGCAAAATC 119
|||| || | |||| |||||||||||||||| | ||| ||| ||| | ||||||||||
Sbjct 61 TCTG-GG-A-AAATAATTTGAATCTAAAGAG-A-AAA-AAG-AAG---AGAAGCAAAATC 110
Query 120 GAAGTTTTGTTCAATTTTCTGGGATCATAGAGCAATTTTCGTTTCTTTATTCGTTGAAAG 179
|||| || || | |||||||| |||||||||||| |||||||||| || |||||
Sbjct 111 GAAG---TG---AA-GGTGTGGGATCAAAGAGCAATTTTCTTTTCTTTATTGGTAGAAAG 163
Query 180 TGTGAAGCTTTTTTGATTCAGTGAGAAGTGTTAATGGCGGGTTACAGAGCAGATGATGAT 239
|||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 164 TGTGAAGC-TTTTTGATTTAGTGAGAAGTGTTAATGGCGGGTTACAGAGCTGATGATGAT 222
Query 240 TACGATTACCTATTCAAGGTGGTTCTGATCGGTGATTCAGGTGTTGGAAAGTCCAATTTG 299
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 223 TACGATTACCTTTTCAAGGTGGTTCTGATCGGTGATTCAGGTGTTGGGAAGTCCAATTTG 282
Query 300 CTTTCTCGATTCACCAGGAACGAGTTTAGTCTCGAGTCTAAATCAACGATCGGGGTCGAG 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 283 CTTTCTCGATTCACCAGGAACGAGTTTAGTCTCGAGTCTAAATCAACGATCGGGGTTGAG 342
Query 360 TTCGCGACTCGTAGCTTGAATGTTAATGAAAAAGTCATCAAAGCCCAGATTTGGGACACT 419
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 343 TTCGCGACTCGTAGCTTGAATGTTAATGAAAAAGTTATCAAAGCCCAGATTTGGGATACT 402
Query 420 GCTGGTCAAGAAAGATACCGAGCAATCACTAGTGCTTACTATCGAGGAGCTGTTGGGGCG 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 403 GCTGGTCAAGAAAGATACCGAGCAATCACTAGTGCTTACTACCGAGGAGCTGTTGGGGCG 462
Query 480 CTTCTTGTTTACGACGTAACCCGACACTCAACATTCGAAAACGTTGAGAGATGGCTAAGG 539
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CTTCTTGTCTACGATGTAACCCGACACTCAACATTCGAAAACGTTGAGAGATGGCTAAGG 522
Query 540 GAACTCCGTGACCACACTGACCCAAACATAGTTGTGATGCTTGTGGGAAACAAATCCGAT 599
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GAACTCCGTGACCATACTGACCCAAACATAGTTGTGATGCTTGTGGGAAACAAATCCGAT 582
Query 600 CTTCGCCATCTTGTAGCAGTCCAAACCGAAGATGCAAAATCTTTTGCAGAGAATGAATCA 659
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 583 CTTCGCCATCTTGTGGCAGTCCAAACCGAAGATGCAAAATCTTTTGCGGAGAATGAATCA 642
Query 660 CTCTACTTCATGGAAACCTCAGCTCTTGAATCTACCAATGTTGAGAACGCGTTTTCTGAA 719
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 643 CTCTACTTCATGGAAACCTCAGCTCTTGAATCTACTAATGTTGAGAACGCGTTTTCTGAA 702
Query 720 GTACTCACTCAGATTTACCATGTTGTGAGCAAGAAAGCAATGGAGGCTGGTGAAGATTCC 779
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 703 GTACTCACTCAGATTTACCATGTTGTGAGCAAGAAAGCAATGGAGGCTGGTCAAGATTCG 762
Query 780 GGTAATGTTCCTTCGAAAGGAGAGAAGATCGATGTTGATGTTTCCGCAGTGAAGAAAACT 839
||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 763 GGTAATGTTCCTTCGAAAGGAGAAAAGATCGATGTTGATGTCTCCGCTGTGAAGAAAACC 822
Query 840 GGTTGCTGCTCCAACTAAATGGTCTTATGTCCT-AAAGCTGAAATCGGtttttaaatttt 898
||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||
Sbjct 823 GGTTGCTGCTCCAACTAAAAGGTCTG-TGTCCTCAAAGCTGCAATCGGTTTTTAAATTTT 881
Query 899 acattcaaattttgtttttgaagatgtttgc-tttttttt---AGGAAAACAAACTATGT 954
|||||||| |||| ||||||||||||||||| |||||||| |||||| ||| ||||||
Sbjct 882 ACATTCAATTTTT-TTTTTGAAGATGTTTGCCTTTTTTTTTTTAGGAAA-CAATCTATGT 939
Query 955 TATGCCTTTTGATTTGCTTGTTTGAAAATTGCTTAGCTTTGGTCTGATTCTGTACCGGTT 1014
||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 940 TATGC-TTT-GTTTTGCTTGCTTGAAAATTGCTTAGCTTTGGTCTGATTCTGTACCGGTC 997
Query 1015 AAGGGATTTTGTAATTTAA-CCG 1036
|||||||||||||||| || |||
Sbjct 998 AAGGGATTTTGTAATTCAATCCG 1020
Score = 148 bits (80), Expect = 7e-35
Identities = 90/94 (96%), Gaps = 4/94 (4%)
Strand=Plus/Plus
Query 1055 TTTT-TAATTCAATCCGCAAATATCTCTAAACCAATATTTATTGTGCTAATCCTTGAACA 1113
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TTTTGTAATTCAATCCGCAAATATCTCTAAACCAATATTTATTGTGCTAATCCTTGAACA 1063
Query 1114 CAA---CTAATTTTTGTTATACCAATTTAGAAAA 1144
||| ||||||||||||||||||||||||||||
Sbjct 1064 CAAAAACTAATTTTTGTTATACCAATTTAGAAAA 1097
> Ahg496120 jgi|Araly1|496120|fgenesh2_kg.8__1936__AT5G59840.1
Length=924
Score = 65.8 bits (35), Expect = 7e-10
Identities = 67/82 (82%), Gaps = 3/82 (4%)
Strand=Plus/Plus
Query 389 AAAAGTCATCAAAGC-CCAGATTTGGGACACTGCTGGTCAAGAAAGATACCGAGCAATCA 447
||| || ||| |||| |||||||||||||||||||||||||||| | | ||| | ||||
Sbjct 254 AAACGT-ATC-AAGCTCCAGATTTGGGACACTGCTGGTCAAGAACGTTTTCGAACCATCA 311
Query 448 CTAGTGCTTACTATCGAGGAGC 469
| | |||||| || || |||||
Sbjct 312 CCACTGCTTATTACCGCGGAGC 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42926404542
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5