BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18820.1
Length=3472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492977 jgi|Araly1|492977|fgenesh2_kg.7__2410__AT4G18820.1 2490 0.0
Ahg330841 jgi|Araly1|330841|fgenesh1_pm.C_scaffold_8000184 150 6e-35
> Ahg492977 jgi|Araly1|492977|fgenesh2_kg.7__2410__AT4G18820.1
Length=3514
Score = 2490 bits (1348), Expect = 0.0
Identities = 1486/1553 (96%), Gaps = 8/1553 (1%)
Strand=Plus/Plus
Query 449 ATAGTGGTAGGAGAGTTAAGAGAGAGGAATCTAGTAGAAAGAGTTATAGAATTGGGGATG 508
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 449 ATAGTGGTAGGAGAGTTAAGAGAGATGAATCTAGTAGAAAGAGTTATAGAATTGGGGATG 508
Query 509 ATTATCAAAATGTTAATGAGGTTGTTTCTCATGGTTCGGGATCAAAAGCTAGTAGGAGGC 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 ATTATCAAAATGTTAATGAGGTTGTTTCTCATGGTTCGGGATCAAAAGCTAGTAGGAGGC 568
Query 569 TTAGTAGGGTTAATGATGCTATGGTTAAGACATTGTCTGATCAGTTAAATGAGGTTGTTG 628
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 569 TTAGTAGGGTTAATGATGCTATTGTTAAGACATTGTCTGATCAGTTAAATGAGGTTGTTG 628
Query 629 TTGGTGATAGTGATGATGTGGTTTCATCTAATGTTCGTCCACGGGTTAGGTATGGAGGAG 688
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 629 TGGGTGATAGTGATGATGTGGTTTCATCTAATGTTCGTCCACGGGTTAGGTAT---GGAG 685
Query 689 GTGGTGGTGGTGGTAATACTCGGGGATGTGCGGGTGGAATGAGTCGGCCTAAAAGACGGA 748
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 GTGGTGGTGGTAGTAATACTCGGGGATGTGCGGGTGGAATGAGTCGGCCTAAAAGACGGA 745
Query 749 AGTTTAGAGGGACGAGGAGAGTTCGGGGTAAGAGTAGAGATACTGGTGGTGGTAAGAGTG 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 AGTTTAGAGGGACGAGGAGAGTTCGGGGTAAGAGTAGAGATACTGGTGGTGGTAAGAGTG 805
Query 809 AGATGTCTGTTGCTTCTAACACATTGCCTCAAGTTGAGAAGCATGATGGAGAAAAAGAGG 868
|||||||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||
Sbjct 806 AGATGTCTGTTGCTTCAAACACATTGCCTCAAGGTGAGAAGCATGAGGGAGAAAAGGAGG 865
Query 869 GATTTGGGGAACAGAACATGAC-AAAGGCTTGTGGGATTCCATTTAATTGGTCAAGAATT 927
|||||||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||
Sbjct 866 GATTTGGGGAACAGAACATGACTAAA-GCTTGTGGGATTCCGTTTAATTGGTCGAGAATT 924
Query 928 CATCACCGAGGGAAAACTTTTCTTGATAAGGCGGGTAGGAGTTTGTCTTGTGGTATGTCT 987
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 925 CATCACCGAGGGAAAACTTTTCTCGATAAGGCGGGTAGGAGCTTGTCTTGTGGTATGTCT 984
Query 988 GATTCGAAAGGTGGTAGGAAAGGTGAAACTAATGAGAGAAATGGTTCTGATAAGATGATG 1047
||||| ||| ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 985 GATTC-AAA--AGGTAGGAAAGGTGAAACCAATGAGAGAAATGGTTCTGATATGATGATG 1041
Query 1048 ATACAATCTGATGATGACTCAAGCTCTTTTATCGGCTCTGATGGTGAAGCACTTCCTTTA 1107
|||||||||||||||||||||||||| |||||| ||||||| |||||||||||||| |||
Sbjct 1042 ATACAATCTGATGATGACTCAAGCTCCTTTATCCGCTCTGACGGTGAAGCACTTCCCTTA 1101
Query 1108 CTAGTTGATAGTGGAGAGAATGATGGTTGGGTGCACGATTACTCGGGGGAGCTAGGTATT 1167
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1102 CTAGTTGATAGTGCAGAGAATGATGGTTGGGTGCACGATTACTCGGGGGAGCTAGGGATC 1161
Query 1168 TTTGCAGACAGTCTGCTCAAGAACGATGAGGATTCTGACCTTGCTTCAGAAGGAAGGTCA 1227
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1162 TTTGCAGACAGTCTGCTCAAGAACGATGAAGATTCTGACCTTGCTTCAGAAGGAAGGTCA 1221
Query 1228 GGGGAGAAAAAACACAAAAAGAAGAGCCATGTAAATGCTCGGCATCGACATCGGCAACAG 1287
|||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1222 GGGGAGAAAAGACACAAAAAGAAGAGTCATGTAAATGCTCGGCATCGACATCAGCAACAA 1281
Query 1288 CATCAGAGTCTTACTGAAAAATACACACCTAAAACATTCCGGGATCTTCTGGGGCAGAAT 1347
||||||||||| || ||||||||||| |||||||||||||||||||| || || ||||||
Sbjct 1282 CATCAGAGTCTAACGGAAAAATACACGCCTAAAACATTCCGGGATCTCCTTGGTCAGAAT 1341
Query 1348 CTGGTGGTACAAGCTCTTTCTAATGCAGTTGCTAGACGAAAGCTTGGACTTTTGTATGTC 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 CTGGTGGTACAAGCTCTTTCTAATGCAGTTGCTAGACGAAAGCTTGGACTTTTGTATGTC 1401
Query 1408 TTCCACGGTCCAAATGGAACCGGAAAGACCTCTTGCGCTAGGATATTTGCAAGGGCTTTG 1467
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1402 TTCCACGGTCCAAATGGAACCGGAAAGACCTCTTGCGCTCGGATATTTGCAAGGGCTTTG 1461
Query 1468 AACTGTCATTCCATGGAACAACCAAAGCCTTGTGGCACTTGCAGTTCTTGTGTTTCACAT 1527
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1462 AACTGTCATTCCATGGAACAACCAAAGCCTTGTGGTACTTGCAGTTCTTGTGTTTCACAT 1521
Query 1528 GATATGGGTAAAAGCTGGAACATTCGGGAAGTGGGTCCTGTTGGGAACTATGACTTTGAG 1587
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1522 GATATGGGTAAAAGCTGGAACATTCGAGAAGTGGGTCCTGTCGGGAACTATGACTTTGAG 1581
Query 1588 AAAATAATGGATTTACTTGATGGTAATGTGATGGTTTCATCTCAGTCCCCTCGGGTGTTC 1647
|| || ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1582 AACATCATGGATTTACTCGATGGTAATGTGATGGTTTCGTCTCAGTCACCTCGGGTGTTC 1641
Query 1648 ATATTTGATGATTGTGATACTTTGTCATCTGATTGTTGGAATGCGTTGTCCAAAGTGGTG 1707
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 1642 ATATTTGATGATTGTGATACCTTGTCATCTGATTGTTGGAATGCGCTGTCCAAAGTAGTG 1701
Query 1708 GATCGAGCAGCGCCACGTCATGTAGTCTTTATCCTCGTCTGTTCGAGTCTTGATGTTTTG 1767
||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||||| ||
Sbjct 1702 GATCGAGCAGCCCCACGTCGGGTAGTCTTTATACTCGTGTGTTCAAGTCTTGATGTACTG 1761
Query 1768 CCTCATGTGATCATATCTAGGTGCCAGAAATTCTTTTTCCCGAAACTGAAGGACGCAGAT 1827
||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 1762 CCTCATGTGATCATATCGAGGTGTCAGAAATTCTTTTTCCCGAAACTCAAGGACGCGGAT 1821
Query 1828 ATAGTTTACTCATTGCAATGGATTGCATCAAAGGAAGAGATTGAGATAGATAAAGATGCA 1887
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1822 ATAGTTTACTCATTGCAATGTATTGCATCAAAGGAAAAGATTGAGATAGATAAAGATGCA 1881
Query 1888 TTGAAGCTTATTGCTTCAAGATCAGATGGTTCATTAAGAGATGCTGAGATGACTCTTGAA 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1882 TTGAAGCTTATTGCTTCAAGATCAGATGGTTCATTAAGAGATGCTGAGATGACTCTTGAA 1941
Query 1948 CAGCTGAGTTTGTTAGGACAGAGGATCTCTGTTCCTTTAGTTCAGGAACTGGT 2000
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1942 CAGCTGAGTTTGTTAGGACAGAGGATCTCTGTTCCTTTAGTTCAGGAACTGGT 1994
Score = 2290 bits (1240), Expect = 0.0
Identities = 1407/1486 (95%), Gaps = 18/1486 (1%)
Strand=Plus/Plus
Query 1999 GTTGGGCTTGTTTCTGATGAAAAATTAGTGGATCTTCTTGATTTAGCTTTATCTGCAGAT 2058
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2035 GTTGGGCTTGTTTCTGATGAGAAATTAGTGGATCTTCTTGATTTAGCTTTATCTGCAGAT 2094
Query 2059 ACTGTAAATACTGTGAAGAATCTGAGAACAATAATGGAAACAAGTGTAGAACCATTGGCT 2118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 ACTGTAAATACTGTGAAGAATCTGAGAACAATAATGGAAACAAGTGTAGAACCATTGGCT 2154
Query 2119 TTAATGTCTCAGCTTGCAACGGTCATAACTGATATTCTTGCTGGTAGTTATGATTTCACT 2178
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2155 TTAATGTCTCAGCTTGCAACGGTCATAACCGATATTCTTGCTGGTAGTTATGATTTCACT 2214
Query 2179 AAAGATCA-GCATAAAAGAAAGTTTTTTCGACGACAACCATTACCTAAAGAAGATATGGA 2237
|||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2215 AAAGAT-AGGCATAAAAGAAAGTTTTTTCGACGGCAACCATTACCTAAAGAAGATATGGA 2273
Query 2238 GAAACTGAGACAGGCACTTAAGACGTTATCAGAGGCAGAGAAACAGCTGAGAGTATCAAA 2297
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2274 GAAACTGAGACAGGCACTTAAGACATTATCCGAGGCAGAGAAACAGCTGAGAGTATCAAA 2333
Query 2298 CGATAAACTGACTTGGCTCACAGCCGCGTTGCTTCAATTGGCTCCTGATCAGAACTATCT 2357
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2334 CGACAAACTGACTTGGCTCACAGCCGCGTTGCTTCAATTGGCTCCTGATCAGAACTATCT 2393
Query 2358 GCTTCAACGTTCGTCCACTGCAGACACTGGAGGTAGAGAAAGCTCAGATCACCATCTGGA 2417
|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 2394 GCTTCAACGTTCGTCCACTGCAGACAATAGAGGTAGAGAAAGCTCAGATCACCACCTGGA 2453
Query 2418 TCCTTCTAGCGATGCAGCTGGTGGAAGAAGTTCTGGTTTGGACAGAAGAAGAGGTGATAG 2477
|||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 2454 TCCTTCTAGCGATGCAGCAGGTGGAAGAAGTTCTGGATTGGACAGAAGGAGAGGAGATAG 2513
Query 2478 TAGAAAAAACCGACCCGCTGTTGAAGAAATTTGGTTAGAGGTTATTGAGAAGCTTCGAGT 2537
||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2514 TAGGAAAAACCAACCCGCTGTTGAAGAAATTTGGTTAGAGGTTATCGAGAAGCTTCGAGT 2573
Query 2538 TAACGGTTTGAGAGAGTTTCTTTATAAAGAAGGAAGAATCGTCTCTCTTAATCTCGGATC 2597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2574 CAACGGTTTGAGAGAGTTTCTTTATAAAGAAGGAAGAATCGTCTCTCTTAATCTCGGATC 2633
Query 2598 AGCTCCTACTGTGCATCTAATGTTCAGTTCTCCGTTAACCAAATCCACGGCTGAGAAATT 2657
|||||||||||| |||||||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 2634 AGCTCCTACTGTACATCTAATGTTCTCTTCGCCGTTAACCAAATCTACGGCTGAGAAATT 2693
Query 2658 CCGAAGCCATATTATGCAAGCGTTTGAGGCAGTTCTTGAGTCACCTGTCACAATAGAGAT 2717
||| ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 2694 CCGTGGCCATATTATGCAAGCGTTTGAGGCGGTTCTTGAGTCTCCTGTCACTATAGAGAT 2753
Query 2718 CAGATGCGAGACaaaaaaaGACCCGAGAAACAACGTGcatcatcatcatcatcaCCCAAC 2777
||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 2754 CAGATGCGAGACAAAGAAAGACCCAAGAAACAACGTGCATCATCATCATCAGCACCCACC 2813
Query 2778 TGTGAAAGACAAAAGCCTGCCACAATCTTTAGCACTCATTGGCCATGATTACAACATCGA 2837
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2814 TGTGAAAGACAAGAGCCTGCCACAATCTTTAGCACTCATTGGCCACGATTACAACATCGA 2873
Query 2838 TGGAAGTGGAAGAAGTGAGATAGTTGAAGTTACTGAATCTAATGGACAAAGACG---ACA 2894
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2874 TGGAAGTGGAAGAAGTGAGATAGTTGAAGTTACTGAATCTAACGGACAAAGACGACAACA 2933
Query 2895 AC---AACAGAAGCAACAGGAAGAGGAGAGGACAGAGCCAGTTGGTTCCTCTGCGTTAGC 2951
|| |||||||||| |||| ||||||||||||||||| ||||||||| ||||| |||||
Sbjct 2934 ACAAGAACAGAAGCAGCAGGTAGAGGAGAGGACAGAGCGAGTTGGTTCTTCTGCTTTAGC 2993
Query 2952 CCGAGCTAGAAGGAAACATTTGGAAGCAAGCCAGAGTCAGAACCAGAGCCAAAGCATTGT 3011
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2994 CCGTGCTAGAAGGAAACATTTGGAAGCAAGCCAGAGTCAGAATCAGAGCCAAAGCATTGT 3053
Query 3012 GAGAGGTAAGGTCTCGTTGGCTCATGTGATTCAGCAAGCTGACGGATGCTCACTCCAGAA 3071
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3054 GAGAGGTAAGGTCTCGTTGGCTCATGTGATTCAGCAAGCTGACGGATGCACACTCCAGAA 3113
Query 3072 CGGTTGGTCTAAACGCAAGGCCGTGTCTATCGCCGAGAAGCTGGAACAAGAAAATCTGAG 3131
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3114 CGGTTGGTCTAAACGCAAGGCTGTGTCTATCGCCGAGAAGCTGGAACAAGAAAATCTGAG 3173
Query 3132 ACTTGAACCAAGATCAAGAAGCTTGTTATGCTGGAAATCCTCAAGAGGCACACGTCGCAA 3191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3174 ACTTGAACCAAGATCAAGAAGCTTGTTATGCTGGAAATCCTCAAGAGGCACACGTCGCAA 3233
Query 3192 GGCCACGAGGTTGAAGGTGAGAACAAGAAGGGCAAGACCACATACGTTACTT-AAGCTCG 3250
||||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||||
Sbjct 3234 GGCCACGAGGTTGAAGGTGAGAACAAGAAGGGCGAGACCACATTCGTTA-TTGAAGCTCG 3292
Query 3251 TGTCGTGCGGCAAATGCCTGTCTACGAGATCTCCAACAAGATAAAGGCTTTAATTCTCTG 3310
|||||||||| ||||| ||||| |||||||||||||||||||||||||||| |||| ||
Sbjct 3293 TGTCGTGCGGGAAATGTCTGTCAACGAGATCTCCAACAAGATAAAGGCTTTTGTTCTTTG 3352
Query 3311 ATCGATCATACGCAGATTTTACTGTAGTTTCAATCAATGTAG-Cttttttctttgca-tt 3368
||| |||||||||||||||||||||| ||| ||||||||||| |||| ||||||| ||
Sbjct 3353 ATCAATCATACGCAGATTTTACTGTAATTTTAATCAATGTAGGCTTT---CTTTGCAATT 3409
Query 3369 tttt-AATCTTTCTTACCACAAAATAAATGGATTAATT-TAACTCTTCAAAACCATTCGT 3426
|||| |||| |||||||||| || ||||||||||| || |||| ||||||| |||||||
Sbjct 3410 TTTTCAATCATTCTTACCACCAA-TAAATGGATTAGTTCTAACACTTCAAAGTCATTCGT 3468
Query 3427 AAGAGAGATCTTTATTAATGTAGATGCATCAAGAACTGCGTTATGT 3472
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3469 AAGAAAGATCTTTATTAATGTAGATGCATCAAGAACTGCGTTATGT 3514
Score = 667 bits (361), Expect = 0.0
Identities = 390/404 (97%), Gaps = 2/404 (0%)
Strand=Plus/Plus
Query 1 ATGACGACGACGACTACTACTACGACAAGGGTTGCTTCTTCTTCTTCAACACGGAACAAT 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGACGACGACGACGACTACTACGACAAGGGTTGCTTCTTCTTCTTCAACACGGAATAAT 60
Query 61 CGAATTCTGAAAGATGCAAATGGAGATATCGGTGAGCATCTTCGTAACCATATCCATTTA 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CGAATTCTGAAAGATGCAAATGGAGATATCGGTGAGCATCTTCGTAACCACATCCATTTA 120
Query 121 ACGAATTGTATTCATTTGAAGAACAATATGCATAAGCAGAGTCCTGTTTTAACTGACCGT 180
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 ACCAATTGTATTCATTTGAAGAACCATATGCATAAGCAGAGTCCTGTTTTAACTGACCGT 180
Query 181 GCCTTAATGAGAGACCTCATTGTTCTCCAAAGGTCACGGTCTCTTAGAGATCCATCTGCG 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 181 GCCTTAATGAGAGACCTCATTGTTCTCCAAAGGTCACGGTCACTTAGAGATCCTTCCGCG 240
Query 241 AGCCCTCCTGCTTGGAACACGCCTCCTTCTGTTGTGGATTTGCTTCCGAAGAAAGGAGAT 300
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 241 AGCCCTCCTGCTTGGAACACGCCTCCTTCTGTTGTGGATTTGCTTCCTAAGAAAGGTGAT 300
Query 301 CTTGTGGAAGGAGGAAGAAGATCTGTTGATT-TAAAGAAGTCTAGTCGTAGGTTGTCTGC 359
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 301 CTTGTGGAAGGAGGAAGAAGATCTGTTGATCATAA-GAAGTCTAGTCGTAGGTTGTCTGC 359
Query 360 TTTGAGTGGTTCTTCACCTGTTGTCAACTTTGGGACATCTAAAG 403
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 TTTGAGTGGTTCTTCACCTGTTGTGAACTTTGGGACATCTAAAG 403
> Ahg330841 jgi|Araly1|330841|fgenesh1_pm.C_scaffold_8000184
Length=2913
Score = 150 bits (81), Expect = 6e-35
Identities = 236/305 (77%), Gaps = 34/305 (11%)
Strand=Plus/Plus
Query 739 AAAAGACGGAAGTTTAGAGGGACGAGGAGAGTT---CGGG-G-TAAGAGT-AGAGATACT 792
||||||||||||||||||||||||||||||| |||| | | | || ||||||| |
Sbjct 541 AAAAGACGGAAGTTTAGAGGGACGAGGAGAGCGGGACGGGCGGTTATTGTTAGAGATAAT 600
Query 793 GGTGGTGGTAAGAGTGAGATGTCTGTTGCTTCTAACACATTGCCTCAAGTTGAGAAGCAT 852
| |||| | |||||||||||||| ||||||| ||| | |||||| | ||||||| ||
Sbjct 601 GTTGGTAATGAGAGTGAGATGTCTATTGCTTCAAACTCGGTGCCTCGTGGTGAGAAGTAT 660
Query 853 GATGGAGAA-AA--AG-AGG--GATTTGGGGAACAGAACATGA------C-------A-A 892
|| |||||| || || ||| || | | ||||||||||||| | | |
Sbjct 661 GAGGGAGAAGAAGGAGGAGGAAGAGATAGAGAACAGAACATGAGTGGAGCTGTTCCGAGA 720
Query 893 A--GGCTTGTGGGATTCCATTTAATTGGTCAAGAATTCATCACCGAGGGAAAACTTTTCT 950
| || |||||| || || ||||||||||||||||||||||| |||| |||||||||||
Sbjct 721 AACGG-TTGTGGAATACCGTTTAATTGGTCAAGAATTCATCATAGAGGTAAAACTTTTCT 779
Query 951 TGATA-AGGCGGGTAGGAGTTTGTCTTGTGGTATGTCTGATTCGAAAGGTGGTAGGAAAG 1009
||||| || | ||||||||||| |||||||| ||||||||||| ||||| | |||||||
Sbjct 780 TGATATAG-CTGGTAGGAGTTTATCTTGTGGAATGTCTGATTC-AAAGG-GA-AGGAAAG 835
Query 1010 GTGAA 1014
| |||
Sbjct 836 GCGAA 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131108338985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5