BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G18823.1

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329654 jgi|Araly1|329654|fgenesh1_pm.C_scaffold_7001881           272    7e-73


> Ahg329654 jgi|Araly1|329654|fgenesh1_pm.C_scaffold_7001881
Length=225

 Score =  272 bits (147),  Expect = 7e-73
 Identities = 208/234 (89%), Gaps = 18/234 (8%)
 Strand=Plus/Plus

Query  1    ATGGTCCATCCAAGATTTGTTTTCTTCGCTTTCCTCGCTCTCTCCGTTTTACTTGCAGTG  60
            ||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||    
Sbjct  1    ATGGTCCATTCAAGATTTGTTTTCTTTGCTTTCCTCGCTCTCTCGGTTTTACTTGC----  56

Query  61   ATGAATGAAGATTCAATTTTGTCTTCCAACAAAGGAGATTCATTGTGTTGCAACGATCAC  120
              |   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  57   --G---GAAGATTCAATTTGGTCTTCCAACAAAGGAGATTCATTGTGTTGCAACGATCAC  111

Query  121  CCCGAATTTGGAATATGTACTAATAA-A--AGTTGTAACAAGTGGTGTCTTCAAGGCTGT  177
            ||||||||||||| |||||||||||| |  | ||||||||||||||||||||||||||||
Sbjct  112  CCCGAATTTGGAACATGTACTAATAATATCAATTGTAACAAGTGGTGTCTTCAAGGCTGT  171

Query  178  A-C-G-A-GAG-G-TGGCTTCTGTAAAAGAAAAATTTGTCATTGCTACTGTTAA  225
            | | | | ||| | ||||||||| ||||||| ||||||||||||||||||||||
Sbjct  172  AGCAGTAAGAGAGGTGGCTTCTGCAAAAGAAGAATTTGTCATTGCTACTGTTAA  225



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7714028722


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5