BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18830.1
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492976 jgi|Araly1|492976|fgenesh2_kg.7__2409__AT4G18830.1 2176 0.0
> Ahg492976 jgi|Araly1|492976|fgenesh2_kg.7__2409__AT4G18830.1
Length=1396
Score = 2176 bits (1178), Expect = 0.0
Identities = 1331/1402 (95%), Gaps = 22/1402 (2%)
Strand=Plus/Plus
Query 1 GTTATTTAGGCAAAAAGTGGTCACAGGATTCTTCAGGCGGGTTTGGTTCtttttttCAAA 60
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GTTATTTAGGCTAAAAGTGGTCACAGGATTCTTCAGGCGGGTTTGGTTC-TTTTTTCAAA 59
Query 61 CTACAACTAGCTTTTACCCGTTAAGACAACATCTTCATCTCCCTCCTATTAAACACAACG 120
|| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 60 CTGCAACTAGCTTTTACCCGTTAAG---ACATCTTCATCTCCCTCATATTAAACACAACG 116
Query 121 ACCTAACCATATTACAGCAGTAAGCTCTAGATACATATCCCTTCATTTTTTATACATC-- 178
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 117 ACCTAACTATATTACAGCAGTAAGCTCTAGATACATATCCCTTCA-TTTTTATACATCTT 175
Query 179 -TTTTCATAGTCTAGCCT--AAGAA-ACCCGGTAAACTAAGAAAGCACAAAACTTCTTCA 234
||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||
Sbjct 176 TTTTTCATAGTCTAGCCTAAAAAAACACCCGGTAAACTAAGAAAGCACAAAACTTTTTCA 235
Query 235 GATTCTTGGAATGATGAGATGGGGAAGAAAGAAACCTG-----T-ttcttcttcttcttc 288
|||| ||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 236 GATT-TTGGAATGATGAGATGGGGAAGAAAGAAACCTGTTTCTTCTTCTTCTTCTTCTTC 294
Query 289 ttcCGGGTTGTCTCGTGCTCTTCCTGTTTCTTGGTTTTCAAAGTTAAGTGGTTCTTCTGA 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TTCCGGGTTGTCTCGTGCTCTTCCTGTTTCTTGGTTTTCAAAGTTAAGTGGTTCTTCTGA 354
Query 349 CTTGAAACCTGCAAAAGAGAAGAAGCAAGATGAAAAAGCTAGCCAGAACATATCTGTAAA 408
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 355 CTTGAAACCTGTAAAAGAGAAGAAGCAAGATGAAAAAGCTAGCCAGAACATGTCTGCAAA 414
Query 409 AACTTCCTTGAGTTCTACTACACGTCGAAGTGATATTCATGAGAACAGCAAAAGGTTTCA 468
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 415 AACTTCCTTGAGTTCTACTAAACATCGAAGTGATATTCATGAGAACAGCAAAAGGTTTCA 474
Query 469 AAGAGTATCAGTAGAAAAGGAGAACTCTGCAACAAGATCAGCAGATAAAGAGTCGAATGA 528
||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||
Sbjct 475 AAGAGTATCAGTAGAAAAGGAGAACGCTACAACAAGATCAGCAGATAAAGAGTCAAATGA 534
Query 529 GAAGTTTGAAGAGATAATGAGCAGTGTGAGGAAGAAAGTAAGAGATTTCCAAAAAGAGAC 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GAAGTTTGAAGAGATAATGAGCAGTGTGAGGAAGAAAGTAAGAGATTTCCAAAAAGAGAC 594
Query 589 ATGTGGTTTTCTGGAAGTGGAGGCAATGGATAGAGACAACGGAACTGTGATCCTGACGCC 648
|||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 595 ATGTGGTTTTCTGGAAGTGGAGGCAATGGATAGAGAGAAAGGAACTGTGATCATGACGCC 654
Query 649 AAGAATTCAGGTGAACAGAGATAAACAGAGATGTGAGAGACGTGACCAAAGGCTTCTTGA 708
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 655 AAGAATTCAGGTGAACAGAGATAAGCAGAGATGTGAGAGACGTGACCAAAGGCTTCTCGA 714
Query 709 ACAAAAGCCAAAGAGATCAGAACAAGACGCGGGGGTCAAGGTGAAAAAACCAGCTAGAAG 768
||||||||||||||||||||||||| | || | |||||||||||||||||||| |||||
Sbjct 715 ACAAAAGCCAAAGAGATCAGAACAAAATGCAGATGTCAAGGTGAAAAAACCAGCGAGAAG 774
Query 769 GACAGGTACAGGAGGTTACAGTAGAGAAGATTCCGTGATTCTTGGTCATACCATAACAAA 828
||||||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||
Sbjct 775 GACAGGTACAGGAAGTTACAGTAGAGAGGATTCCGTGAATCTTGGTCATACTGTAACAAA 834
Query 829 ACCGGCTCATCAGTGGGAAAAGCTCAAGGAAGTCAAACTAAGAGAAGTGAAGCTGAAGGC 888
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ACCTGCTCATCAGTGTCAAAAGCTCAAGGAAGTCAAACTAAGAGAAGTGAAGCTGAAGGC 894
Query 889 TGACCAACAGAGGAAATCTCTGTACCTAAAAAGGGAGCTAAACAGAATAGGAACAAAAGA 948
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 895 TGACCAACAGAGGAAATCTCTGTACCTAAAAAGGGAGCTAAACAGATTAGGAACAAAAGA 954
Query 949 AAACAACAAAGTTAGAGTTTTTTCACCAAGAGCATCTGAAAAATGCAGAGTTAAAGCTAT 1008
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 955 AAACAACAAGGTTAGAGTTTTTTCACCAAGAGCATCTGAAAAATGTAGAGTTAAAGCTAT 1014
Query 1009 TGAAGACTTGAAAAAGGCCAAACAGAGAGCACGGGAGCACGAGCTTCTGATAGAAACAGC 1068
|||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1015 TGAAGACTTGAAGAAGGCTAAACTGAGAGCACGGGAGCACGAGCTTCTGATAGAAACAGC 1074
Query 1069 AGATGGAGGAATGGAGAACGAAAGCTTTGCAGTAGTGAAATGCTCAAGTGATCCTCAGAA 1128
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1075 AGATGGAGGAATGGAGAACGAAAGCTTTGCAGTAGTTAAATGCTCGAGCGATCCTCAGAA 1134
Query 1129 GGATTTTAGAGATTCAATGATTGAGATGATTATGGAGAATGGTATCAACCATCCAGAAGA 1188
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1135 GGATTTTAGAGATTCAATGATTGAGATGATCATGGAGAATGGTATCAACCACCCTGAAGA 1194
Query 1189 ACTCAAAGAGCTTCTGGTTTGTTATCTCAGACTCAATACAGATGAATATCATGACATGAT 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ACTCAAAGAGCTTCTGGTTTGTTATCTCAGACTCAATACAGATGAATATCATGACATGAT 1254
Query 1249 CATCAGTGTGTTCCAGCAGGTGCATAATGATTTTAATTTTCATTAATTTTGGTGTAGAAT 1308
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1255 CATCAGTGTGTTCCAGCAGGTGCATAATGATTTTAATTTTCAGTAATTTTGGTGTAGAAT 1314
Query 1309 AGTAACATATAGATTCATCAGTATGATTTGTGGATAGTTTAAGCTTTCTACGATGTAACT 1368
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1315 AGTAATATATAGATTCATCACTATGATTTGTGGATAGTTTAAGCTTTCTACGATGTAACT 1374
Query 1369 ---T-CATGCTTCTTGGTAATA 1386
| ||||||||||||| |||
Sbjct 1375 AACTTCATGCTTCTTGGTTATA 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5