BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G18860.1

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg890303 jgi|Araly1|890303|Al_scaffold_0007_2289                    196    6e-50


> Ahg890303 jgi|Araly1|890303|Al_scaffold_0007_2289
Length=516

 Score =  196 bits (106),  Expect = 6e-50
 Identities = 150/171 (88%), Gaps = 3/171 (2%)
 Strand=Plus/Plus

Query  106  AAACACAATCTTGCTCTTCAATTCCGTAGTTTTAT-CACCAATT-A-TCCGCCCAAAGCC  162
            ||||||||| |||||||||| ||||| |||||||| ||||  || | |  || |||||||
Sbjct  271  AAACACAATGTTGCTCTTCACTTCCGCAGTTTTATCCACCGTTTAATTTGGCTCAAAGCC  330

Query  163  CTAGTCTTTGACTCATCTTCCGCAGTATCCGATCTAGGTTTTACGGAATCAGAAACAGGG  222
            |||| ||||||||| |||||||||||||||||| | |||||| |||||||||||||||| 
Sbjct  331  CTAGACTTTGACTCGTCTTCCGCAGTATCCGATATGGGTTTTGCGGAATCAGAAACAGGA  390

Query  223  GCTTCAACCAGGGTTTTGGGAAAATCAGCGTCTTGGATCTTCATTTTCTTC  273
             | ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  391  TCATCAACTAGGGTTTTGGGAAAATCAGCGTCTTGGATTTTCATTTTCTTC  441



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10302009030


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5