BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18860.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value Ahg890303 jgi|Araly1|890303|Al_scaffold_0007_2289 196 6e-50 > Ahg890303 jgi|Araly1|890303|Al_scaffold_0007_2289 Length=516 Score = 196 bits (106), Expect = 6e-50 Identities = 150/171 (88%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 106 AAACACAATCTTGCTCTTCAATTCCGTAGTTTTAT-CACCAATT-A-TCCGCCCAAAGCC 162 ||||||||| |||||||||| ||||| |||||||| |||| || | | || ||||||| Sbjct 271 AAACACAATGTTGCTCTTCACTTCCGCAGTTTTATCCACCGTTTAATTTGGCTCAAAGCC 330 Query 163 CTAGTCTTTGACTCATCTTCCGCAGTATCCGATCTAGGTTTTACGGAATCAGAAACAGGG 222 |||| ||||||||| |||||||||||||||||| | |||||| |||||||||||||||| Sbjct 331 CTAGACTTTGACTCGTCTTCCGCAGTATCCGATATGGGTTTTGCGGAATCAGAAACAGGA 390 Query 223 GCTTCAACCAGGGTTTTGGGAAAATCAGCGTCTTGGATCTTCATTTTCTTC 273 | ||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 391 TCATCAACTAGGGTTTTGGGAAAATCAGCGTCTTGGATTTTCATTTTCTTC 441 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10302009030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5