BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18870.1
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890302 jgi|Araly1|890302|Al_scaffold_0007_2288 1029 0.0
Ahg890715 jgi|Araly1|890715|Al_scaffold_0007_2701 348 5e-95
Ahg940770 jgi|Araly1|940770|scaffold_601314.1 91.6 9e-18
> Ahg890302 jgi|Araly1|890302|Al_scaffold_0007_2288
Length=888
Score = 1029 bits (557), Expect = 0.0
Identities = 731/812 (90%), Gaps = 24/812 (3%)
Strand=Plus/Plus
Query 9 AAAATGAAGGTTCATTAACCTCAGTATCATATTTCATCACCACAACGTATGATATGGTCG 68
||||||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 17 AAAATGAAGGTTCATCAACCTCAATATCAAATTTCATCACCACAACATATGATATGGTCG 76
Query 69 ATGATCTTTCATTAGATTCAATAATTTCTTGGAGCCAGAGCGGCAAGAGTTTCATCATTT 128
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 77 ATGATCTTTCATCAGATTCAATAATTTCTTGGAGCCAGAGCGGCAAGAGTTTCATTATTT 136
Query 129 GGAATCCAGAAGAATTTTACAACAATCTT-CTTCAAAGATTCTGCTTCCAA--CG-C--- 181
|||||||||||||||||||||||||| || |||||||||||||| |||||| || |
Sbjct 137 GGAATCCAGAAGAATTTTACAACAAT-TTCCTTCAAAGATTCTGTTTCCAAGGCGACAAT 195
Query 182 ATAAATACCTTTTTCTCTTTCCTTTTTTCACATGGTTTCAGAAAAATCGACTCTGGAAAA 241
|||||| |||||||||||| |||| |||||||||||| ||||||||||||||||||||
Sbjct 196 ATAAATTCCTTTTTCTCTTACCTTAATTCACATGGTTTTAGAAAAATCGACTCTGGAAAC 255
Query 242 TGGGAATTCGCGAATGATAATTTTGTGCGAGGTCAACGTCACCTCATAAATAACATTATA 301
||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| | ||||
Sbjct 256 TGGGAATTCGCAAATGATAATTTCGTGCGAGGTCAACCTCACCTCATAAATAATACTATA 315
Query 302 AG-TGATGTAATAGAGCAGGA-GGTTCAATATGATCAAGGAATGGAAT-TGTTTAAAGCA 358
|| || |||||||||| ||| ||||| |||||| || | |||| || ||||| |||
Sbjct 316 AGTTG-TGTAATAGAG-GGGAGGGTTCTATATGAGGAAAGTATGG-ATATGTTT-AAGGT 371
Query 359 GA-AAAATTATTTGCA-CGACTAGTGAAAA-AAGTACAGGATCAATTGCCACCTCATAAC 415
|| ||||||||||| | || | ||| |||| ||||| |||||||||||||||||||||||
Sbjct 372 GAGAAAATTATTTG-AGCGGCAAGT-AAAAGAAGTAGAGGATCAATTGCCACCTCATAAC 429
Query 416 AGTTATCCAACCTCAAAACTTCCTTTCCCCACCAAAATCTATGAGATGGTGGACGATCCT 475
||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct 430 AGTTATCCAACCTCAAAACGTCCTTTTCCCACCAAACTCTATGAGATGGTGGACGATCCT 489
Query 476 TCATCGGATGCTATTATCTCATGGAGCCAAAGTGGCAAGAGTTTCATCATTTGGAATCCA 535
|| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 490 TCGTCGGATGCTATTATTTCATGGAGCCAGAGTGGCAGGAGTTTCATCATTTGGAATCCA 549
Query 536 CAAGAATTTTGCAAAGATCATCTTCGTAGACTCTTCAATACCCTCCATATACATTTTTTC 595
|||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||| |||
Sbjct 550 AAAGAATTTTGCAAAGATCTTCTTCGTAGATTCTCCAATACCCTCCATATACCTTTATTC 609
Query 596 TTCTATAAACTTAAAATATTTGGTTTCaaaaaaaTTAATCCAAAGAAATGGGAATTTGCA 655
||| |||||||| ||| |||| |||||||||||||| ||||||||||||||||||| |||
Sbjct 610 TTCCATAAACTTCAAAGATTTAGTTTCAAAAAAATTGATCCAAAGAAATGGGAATTCGCA 669
Query 656 AATGATAATTTTGTCCGGGGTCAACGTCACCTTGTGGAAATCATTATAAGCAATGATAAA 715
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 670 AATGATAATTTTGTTCGGGGTCAATGTCACCTTGTGGAAATCATTATAAGCAATGA-AAA 728
Query 716 A-AGAAGAATGATCAACTACGTAAACAGG-ATGCCAGAGAGaaaaaaaTGGCGGAGGCAG 773
| |||||| |||||||||||||||| || ||| |||| |||||||| ||| |||||||
Sbjct 729 AGAGAAGATTGATCAACTACGTAAA-AGATATGACAGACAGAAAAAACTGGGGGAGGCAA 787
Query 774 GAGAATTGTTTAAGTTGCAAATTGAGGAAATG 805
||||||||||||||||||||||||||||||||
Sbjct 788 GAGAATTGTTTAAGTTGCAAATTGAGGAAATG 819
Score = 65.8 bits (35), Expect = 5e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 830 AAGGCCAAGGAAGTAAAGGAACAAGAGGTTCGACT 864
|||||||||||||||||||||||||||||||||||
Sbjct 823 AAGGCCAAGGAAGTAAAGGAACAAGAGGTTCGACT 857
> Ahg890715 jgi|Araly1|890715|Al_scaffold_0007_2701
Length=537
Score = 348 bits (188), Expect = 5e-95
Identities = 426/535 (80%), Gaps = 40/535 (7%)
Strand=Plus/Plus
Query 20 TCATTAACCTCAGTATCATATTTCATCACCACAACGTATGATATGGTCGATGATCTTTCA 79
|||| ||||||| |||| ||||||||||||||| |||| |||||||||||||||||||
Sbjct 19 TCATCAACCTCACTATC---TTTCATCACCACAACATATGTTATGGTCGATGATCTTTCA 75
Query 80 TTAGATTCAATAATTTCTTGGAGCCAGAGCGGCAAGAGTTTCATCATTTGGAATCCAG-A 138
| | |||||||||| || ||||| ||||||||||||||||||||||||||||||| || |
Sbjct 76 TCATATTCAATAATCTCGTGGAGTCAGAGCGGCAAGAGTTTCATCATTTGGAATC-AGGA 134
Query 139 AGAATTTTACAACAATCTTCTTCAAAGATTCTGCTT--CCAAC-GCATAAATACCTTTTT 195
||| |||| || |||||| || |||||||||| | ||||| | || || || ||
Sbjct 135 AGAGTTTTCCAGCAATCTCCTACAAAGATTCTTCAAGACCAACAGTTTAGAT---TTATT 191
Query 196 CT-CTTT--CCTTTTT-TCACATGG-TTTCAGAAAAATCGACTCTGGAAAATGGGAATTC 250
|| |||| |||| | |||| | ||| ||||||||||||||| |||||||||| |||
Sbjct 192 CTTCTTTAACCTTGAAAT-ACATTGCTTT-AGAAAAATCGACTCTAGAAAATGGGACTTC 249
Query 251 GCGAATGATAATTTTGTGCGAGGTCAACGTCACCTCATAAATAACATTATAAG-TG-ATG 308
|| ||||||||||||||||||| ||||| |||||||||||| ||||||||||| | |||
Sbjct 250 GCAAATGATAATTTTGTGCGAGATCAACCTCACCTCATAAACAACATTATAAGCTTCATG 309
Query 309 TAATAGA-GCAGGAGGTTCAA-TATGATC-AAGGAATGGA-ATTGTTTAAAG-CAGAAAA 363
| |||| | | | || ||| || || | || |||||| || | | |||| | |||
Sbjct 310 -A-TAGAAGAAAG-GGATCAGCTA-GACCGAAA-AATGGATAT-GAT-AAAGGCGGAACG 362
Query 364 ATTATTTGC-ACGACTAGTGAAAAAAGTACAGGATCAATTGCCACCTCATAACAGTTATC 422
|||||| | | | | ||| ||| ||||| ||||||| |||| |||| ||| ||||||
Sbjct 363 TTTATTTACCATG-CAAGTTAAAGAAGTAGAGGATCAGTTGCAACCTAATAGGTGTTATC 421
Query 423 CAACCTCAA-AAC-TTCCTTTCCCCACCAAAATC-TATGAGATGGTGGACGATCCTTCAT 479
||| | || ||| ||| ||||| |||||| | |||||||||||||| ||||| || |
Sbjct 422 CAAACG-AACAACATTC-TTTCCTAACCAAAG-CATATGAGATGGTGGATGATCCCTCGT 478
Query 480 CGGATGCTATTATCTCATGGAGCCAAAGTGGCAAGAGTTTCATCATTTGGAATCC 534
||||| ||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 479 CGGATAAAATTGTATCATGGAGCCAAAGCGGCAAGAGTTTCATCATTTGGAATCC 533
Score = 73.1 bits (39), Expect = 3e-12
Identities = 78/97 (80%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 40 TTTCATCACCACAA-CGTATGATATGGTCGATGATCTTTCATTAGATTCAATAATTTCTT 98
|||| | |||| || | ||||| ||||| ||||||| || | ||| ||| | || |
Sbjct 438 TTTCCTAACCA-AAGCATATGAGATGGTGGATGATCCCTCGTCGGATAAAATTGTATCAT 496
Query 99 GGAGCCAGAGCGGCAAGAGTTTCATCATTTGGAATCC 135
||||||| |||||||||||||||||||||||||||||
Sbjct 497 GGAGCCAAAGCGGCAAGAGTTTCATCATTTGGAATCC 533
> Ahg940770 jgi|Araly1|940770|scaffold_601314.1
Length=420
Score = 91.6 bits (49), Expect = 9e-18
Identities = 87/106 (82%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 56 TATGATATGGTCGATGATCTTTCATTAGATTCAATAATTTCTTGGAGCCAGAGCGGCAAG 115
||||| ||||| || |||| |||| |||||||| || || |||||| |||||||||||
Sbjct 17 TATGAGATGGTGGACGATCCTTCAACGGATTCAATGATCTCGTGGAGCGAGAGCGGCAAG 76
Query 116 AGTTTCATCATTTGGAATCCAGAAGAATTTTACAACAATCTTCTTC 161
||||||||||||||||||| | || |||| ||| ||| ||||||
Sbjct 77 AGTTTCATCATTTGGAATCAACCTGAGTTTTGCAATAATGTTCTTC 122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32518848201
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5