BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18880.1
Length=1904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492972 jgi|Araly1|492972|fgenesh2_kg.7__2405__AT4G18880.1 1958 0.0
> Ahg492972 jgi|Araly1|492972|fgenesh2_kg.7__2405__AT4G18880.1
Length=1772
Score = 1958 bits (1060), Expect = 0.0
Identities = 1209/1281 (94%), Gaps = 10/1281 (1%)
Strand=Plus/Plus
Query 503 TTTTCAGAGATGGATGAGAATAATCATGGAGTTTCATCAAGCTCACTTCCACCTTTCCTC 562
|||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 420 TTTTTAGAGATGGATGAGAGTAATCATGGAGGTTCATCAAGCTCACTCCCACCTTTCCTC 479
Query 563 ACCAAAACATATGAGATGGTTGATGATTCTTCATCCGATTCTATCGTCTCTTGGAGTCAG 622
||||||||||||||||||||||||||||||||||||||||| || || || |||||||||
Sbjct 480 ACCAAAACATATGAGATGGTTGATGATTCTTCATCCGATTCAATTGTTTCGTGGAGTCAG 539
Query 623 AGCAATAAGAGTTTCATCGTTTGGAATCCGCCGGAGTTTTCTAGAGATCTTCTTCCGAGA 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGCAATAAGAGTTTCATCGTTTGGAATCCGCCGGAGTTTTCTAGAGATCTTCTTCCGAGA 599
Query 683 TTCTTCAAGCACAATAACTTCTCTAGCTTTATCCGCCAGCTTAACACATATGGTTTTAGA 742
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 600 TTCTTCAAGCACAATAACTTCTCAAGCTTTATCCGTCAGCTTAACACATACGGTTTTAGA 659
Query 743 AAAGCTGATCCTGAGCAATGGGAATTTGCGAATGATGATTTTGTGAGAGGTCAACCTCAT 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAAGCTGATCCTGAGCAATGGGAATTTGCGAATGATGATTTTGTGAGAGGTCAACCTCAT 719
Query 803 CTTATGAAGAACATTCATAGACGCAAACCAGTTCATAGCCACTCTTTACCGAATCTTCAA 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTTATGAAGAACATTCATAGACGCAAACCAGTTCATAGCCACTCTTTACCGAATCTTCAA 779
Query 863 GCTCAGTTAAACCCGTTGACGGATTCAGAACGAGTGAGAATGAATAATCAGATTGAGAGA 922
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 GCTCAGCAAAACCCGTTGACGGATTCAGAACGACTGAGAATGAATAATCAGATTGAGAGA 839
Query 923 TTGACAAAAGAGAAAGAAGGATTGCTTGAAGAGTTACATAAACAAGACGAGGAACGAGAA 982
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 840 TTGACAAAAGAGAAAGAAGGGTTGCTTGAAGAGTTACAGAAACAAGACGAAGAACGAGAA 899
Query 983 GTGTTTGAGATGCAAGTGAAAGAACTTAAAGAACGATTACAACACATGGAGAAGCGTCAG 1042
|||||||||| |||||| |||||||| |||||||| |||||||| |||||||| ||||||
Sbjct 900 GTGTTTGAGAGGCAAGTTAAAGAACTAAAAGAACGGTTACAACAAATGGAGAAACGTCAG 959
Query 1043 AAAACAATGGTTTCGTTTGTTTCTCAAGTATTGGAAAAGCCAGGGCTTGCTTTGAACCTA 1102
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 AAAACAATGGTTTCGTTTGTTTCTCAAGTATTGGAAAAACCAGGGCTTGCTTTGAACCTC 1019
Query 1103 TCGCCGTGTGTTCCCGAAACAAACGAGAGGAAAAGAAGGTTCCCTAGGATCGAGTTCTTT 1162
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1020 TCGCCGTGTGTTCCCGAAACAAACGAGAGGAAAAGAAGGTTCCCTAGGATCGGGTTCTTT 1079
Query 1163 CCCGATGAACCGATGTTGGAAGAGAACAAAACTTGTGTTGTTGTGAGAGAGGAAGGTTCT 1222
||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 1080 CCCGATGAACCGATGTTGGAAGATAACCAAACGTGTGTTGTTGTGAGAGAGGAAGGTTCT 1139
Query 1223 ACAAGCCCTTCTTCACACACAAGAGAGCATCAAGTGGAACAGTTAGAGTCATCGATAGCG 1282
|||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |
Sbjct 1140 ACAAGCCCGTCTTCACACACAACAGAGCATCAAGTGGAACAGTTAGAGTCATCCATAG-G 1198
Query 1283 -ATTTGGGAGAATCTTGTATCGGATTCTTGTGAGAGTATGTTACAATCAAGAAGTATGAT 1341
|||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1199 TATTTGGGAGAATCTTGTATCCGACTCTTGTGAGAGTATGTTACAATCAAGAAGCATGAT 1258
Query 1342 GACACTTGATGTGGATGAATCATCTACTTTTCCAGAGAGCCCTCCTCTTTCTTGCATACA 1401
||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct 1259 GACACTTGATGTGGATGAATCATCTACTTGTCCACAAAGCCCTCCTCTTTCTTGCATACA 1318
Query 1402 GTTAAGTGTCGATTCACGTCTCAAATCTCCTCCTTCTCCAAGGATCATCGATATGAACTG 1461
| ||||| ||||| |||||| ||| |||||||||||||| ||||||||||| |||||||
Sbjct 1319 GCTAAGTATCGATACACGTCCCAAGTCTCCTCCTTCTCCGAGGATCATCGACATGAACTC 1378
Query 1462 TGAGCCCGATGGTTCGAAAGAACAGAACACTGTTGCTGCTCCTCCTCCTCCTCCAGTAGC 1521
|||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1379 TGAGCCCGATTTTTCGAAAGAACAGAACACTGTTGCTGCTGCTCCTCCTCC---AGTAGC 1435
Query 1522 AGGAGCGAATGATGGCTTCTGGCAGCAGTTTTTCTCAGAGAATCCTGGCTCAACCGAGCA 1581
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 AGGAGCGAATGATGTCTTCTGGCAGCAGTTTTTCTCAGAGAATCCTGGCTCAACCGAGCA 1495
Query 1582 ACGGGAAGTTCAATTAGAGAGGAAAGACGATAAAGATAAAGCCGGAGTACGTACTGAGAA 1641
|||||||||||||| |||||||||||| ||||||||| ||||| | |||||| ||||||
Sbjct 1496 ACGGGAAGTTCAATCAGAGAGGAAAGATGATAAAGATGAAGCC--A-TACGTAGTGAGAA 1552
Query 1642 ATGTTGGTGGAATTCGAGAAATGTTAATGCAATTACAGAACAGCTTGGACATCTGACTTC 1701
|||||||||| ||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1553 ATGTTGGTGGGATTCGAGGAATGTAAATACAATTACAGAACAGCTTGGACATCTGACTTC 1612
Query 1702 TTCAGAGAGAAGTTGATATGTCAAAGATTAAATTTCTAGTCTGTTTTAGTTACTTGTAAA 1761
|||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct 1613 TTCAGAGAGAAGTTGATATGTCAAAGTTTAAATTA-TAGTCTGTTTTAGTTTCTTGTAAA 1671
Query 1762 ATAGGGTTTCTCAGTTTTATT 1782
||||| ||||||||||| |||
Sbjct 1672 ATAGGTTTTCTCAGTTT-ATT 1691
Score = 523 bits (283), Expect = 2e-147
Identities = 350/379 (92%), Gaps = 18/379 (5%)
Strand=Plus/Plus
Query 6 TTGAAATTCTCTTG---TCTGATTAAAATATATATACCCAAGTCCAGAAGCTGTTTAGGT 62
|||||||||||||| ||||||| | ||| | |||||||||||||||||||||||||||
Sbjct 2 TTGAAATTCTCTTGTCTTCTGATT-AGATA-A-ATACCCAAGTCCAGAAGCTGTTTAGGT 58
Query 63 TCGAGAAGCAGAGAGGGTTCGAGAAGCTAATAAG-GGTTTCTTCTTTTTGATTTTAATGC 121
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 59 TCGAGAAGCAGAGAGGGTTCGAGAAGCTAATAAAAGGTTTCTTCTTTTTGATTTTAATGC 118
Query 122 TAAAAGGGTTCTAGATTCGTTGAATTTTACAAGGGTTTTAGGGGTTCTTAGAAGCTTTTG 181
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 119 TAAAAGGGTTCTAGATTCGTTGAATTCTACAAGGGTTTTAGGGGTTCTTAGAAGCTTTTG 178
Query 182 CTTGATTGTCTTTTATTTAGAAACAGTGGTGAG-TTTTTAGTCTTTCACTTTGTTCAAGT 240
|||||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||||
Sbjct 179 TTTGATTGTCTTT-ATTTAGAAACAGTGGTGAGGTTTTT-GTCTCTCACTTTGTTCAAGT 236
Query 241 TCGAAGCtttttttGGAGGGAATTTTGGGCTTCTGATTTTGA-TC---GA---AA-CTTA 292
| ||||||||||||||||||||||||||| |||||||||||| || || || | ||
Sbjct 237 TTGAAGCTTTTTTTGGAGGGAATTTTGGGTTTCTGATTTTGAATCTTTGATCGAAACATA 296
Query 293 CTGATAGTAAGTTCTTTGAGTCCTCCTTAACTGTAGTTTCTGTGTACTGAAGTTATTGAA 352
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 297 GTGATAGTAAGTTCTTTGAGTCCTCCTTAACTCTAGTTTCTGTGTACTCAAGTTATTGAA 356
Query 353 TTGAAAGTTTTTATCTTTT 371
|||||||||||||||||||
Sbjct 357 TTGAAAGTTTTTATCTTTT 375
Score = 152 bits (82), Expect = 9e-36
Identities = 86/88 (98%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1817 GTTTATTTATCACTTGTATGATCTTTCACAGTTCATTGTAGCAGACTTCAATGGTAATGA 1876
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 GTTTATTTATCACATGTATGATCTTTCACAGTTCATTGTAGCAGACTTCAATGGTAATGA 1744
Query 1877 TAAGCTAGAGCTTATGGATAGTATTCAT 1904
|||||||||||||||||||| |||||||
Sbjct 1745 TAAGCTAGAGCTTATGGATATTATTCAT 1772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71533480110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5