BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18890.1
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492971 jgi|Araly1|492971|fgenesh2_kg.7__2404__AT4G18890.1 1790 0.0
> Ahg492971 jgi|Araly1|492971|fgenesh2_kg.7__2404__AT4G18890.1
Length=1239
Score = 1790 bits (969), Expect = 0.0
Identities = 1102/1162 (95%), Gaps = 26/1162 (2%)
Strand=Plus/Plus
Query 84 TTAGAAGAAGAGGCAGTTAAAACAGAGAGACGACGTCG--TGTTATT-TT-TCCAAATTC 139
||||||||||||| |||||||||||||| |||||| || | || || || |||||||||
Sbjct 45 TTAGAAGAAGAGGAAGTTAAAACAGAGAAACGACGCCGTTTTTTTTTCTTCTCCAAATTC 104
Query 140 CGGTGATCTGAGAATGACGTCGGGGACTAGAACGCCGACTTGGAAAGAGAGAGAGAACAA 199
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 CGGTGATCTGAAAATGACGTCGGGGACTAGAACGCCGACTTGGAAAGAGAGAGAGAACAA 164
Query 200 CAAACGGCGAGAGCGGCGAAGACGAGCGATTGCGGCTAAGATCTTCGCAGGACTAAGGAT 259
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 165 CAAACGGCGAGAGCGGCGAAGACGCGCGATTGCGGCTAAGATCTTCGCAGGACTAAGGAT 224
Query 260 TCATGGAAACTTCAAGCTCCCTAAACACTGCGACAACAATGAAGTCCTCAAAGCTTTATG 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TCATGGAAACTTCAAGCTCCCTAAACACTGCGACAACAATGAAGTCCTCAAAGCTTTATG 284
Query 320 CAATGAAGCTGGTTGGACTGTAGAAGACGACGGAACTACTTACCGCAAGGGATGCAAACC 379
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 CAATGAAGCTGGCTGGACTGTAGAAGACGACGGAACTACTTACCGCAAGGGATGCAAACC 344
Query 380 AATGGATCGAATGGACCTCATGAATGGTTCTACTTCAGCTAGTCCATGCTCATCGTATCA 439
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 345 AATGGATCGAATGGAACTCATGAATGGTTCTACTTCAGCGAGTCCATGCTCATCGTATCA 404
Query 440 ACATAGCCCTCGTGCTTCCTACAATCCAAGCCCTTCGTCTTCATCATTCCCGAGTCCTAC 499
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 405 ACATAGCCCTCGTGCTTCCTACAATCCAAGCCCTTCATCTTCATCATTCCCAAGTCCTAC 464
Query 500 AAACCCATTTGGTGATGCTAACTCACTAATCCCATGGCTCAAGAACCTCTCTTCAAACTC 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 AAACCCATTTGGTGATGCTAACTCACTAATCCCATGGCTCAAGAACCTCTCTTCAAACTC 524
Query 560 ACCTTCCAAGCTTCCCTTCTTCCATGGAAATTCAATAAGCGCTCCCGTGACTCCGCCATT 619
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 525 ACCTTCCAAGCTTCCCTTCTTCCATGGGAATTCGATAAGCGCTCCCGTGACTCCACCATT 584
Query 620 GGCTCGAAGCCCTACTCGTGATCAAGTAACCATCCCTGACTCTGGATGGCTCTCAGGAAT 679
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 585 GGCTCGAAGCCCTACTCGTGATCAAGTAACCATCCCTGACTCTGGATGGCTCTCTGGAAT 644
Query 680 GCAAACTCCGCAGAGCGGACCGTCTTCTCCTACTTTCAGTTTAGTTTCAAGAAACCCGTT 739
||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 645 GCAAACTCCACAGAGTGGACCTTCTTCTCCTACCTTCAGTTTAGTTTCAAGAAACCCGTT 704
Query 740 TTTCGACAAAGAGGCTTTTAAAATGGGAGATTGTAATTCACCAATGTGGACTCCTGGACA 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TTTCGACAAAGAGGCTTTTAAAATGGGAGATTGTAATTCACCAATGTGGACTCCTGGACA 764
Query 800 AAGTGGAAACTGCTCTCCAGCTATTCCTGCTGGTGTTGATCAGAACTCTGATGTGCCAAT 859
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 765 AAGTGGAAACTGCTCTCCAGCTATTCCTGCTGGTGTTGATCAAAACTCTGATGTGCCAAT 824
Query 860 GGCTGATGGAATGACGGCTGAGTTTGCGTTTGGTTGTAACGCAATGGCTGCGAATGGAAT 919
||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 825 GGCTGATGGAATGGCGGCTGAGTTTGCGTTTGGTTGTAACGCAATCGCTGCGATTGGAAT 884
Query 920 GGTGAAGCCTTGGGAAGGAGAAAGGATACATGGAGAATGTGTTTCAGATGATTTAGAACT 979
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 885 GGTGAAGCCTTGGGAAGGAGAAAGAATACATGGAGAATGTGTTTCAGATGATTTAGAACT 944
Query 980 TACACTTGGAAACTCAAGAACCAGATGATCATTTCAGAGAAGAATCAAAGTCGTTTGCTA 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TACACTTGGAAACTCAAGAACCAGATGATCATTTCAGAGAAGAATCAAAGTCGTTTGCTA 1004
Query 1040 TCATTAAGTCTTCTTTTTTGTCTGTCttttttttCCAGTGTGATGTTTAAAGGTGACTCA 1099
||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1005 TCATTAATTCTTCTTCTTTGTCTGTTTTTTTTTTTCAGTGTGATGTTTAAAGGTGACT-- 1062
Query 1100 GAGgaaaa-aaaggagaatagaaagagaaac-aaaaaaagaaCATTTTGAGCTCTGtttt 1157
|||||||| ||| || | ||||| |||| ||||||||||||||||||||||||||||
Sbjct 1063 GAGGAAAAGAAAA-AGGA--GAAAG-GAAAGGAAAAAAAGAACATTTTGAGCTCTGTTTT 1118
Query 1158 cttttttttttttctttttttttttGTTGGCTTTTGACTAAAGTT-GTAGTTAGAATCTA 1216
||||||||||| || |||||||||||||||||||| |||| |||||||||
Sbjct 1119 -TTTTTTTTTTT-CT----------GTTGGCTTTTGACTAAAGTTTGTAGGTAGAATCTA 1166
Query 1217 TTTTATATCTTGAAGCTTCTTT 1238
|||||||||| ||||||| |||
Sbjct 1167 TTTTATATCTCGAAGCTT-TTT 1187
Score = 69.4 bits (37), Expect = 6e-11
Identities = 44/47 (94%), Gaps = 2/47 (4%)
Strand=Plus/Plus
Query 16 AAAACAAAAATAAAGCGCGAAATTAGTTTTCACCGGCGAGATTTTTT 62
|||| ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1 AAAA-AAAAATAAAGCGCGAAATTAGTTTTCACCGGGGAG-TTTTTT 45
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48721087926
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5