BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18900.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946293 jgi|Araly1|946293|scaffold_702522.1 841 0.0
Ahg492970 jgi|Araly1|492970|fgenesh2_kg.7__2403__AT4G18905.1 750 0.0
> Ahg946293 jgi|Araly1|946293|scaffold_702522.1
Length=1440
Score = 841 bits (455), Expect = 0.0
Identities = 629/711 (88%), Gaps = 20/711 (3%)
Strand=Plus/Plus
Query 686 AAGGTAGCCACACT-AGATCAGTTCTTGGTCTTGCTTGGAATAAGGAGTTTCGGAATATA 744
|||||||||| ||| || |||||| |||||||||||||||| ||||||||||||||||||
Sbjct 718 AAGGTAGCCATACTAAG-TCAGTTATTGGTCTTGCTTGGAACAAGGAGTTTCGGAATATA 776
Query 745 CTTGCTAGT-GCTAGTGCCGACAAAAAAGTTAAGGTATGGGATGTGGCTACTGGAACGTG 803
||||||||| || |||| ||||||| ||||||| || |||||||| ||||||| ||| ||
Sbjct 777 CTTGCTAGTGGC-AGTGTCGACAAACAAGTTAAAGTTTGGGATGTTGCTACTGAAACATG 835
Query 804 TAAGATTACTATGGAGCATCACACAAAGGAGGTTCAAGCGGTTGCTTGGAACCATTATGC 863
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 836 CCAGATTACTCTGGAGCATCACACAAAGGGGGTTCAAGCGGTTGCTTGGAACCATTATGC 895
Query 864 TCCAGAAGTGCTTCTCAGTGGGTCCTTTGATCAAACTGTTGTATTGAAAGACGGAAGACA 923
||| ||||| ||||| |||||||| ||||||| ||||||||||||||||| | |||| |
Sbjct 896 TCCGGAAGTACTTCTTAGTGGGTCATTTGATCGCACTGTTGTATTGAAAGATGTAAGA-A 954
Query 924 A-CCTTCACACTCGGGTTTCAAATGGTCTGTCATGTCCGATGTTGAAAGCTTAGCCTGGG 982
| |||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||
Sbjct 955 AGCCTTCACACTCGGGTTTCAAATGGTCAGTCATTTCCAAAGTTGAAAGCTTAGCCTGGG 1014
Query 983 ATCCTCATAGTGAACACTCCTTTGTGGTAAGTCTCGAAGATGGAACTGTCAAGGGCTTTG 1042
|||| ||||| ||| |||||||| |||| |||||| ||||||||||||| ||||| ||||
Sbjct 1015 ATCCACATAGCGAATACTCCTTTTTGGTTAGTCTCAAAGATGGAACTGTGAAGGGTTTTG 1074
Query 1043 ATGTACGTCAAGCCTCCATTTCAGCCTCTGAATCAAATCCAAGCTTCACTAT--TA-ATG 1099
|||| ||||||||||| | |||| ||||||| ||||||||||| |||||| | | |||
Sbjct 1075 ATGTTCGTCAAGCCTCAACTTCAACCTCTGATTCAAATCCAAGTTTCACTCTCCAACATG 1134
Query 1100 GACATGACGAAGCAGCT-ACTTCCGTCTCATACAACATTTCGGCACCTAATCTTTTGGCA 1158
||| | | |||||| | |||||| ||||||||||| |||| ||||||||||||||||||
Sbjct 1135 GACGT-A--AAGCAG-TCACTTCCATCTCATACAACGTTTCTGCACCTAATCTTTTGGCA 1190
Query 1159 ACGGGATCTAAGGATAGAA-CGGTAAAGCTTTGGGATCTTTCAAACAATGAGCCTTCATG 1217
|| ||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1191 ACTGGATCTACGGAT-CAATCGGTAAAGCTTTGGGATCTTTCAAACAATGAACCTTCATG 1249
Query 1218 CATTGCTACACA-CAATCCAAATGCTGGAGGCTTATTCTT-CATTGCTTTCTCTCCGGAC 1275
|||||||||||| | | |||||||||||| ||||||| || |||||| |||||| |||||
Sbjct 1250 CATTGCTACACACCGA-CCAAATGCTGGACGCTTATT-TTCCATTGCCTTCTCTACGGAC 1307
Query 1276 AATCCTTTCTTACTCGCTATGGGTGGCGTAATGGGGGAGTTAAAACTTTGGGATACACTT 1335
||||||||||||||||||||||||||| | ||||| |||||||| ||||||||| ||||
Sbjct 1308 AATCCTTTCTTACTCGCTATGGGTGGCCTTATGGGCAAGTTAAAAGTTTGGGATATACTT 1367
Query 1336 TCGGACACTAATGTCTCCAGCAGATACGGAAGCAGAGAAGTCCGACCGTGA 1386
|||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1368 TCGGACACTAATGTCTCCAGCAGATACGGAAGCAGACAAGTCCGACCATGA 1418
Score = 246 bits (133), Expect = 3e-64
Identities = 219/257 (85%), Gaps = 19/257 (7%)
Strand=Plus/Plus
Query 14 AACTTCCTTCTAAGGAGGAAATCGAAATGCACAAAGACAGTTGTAAATATTT-CAGTAAT 72
||||||||||||||||||||||||||| || | |||| |||||| ||| ||| ||| |
Sbjct 82 AACTTCCTTCTAAGGAGGAAATCGAAAAGCTCGAAGAGAGTTGTGAAT-TTTACAGCGAG 140
Query 73 GATACAGAAGAAGAAGAGACCGAGGATGAAGAAGAGAATGGTGAAGTTGCTCATGCGAAA 132
||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 141 GAT---GAAGAAGAAGAAACCGATGATGAAGAAGAGAATGGTGATGTTGCTCATGCAAAA 197
Query 133 GCCGTAGCAG-AAGAGTTTGGAAAATCATCCAAAAGCAAGAATG--------T-TTCTTC 182
|| |||| | |||| ||||||||||| |||||||||||||||| | ||||||
Sbjct 198 GCAATAGC-GAAAGAATTTGGAAAATCTTCCAAAAGCAAGAATGCTTCTTCTTCTTCTTC 256
Query 183 TTCAATGGAGCTTGATGATGAGGTAGCTGAGGGTTTGAAAGAACTCGACATGGATAATTA 242
|||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 257 TTCAATGGAG---GTTGATGAGGTAGCTGATGGTTTGAAAGAACTTGACATGGATAATTA 313
Query 243 CGATGAAGAGGATGATG 259
|||||||||||||||||
Sbjct 314 CGATGAAGAGGATGATG 330
Score = 163 bits (88), Expect = 3e-39
Identities = 186/232 (80%), Gaps = 12/232 (5%)
Strand=Plus/Plus
Query 440 TTTATGTATCCGAGGACACATCCCATGGTTCTCCAAATATGTATAATCATCATTACAGA- 498
||||||||| |||||| ||||| |||| |||||||| || |||| |||||| | | |
Sbjct 400 TTTATGTATGCGAGGAGACATCTAATGGCTCTCCAAACATCTATAGTCATCAGGA-A-AT 457
Query 499 ATT-ATACCAGCAA-TTCCATTGTGTACTGCTTGGCTTGATTGTCCACTTAAAGGAGGAG 556
||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 458 ATTGCTACCA-AAACCTCCAATGTGTACTGCTTGGCTTGATTGTCCACTTAAAGGAGGAG 516
Query 557 AAAGAGGGAATTTCCTAGCTGTTGGTTCGGATGGGACGC-CAACAATAGAGATATGGGAT 615
||| ||||||||| |||| ||||||| | | |||| | |||||||||||||||||
Sbjct 517 AAAAAGGGAATTTTGTAGCGGTTGGTTTGTTTAAAACGCACG-CAATAGAGATATGGGAT 575
Query 616 CTTGATGCT-TG-GTTCGACATGCTACCTTGTGTACAACTAGGAGGACAAAA 665
||||| | || | ||| || |||| || ||||||||||||||| ||||
Sbjct 576 CTTGACATTATGCG--CGAGTTGTTACCCTGCGTACAACTAGGAGGAAAAAA 625
> Ahg492970 jgi|Araly1|492970|fgenesh2_kg.7__2403__AT4G18905.1
Length=1858
Score = 750 bits (406), Expect = 0.0
Identities = 604/695 (87%), Gaps = 32/695 (5%)
Strand=Plus/Plus
Query 676 AAC-TATAAACAAGGTAGCCACACTAGA-TCAGTTCTTGGTCTTGCTTGGAATAAGGAGT 733
||| || ||| |||||||||| ||| || ||||| ||||||||||||||||| |||||||
Sbjct 877 AACGTACAAAGAAGGTAGCCATACT-GATTCAGTACTTGGTCTTGCTTGGAACAAGGAGT 935
Query 734 TTCGGAATATACTTGCTAGTGCTAGTGCCGACAAAAAAGTTAAGGTATGGGATGTGGCTA 793
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 936 TTCGGAACATACTTGCTAGTGCTAGTGCCGACAAAAAAGTTAAGGTCTGGGATGTGGCTA 995
Query 794 CTGGAACGTGTAAGATTACTATGGAGCATCACACAAAGGAGGTTCAAGCGGTTGCTTGGA 853
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 CTGGAATATGTAAGATTACTATGGAGCATCACACAAAGGAGGTTCAAGCGGTTGCTTGGA 1055
Query 854 ACCATTATGCTCCAGAAGTGCTTCTCAGTGGGTCCTTTGATCAAACTGTTGTATTGAAAG 913
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1056 ACCATTATGCTCCAGAAGTGCTTCTCAGTGGGTCGTTTGATCAAACTGTTGTCTTGAAAG 1115
Query 914 ACGGAAGACAACCTTCACACTCGGGTTTCAAATGGTCTGTCATGTCCGATGTTGAAAGCT 973
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 1116 ACGGAAGACAACCTTCACACTCAGGTTTCAAATGGTCTGTCATGTCTGATGTCGAAAGCT 1175
Query 974 TAGCCTGGGATCCTCATAGTGAACACTCCTTTGTGGTAAGTCTCGAAGATGGAACTGTCA 1033
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 1176 TAGCCTGGGATCCTCATAGTGAACACTCCTTTGTGGTAAGTCTTGAAGATGGAACCGTGA 1235
Query 1034 AGGGCTTTGATGTACGT-CAAGC-C--TCCAT-TTCAGCCTCTGAATCAAATCCAAGCTT 1088
| || |||||| ||||| | || | || | ||||| ||||| | ||| ||||| ||
Sbjct 1236 AAGGTTTTGATATACGTGCT-GCACAGTC-AGGTTCAGATTCTGATTTAAAACCAAGTTT 1293
Query 1089 CACTATT-AATGGACATGACGAAG-CA--G----CTACTTCCGTCTCATACAACATTTCG 1140
|||||| || | ||||||| ||| || | || || || ||||||||||||||||
Sbjct 1294 CACTATCCAA-GCACATGACCAAGACAAAGGAGTCTCCT-CCATCTCATACAACATTTCT 1351
Query 1141 GCACCTAATCTTTTGGCAACGGGATCTAAGGATAGAACGGTAAAGCTTTGGGATCTTTCA 1200
|||| ||||||||||| ||||| |||| ||||| ||||||||| |||||||||||||||
Sbjct 1352 TCACCCAATCTTTTGGCTACGGGGTCTATGGATAAAACGGTAAAACTTTGGGATCTTTCA 1411
Query 1201 AACAATGAGCCTTCATGCATTGCTACACACAATCCAAATGCTGGAGGCT-TATTCTTC-A 1258
|||||||| ||||||||||||||||||||||| ||||| ||||||| || | || ||| |
Sbjct 1412 AACAATGAACCTTCATGCATTGCTACACACAAACCAAAAGCTGGAG-CTGTGTT-TTCCA 1469
Query 1259 TTGC-TTT-CTCTCCGGACAATCCTTTCTTACTCGCTATGGGTGGCGT-AATGGGGGAGT 1315
|| | ||| | | |||||| |||||||| || ||||| |||||| | || ||| |||
Sbjct 1470 TTTCCTTTGCGGT--GGACAACCCTTTCTTGCTTGCTATCGGTGGC-TCAAAGGGAGAGC 1526
Query 1316 TAAAACTTTGGGATACACT-TTCGGACACTAATGT 1349
|| | ||||||||||||| || |||| |||||||
Sbjct 1527 TACATGTTTGGGATACACTGTT-GGACGCTAATGT 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5