BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18905.2
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492970 jgi|Araly1|492970|fgenesh2_kg.7__2403__AT4G18905.1 2519 0.0
Ahg946293 jgi|Araly1|946293|scaffold_702522.1 610 1e-173
> Ahg492970 jgi|Araly1|492970|fgenesh2_kg.7__2403__AT4G18905.1
Length=1858
Score = 2519 bits (1364), Expect = 0.0
Identities = 1649/1776 (93%), Gaps = 61/1776 (3%)
Strand=Plus/Plus
Query 45 AAATCTTCAATTGTTAAACCCTAAACCTACAAAAGTCTTGACTTTGTTTGTTGCTCATCT 104
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
Sbjct 1 AAATCTTCAATTGTTAAACCCTAAACCTACGAAAGTCTTGACTTTGTTTGCTGCTCATAT 60
Query 105 TCGTTCTTCTCTCTCGATTAAATTCGTTCCGAGAAAGTTAGGTCCCGTTTCTAAACAATG 164
||| | |||||||||| ||||| ||||| ||||||||||||||||| |||| |||
Sbjct 61 TCG------T-TCTCGATTAATTTCGTCCCGAGCAAGTTAGGTCCCGTTTCAAAAC-ATG 112
Query 165 ATAACTGCAGTGTCATGGATACCAAAAGGGAATCTAAAAGCTGTTCCTGATGTTGCTGAG 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 ATAACTGCAGTGTCATGGATACCAAAAGGGAATCTAAAAGCTGTTCCTGATGTTGCTGAG 172
Query 225 CCTCCGTCAAAGGAAGAACTTAAAGAGCTCATTGAGAGTGGTGCTTTTGCAAGAAACGTG 284
||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 173 CCTCCTTCAAAGGAAGAACTTAAAGAGCTCATTGAGAGTGGTGCTTTTGCCAG-AA-GT- 229
Query 285 GAAGGTAGTAACGAGGATgaagaagaagagattgaagaagatggagaagagataagtgaa 344
|| | | || ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 230 -AA--T-G--AC---GAT---GAAGAAGAGATTGAAGAGGATGGAGAAGAGATAAGTGAA 277
Query 345 gTTGATCATGCCAAGGCTGTAGCTGAAGCTTTGGGTAAATCTTCTAAAAGCAAG-GCTGT 403
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 278 GTTGATCATGCCAAGGCTGTAGCTGAAGCTTTTGGTAAATCTTCTAAAAGCAAGAG-TGC 336
Query 404 TTCTTCTTCAATGGAGGTTGATGAGGTTTCTCAAGGATTGAAAGAACTTGACATGGATAA 463
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 337 TTCTTCTTCAATGGAGGTTGATGAGGTAGCTCAAGGATTGAAAGAACTTGACATGGATAA 396
Query 464 TTATGATGAAGAGGATGATGAAATTGAACTTTTCAGTTCTGGAATGGGGGATCTTTATTA 523
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 397 TTATGATGAAGAGGATGACGGAATTGAACTTTTCAGTTCTGGAATGGGGGATCTTTATTA 456
Query 524 TCCAAGTAatgagatggatccatatctgaaagatgttgatgatgaagatgatgaagagga 583
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 457 TCCAAGTAATGAGATGGATCCATATCTGAAGGATGTTGATGACGAGGATGATGAAGAGGA 516
Query 584 tattgatgaCACGACAGTCAAGCCGACCGATTCGGTGATTATTTGTGCTAGGAATGAAGA 643
||||||||| |||||||||||||| || ||||| |||||||| || ||||||||||||||
Sbjct 517 TATTGATGATACGACAGTCAAGCCAACTGATTCAGTGATTATCTGCGCTAGGAATGAAGA 576
Query 644 TGATGTTAGCCATCTAGAGGTTTATTTATACGAGGAATCGTCTGGCTCTCCAAACATGTA 703
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 577 TGATGTCAGCCATCTAGAGGTTTACGTATACGAGGAATCGTCTGGCTCTCCAAACATGTA 636
Query 704 TGTTCATCATCACATAATTATACCAGAATTCCCATTGTGTACTGCATGGCTTGATTGTCC 763
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 637 TGTTCATCATCACATAATTATACCGGAATTCCCATTGTGTACTGCATGGATTGATTGTCC 696
Query 764 TCTTAAAGGAGGGGAAAAAGGGAATTTTGTAGCTATTGGTTCAAAGG-ATACACCGACAA 822
||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 697 TCTTAAAGGAGGGGAAAAAGGGAATTTTGTAGCTATTGGTTCAAAGGAAT-CGCCGACAA 755
Query 823 TCGAGATATGGGATCTTGACGTTAGGGACGAGGTGCTACCTTGTATACAACTAGGAGGAA 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 TCGAGATATGGGATCTTGACGTTAGGGACGAGGTGCTACCTTGTATACAACTAGGAGGAA 815
Query 883 TAGAGGAGATGATAGTGAGTAAGAAAAAGAAGAGCAAGAAACAGA-AACCGGTGTGTGCA 941
|||||||||||||||||||||||||||||||| ||| || ||| || | | | ||
Sbjct 816 CAGAGGAGATGATAGTGAGTAAGAAAAAGAAGAATAAG-AA-AGATAA--GAT-T-TG-- 867
Query 942 TCAAACTCGTCTATCTCTAGTTCGT-CTATGGCAA-GTTCCCATACTGAGTCAGTACTTG 999
|| | | | | | | ||| | | | || || ||||||||| ||||||||||
Sbjct 868 TC-TA-T-GGC-A-----A--ACGTAC-AAAG-AAGGTAGCCATACTGATTCAGTACTTG 914
Query 1000 GTCTTGCTTGGAACAAGGAGTTTCGGAACATACTTGCTAGTGCTAGTGCCGACAAAAAAG 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GTCTTGCTTGGAACAAGGAGTTTCGGAACATACTTGCTAGTGCTAGTGCCGACAAAAAAG 974
Query 1060 TTAAGGTCTGGGATGTGGCTACTGGGACGTGTAAGATTACTATGGAGCATCACACAAAGG 1119
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 975 TTAAGGTCTGGGATGTGGCTACTGGAATATGTAAGATTACTATGGAGCATCACACAAAGG 1034
Query 1120 AGGTTCAAGCGGTTGCTTGGAACCATTATGCTCCAGAAGTGCTTCTCAGTGGGTCGTTTG 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 AGGTTCAAGCGGTTGCTTGGAACCATTATGCTCCAGAAGTGCTTCTCAGTGGGTCGTTTG 1094
Query 1180 ATCAAACTGTTGTCATGAAAGACGGAAGACAACCTTCACACTCGGGTTTCAAATGGTCTG 1239
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1095 ATCAAACTGTTGTCTTGAAAGACGGAAGACAACCTTCACACTCAGGTTTCAAATGGTCTG 1154
Query 1240 TCATGTCTGATGTCGAAAGCTTAGCCTGGGATCCTCATTGCGAACACTCCTTTGTGGTAA 1299
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1155 TCATGTCTGATGTCGAAAGCTTAGCCTGGGATCCTCATAGTGAACACTCCTTTGTGGTAA 1214
Query 1300 GTCTTGAAGATGGAACCGTGAAGGGTTTTGATATACGTGCTGCACAGTCAGGTTCAGATT 1359
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1215 GTCTTGAAGATGGAACCGTGAAAGGTTTTGATATACGTGCTGCACAGTCAGGTTCAGATT 1274
Query 1360 CTGATTTAAACCCAACTTACACTATCCAAGCACATGCCCAAGACAGAGGAGTCTCCTCCA 1419
|||||||||| |||| || ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1275 CTGATTTAAAACCAAGTTTCACTATCCAAGCACATGACCAAGACAAAGGAGTCTCCTCCA 1334
Query 1420 TCTCATACAACATTTCTACACCCAATCTTTTGGCTACGGGGTCTATGGATAAATCGGTAA 1479
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1335 TCTCATACAACATTTCTTCACCCAATCTTTTGGCTACGGGGTCTATGGATAAAACGGTAA 1394
Query 1480 AGCTTTGGGATCTTTCAAACAATGAACCTTCATGCATTGCTACACACCAACCAAATGCTG 1539
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1395 AACTTTGGGATCTTTCAAACAATGAACCTTCATGCATTGCTACACACAAACCAAAAGCTG 1454
Query 1540 GAGCTGTGTTTTCCATTTCCTTTGCGGTGGACAACCCTTTCTTGCTTGCTATTGGTGGCT 1599
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1455 GAGCTGTGTTTTCCATTTCCTTTGCGGTGGACAACCCTTTCTTGCTTGCTATCGGTGGCT 1514
Query 1600 CAAAGGGAGAGCTACATGTTTGGGATACACTGTTGGATGCTAATGTCGCTCGCAAATATG 1659
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1515 CAAAGGGAGAGCTACATGTTTGGGATACACTGTTGGACGCTAATGTTGCTCGCAAATATG 1574
Query 1660 GGAGCAATAGATCTTGAAAAGACCC---GCAAGGATA-ACTTGTCTCTTTGAAGCTGTGA 1715
|||||||| |||||||||||||||| ||||||| | ||||||||||||||||||||||
Sbjct 1575 GGAGCAATCGATCTTGAAAAGACCCCCCGCAAGGA-ACACTTGTCTCTTTGAAGCTGTGA 1633
Query 1716 TGGTTGTTAGATTCGATCACACTCATGCCAAAttttgc-gctttcttttcttctttttct 1774
|||| ||||||||||||||||||||||||||||||||| | |||||||||||||||| ||
Sbjct 1634 TGGTCGTTAGATTCGATCACACTCATGCCAAATTTTGCAG-TTTCTTTTCTTCTTTT-CT 1691
Query 1775 ttaggcttgttttATCTCTCATATGATTATGGTTAT 1810
|||||||||||||||||| ||||||||||||||||
Sbjct 1692 TTAGGCTTGTTTTATCTC--ATATGATTATGGTTAT 1725
> Ahg946293 jgi|Araly1|946293|scaffold_702522.1
Length=1440
Score = 610 bits (330), Expect = 1e-173
Identities = 581/698 (83%), Gaps = 33/698 (5%)
Strand=Plus/Plus
Query 980 CCATACTGAGTCAG-TACTTGGTCTTGCTTGGAACAAGGAGTTTCGGAACATACTTGCTA 1038
||||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 725 CCATACTAAGTCAGTTA-TTGGTCTTGCTTGGAACAAGGAGTTTCGGAATATACTTGCTA 783
Query 1039 GT-GCTAGTGCCGACAAAAAAGTTAAGGTCTGGGATGTGGCTACTGGGACGTGTAAGATT 1097
|| || |||| ||||||| ||||||| || |||||||| ||||||| || || |||||
Sbjct 784 GTGGC-AGTGTCGACAAACAAGTTAAAGTTTGGGATGTTGCTACTGAAACATGCCAGATT 842
Query 1098 ACTATGGAGCATCACACAAAGGAGGTTCAAGCGGTTGCTTGGAACCATTATGCTCCAGAA 1157
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 843 ACTCTGGAGCATCACACAAAGGGGGTTCAAGCGGTTGCTTGGAACCATTATGCTCCGGAA 902
Query 1158 GTGCTTCTCAGTGGGTCGTTTGATCAAACTGTTGTCAT-GAAAGACGGAAGACAA-CCTT 1215
|| ||||| |||||||| ||||||| |||||||| || |||||| | |||| || ||||
Sbjct 903 GTACTTCTTAGTGGGTCATTTGATCGCACTGTTGT-ATTGAAAGATGTAAGA-AAGCCTT 960
Query 1216 CACACTCGGGTTTCAAATGGTCTGTCATGTCTGATGTCGAAAGCTTAGCCTGGGATCCTC 1275
|||||||||||||||||||||| ||||| || | || |||||||||||||||||||| |
Sbjct 961 CACACTCGGGTTTCAAATGGTCAGTCATTTCCAAAGTTGAAAGCTTAGCCTGGGATCCAC 1020
Query 1276 ATTGCGAACACTCCTTTGTGGTAAGTCTTGAAGATGGAACCGTGAAGGGTTTTGATATAC 1335
|| ||||| |||||||| |||| ||||| |||||||||| ||||||||||||||| | |
Sbjct 1021 ATAGCGAATACTCCTTTTTGGTTAGTCTCAAAGATGGAACTGTGAAGGGTTTTGATGTTC 1080
Query 1336 GTGCT-GCACAGTCAGGTTCAGAT-TCTGATTTAAACCCAACTTACACTATCCAAGCACA 1393
|| | || | ||| |||| | ||||||| ||| |||| || |||| ||||| ||
Sbjct 1081 GT-CAAGC-C--TCAACTTCA-ACCTCTGATTCAAATCCAAGTTTCACTCTCCAA-CA-- 1132
Query 1394 TGCCCAAGACAGAGGAGTCTCCTCCATCTCATACAACATTTCTACACCCAATCTTTTGGC 1453
|| | | | || |||| | ||||||||||||||| ||||| |||| |||||||||||
Sbjct 1133 TGGACGT-A-A-AGCAGTCACTTCCATCTCATACAACGTTTCTGCACCTAATCTTTTGGC 1189
Query 1454 TACGGGGTCTATGGATAAATCGGTAAAGCTTTGGGATCTTTCAAACAATGAACCTTCATG 1513
|| || |||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 AACTGGATCTACGGATCAATCGGTAAAGCTTTGGGATCTTTCAAACAATGAACCTTCATG 1249
Query 1514 CATTGCTACACACCAACCAAATGCTGGA-GCTGTGTTTTCCATTTCCTT-TGCGGTGGAC 1571
|||||||||||||| ||||||||||||| ||| | ||||||||| |||| | | ||||
Sbjct 1250 CATTGCTACACACCGACCAAATGCTGGACGCT-TATTTTCCATTGCCTTCT-CTACGGAC 1307
Query 1572 AACCCTTTCTTGCTTGCTATTGGTGGC-TCAAAGGG-AGAGCTACATGTTTGGGATACAC 1629
|| |||||||| || ||||| |||||| | | ||| | || || | |||||||||| ||
Sbjct 1308 AATCCTTTCTTACTCGCTATGGGTGGCCTTAT-GGGCA-AGTTAAAAGTTTGGGATATAC 1365
Query 1630 TGTT-GGATGCTAATGTCGCTC-GCAAATATGGGAGCA 1665
| || ||| |||||||| | | ||| ||| || ||||
Sbjct 1366 T-TTCGGACACTAATGTCTC-CAGCAGATACGGAAGCA 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72333375255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5