BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18910.1
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492969 jgi|Araly1|492969|fgenesh2_kg.7__2402__AT4G18910.1 1410 0.0
Ahg492953 jgi|Araly1|492953|fgenesh2_kg.7__2386__AT4G19030.1 1018 0.0
> Ahg492969 jgi|Araly1|492969|fgenesh2_kg.7__2402__AT4G18910.1
Length=1086
Score = 1410 bits (763), Expect = 0.0
Identities = 986/1086 (91%), Gaps = 46/1086 (4%)
Strand=Plus/Plus
Query 143 AAATACAGTTATGGCGGAGATCTCGGGAAACGG---TGGT---GATGCTAGAGACGGAGC 196
||| ||||||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 27 AAAAACAGTTATGGCGGAGATCTCGGGGAACGGCCATGGTGGCGATGCTAGAGACGGAGC 86
Query 197 TGTGGTGGTCAATCTCAAGGAAGAAGACGaacaacaacaaca-acaacaaGCTATTC--- 252
||| || || ||||| ||||||||||||||||| |||||||| | || |||||||||
Sbjct 87 TGTTGTAGTGAATCTTAAGGAAGAAGACGAACATCAACAACAGA-AAGAAGCTATTCATA 145
Query 253 A---TAAACCCTTGAAGAAACAAGACTCTCTCCTCTCTATCTCTGTCCCTTTCTTACAAA 309
| ||||||| ||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 146 ATCCTAAACCCATGAAGAAACAAGAGTCTCTCCTCTCAATCTCTGTCCCTTTCTTGCAAA 205
Query 310 AGTTGATGGCGGAGGTTTTGGGAACATACTTCTTGATATTCGCCGGTTGTGCCGCGGTGG 369
||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 206 AGTTGATGGCGGAGGTTCTGGGAACGTACTTCTTGATATTCGCCGGTTGTGCAGCGGTGG 265
Query 370 CTGTAAACACACAACATGACAAAGCCGTGACTCTTCCAGGGATCGCCATCGTTTGGGGAC 429
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 CCGTGAACACACAACATGACAAAGCCGTGACTCTTCCAGGGATCGCCATCGTTTGGGGAC 325
Query 430 TTACCGTCATGGTCCTTGTTTACTCTCTCGGTCACATCTCCGGTGCTCATTTCAATCCGG 489
||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 326 TTACCGTCATGGTTCTTGTTTACTCTCTTGGCCACATCTCCGGTGCTCATTTTAATCCGG 385
Query 490 CCGTCACAATCGCATTCGCTTCTTGCGGCCGTTTCCCTCTTAAACAGGTTCCGGCTTATG 549
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 386 CCGTCACAATCGCATTCGCCTCTTGCGGTCGTTTCCCTCTTAAACAGGTTCCGGCTTATG 445
Query 550 TGATATCACAAGTGATCGGATCAACGCTAGCGGCGGCGACTTTACGGCTCTTGTTCGGAC 609
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 446 TGATATCACAAGTGATCGGATCGACGCTTGCGGCGGCGACTTTACGTCTCTTGTTCGGAC 505
Query 610 TTGATCAAGATGTTTGTAGTGGGAAACACGATGTGTTCGTCGGAACATTACCATCTGGAT 669
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 506 TTGATCAAGACGTTTGTAGTGGCAAACACGATGTGTTCGTCGGAACATTACCATCTGGAT 565
Query 670 CGAATTTGCAGTCGTTTGTGATCGAGTTTATCATTACTTTCTACCTAATGTTCGTTATTT 729
|| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 566 CGGATTTGCAGTCGTTTGTGATTGAGTTTATCATTACTTTCTACCTTATGTTCGTCATTT 625
Query 730 CTGGCGTTGCCACCGATAATAGAGCGATCGGAGAACTTGCTGGACTAGCAGTAGGATCAA 789
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 626 CCGGCGTTGCCACCGATAATAGAGCGATCGGAGAACTTGCCGGACTAGCAGTAGGATCAA 685
Query 790 CAGTGCTACTTAACGTGATAATTGCCGGGCCGGTATCGGGAGCATCGATGAATCCAGGAC 849
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 686 CGGTGCTACTTAACGTGATAATTGCCGGACCGGTATCGGGAGCATCGATGAATCCAGGAC 745
Query 850 GAAGTTTAGGACCTGCAATGGTCTACAGTTGCTACAGAGGACTTTGGATCTACATAGTTT 909
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 746 GAAGTTTAGGACCTGCAATGGTTTATAGTTGCTACAGAGGACTTTGGATCTACATAGTCT 805
Query 910 CTCCAATTGTTGGTGCAGTTTCGGGTGCGTGGGTTTATAACATGGTTCGATATACTGATA 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 806 CTCCAATTGTTGGTGCAGTTTCGGGTGCGTGGGTTTATAACATGGTTCGATATACCGATA 865
Query 970 AGCCATTACGAGAAATAACTAAAAGCGGTTCTTTTTTAAAGACAGTGCGAAACGGTAGCT 1029
| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 866 AACCATTACGAGAAATAACTAAGAGCGGTTCGTTTTTAAAGACCGTGCGAAACGGTAGCT 925
Query 1030 CTCGTTAAGAAAAAGAAAAACATGACTATGTTGTACTAGTCATCGGAGGTTAAGTTGTAT 1089
||||||||| || | || ||||||||||||||||||||||||||
Sbjct 926 CTCGTTAAG-----------CA--A--AT-----ACTAGTCATCGGAGGTTAAGTTGTAT 965
Query 1090 CACTAAAGAAGTAACTGGAATATTTTG-TATTAAAGTGTTTTTAAATTTGGATTACCGCA 1148
|||||| ||||||| ||| ||||||| |||| ||||||||||||||||| ||||||| |
Sbjct 966 CACTAA-GAAGTAATTGGGGTATTTTGGTATTTAAGTGTTTTTAAATTTGAATTACCGTA 1024
Query 1149 AATGGATAAACATTTATGGTATGTGACGAATATG-TAAC----T-GATCTATAACGAGTT 1202
||||||| ||||| | | |||||||||||||| ||| | |||||||||||||||
Sbjct 1025 AATGGATTAACAT--A-G-TATGTGACGAATATTATAAGGGAATTGATCTATAACGAGTT 1080
Query 1203 TGGCCA 1208
|| |||
Sbjct 1081 TGACCA 1086
> Ahg492953 jgi|Araly1|492953|fgenesh2_kg.7__2386__AT4G19030.1
Length=1149
Score = 1018 bits (551), Expect = 0.0
Identities = 841/978 (86%), Gaps = 31/978 (3%)
Strand=Plus/Plus
Query 90 AACAGTCGTTTAAAGTCTGATCCTTTTCATTTTTCTTTAGTGT-GTGAAAAGAG-AAA-T 146
|||||||||||||||| | ||||||||| | |||||| || | ||||||| ||| |
Sbjct 1 AACAGTCGTTTAAAGTTTAATCCTTTTC-CTCTTCTTT-GTTTCCAAAAAAGAGAAAAGT 58
Query 147 ACAGTTATGGCGGAGATCTCGGGAAACGG---TGGTGATGCTAGAGACGGAGCT-GTGGT 202
||||||||||||| |||||||||||||| ||| | || ||||| || | || |
Sbjct 59 -CAGTTATGGCGGATATCTCGGGAAACGGCTATGGCAACGCCAGAGA---AG-TAGTAAT 113
Query 203 GGTCAATCTCAAGGAAGAAGACGaacaacaacaacaaca-acaaGCTATTCAT-A----A 256
||| |||||||||||||||| |||||| ||||||||| | | ||||| || || | |
Sbjct 114 GGTGAATCTCAAGGAAGAAGTCGAACATCAACAACAA-ATAGAAGCTTTTGATAACCCTA 172
Query 257 -ACCCTTGAAGAAACAAGACTCTCTCCTCTCTA-TCTCTGTCCCTTTCTTACAAAAGTTG 314
||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 173 CACCCTTGAAGAAACAAGACTCCCTCCTCTC-AGTCTCTGTCCCTTTCTTACAAAAGTTG 231
Query 315 ATGGCGGAGGTTT-TGGGAACATACTTCTTGATATTCGCCGGTTGTGCCGCGGTGGCTGT 373
|| ||||| |||| | ||||| ||||| ||| ||||| |||||||||| |||||| |||
Sbjct 232 ATCGCGGA-GTTTCTTGGAACCTACTTTTTGGTATTCACCGGTTGTGCATCGGTGGTTGT 290
Query 374 AAACACACAACATGACAAAGCCGTGACTCTTCCAGGGATCGCCATCGTTTGGGGACTTAC 433
||||| ||| | ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 291 AAACATGCAAAACGACAATGTCGTGACTCTTCCAGGGATCGCCATCGTTTGGGGACTTAC 350
Query 434 CGTCATGGTCCTTGTTTACTCTCTCGGTCACATCTCCGGTGCTCATTTCAATCCGGCCGT 493
| |||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 351 CATCATGGTCCTCATTTACTCTCTTGGTCACATCTCCGGTGCTCATATCAATCCGGCCGT 410
Query 494 CACAATCGCATTCGCTTCTTGCGGCCGTTTCCCTCTTAAACAGGTTCCGGCTTATGTGAT 553
|| || || ||||| |||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 411 TACCATAGCCTTCGCGTCTTGCGGCCGTTTTCCTCTCAAACAGGTTCCGGCTTATGTCAT 470
Query 554 ATCACAAGTGATCGGATCAACGCTAGCGGCGGCGACTTTACGGCTCTTGTTCGGACTTGA 613
|||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||
Sbjct 471 ATCACAAGTGATCGGATCAACGCTCGCGGCTGCGACTTTACGGTTGTTGTTCGGACTTGA 530
Query 614 TCAAGATGTTTGTAGTGGGAAACACGATGTGTTCGTCGGAACATTACCATCTGG-ATCGA 672
||| || |||||||| |||||||| |||||||| ||||| ||| ||| ||| ||||
Sbjct 531 TCACGACGTTTGTAGCGGGAAACATGATGTGTTTATCGGATCATCACCGG-TGGGATCGG 589
Query 673 ATTTGCAGTCGTTTGTGATCGAGTTTATCATTACTTTCTACCTAATGTTCGTTATTTCTG 732
|| ||||| |||||||||| |||||||| | |||||||| ||||||||| | |||||||
Sbjct 590 ATCTGCAGGCGTTTGTGATGGAGTTTATTGTCACTTTCTATCTAATGTTCATCATTTCTG 649
Query 733 GCGTTGCCACCGATAATAGAGCGATCGGAGAACTTGCTGGACTAGCAGTAGGATCAACAG 792
||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| |
Sbjct 650 GCGTTGCTACCGATAATAGAGCGATCGGAGAACTTGCTGGATTAGCAATAGGATCAACGG 709
Query 793 TGCTACTTAACGTGATAATTGCCGGGCCGGTATCGGGAGCATCGATGAATCCAGGACGAA 852
|||||||||||||| ||||||||| ||||||||| | || ||||||||||||||| |||
Sbjct 710 TGCTACTTAACGTGCTAATTGCCGCACCGGTATCGAGTGCGTCGATGAATCCAGGAAGAA 769
Query 853 GTTTAGGACCTGCAATGGTCTACAGTTGCTACAGAGGACTTTGGATCTACATAGTTTCTC 912
||||||||||||||||||| ||| ||||||||| |||| ||||||||||||||||| |||
Sbjct 770 GTTTAGGACCTGCAATGGTGTACGGTTGCTACAAAGGAATTTGGATCTACATAGTTGCTC 829
Query 913 CAATTGTTGGTGC-AGTTTCGGGTGCGTGGGTTTATAACATGGTTCGATATACTGATAAG 971
||| | ||||||| | || ||||||| ||||||||||||| |||| ||||||| |||||
Sbjct 830 CAACTCTTGGTGCCA-TTGCGGGTGCATGGGTTTATAACACGGTTAGATATACCGATAAA 888
Query 972 CCATTACGAGAAATAACTAAAAGCGGTTCTTTTTTAAAGACAGTGCGAAACGGTAGCTCT 1031
||||| ||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||
Sbjct 889 CCATTGCGAGAAATAACTAAAAGTGGTTCGTTTTTAAAGACCGTGCGAATCGGTAGCTCT 948
Query 1032 CGTTAAGA-AAAAGAAAA 1048
| ||| | |||||||||
Sbjct 949 TGATAAAAGAAAAGAAAA 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46281221238
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5