BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18920.1
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890287 jgi|Araly1|890287|Al_scaffold_0007_2273 582 1e-165
> Ahg890287 jgi|Araly1|890287|Al_scaffold_0007_2273
Length=774
Score = 582 bits (315), Expect = 1e-165
Identities = 353/372 (95%), Gaps = 0/372 (0%)
Strand=Plus/Plus
Query 30 ATGGCATCGAGTGATAAGGTTCCGGTGGCGTGTCCGGCAAGCAGTGGAGATGGAAAGGAG 89
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCATCGAGTGATAAGGTTCCAGTGGCGTGTCCGGCAAGCAGCGGAGATGGAAAGGAG 60
Query 90 CCAATGGGAAATCCGACGAAAACCACTACGGCGATGCTAGAGAAAGGAACGGCTATGATG 149
||||||||| |||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 61 CCAATGGGAGATCCGACGAAGACCACTACGGCGATGCTCGATAAAGGAACGGCTATGATG 120
Query 150 CAATCGATGAAACCGATCAGGCAAATGAGCCTCCACGTGTGTTCATTCGCTTGCTATAGC 209
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 121 CAATCGATGAAACCGATCAGGCAAATGAGCCTTCACGTGTGTTCATTTGCTTGCTATAGC 180
Query 210 CATGATCCCGGTCGTCAGATCGAAGTTCATATTTACGGCCACCGTGTAAACCAGGATTTC 269
|| ||||| || |||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 181 CACGATCCTGGCCGTCAGATCGAAGTTCATATCTACGGCCAACGTGTAAACCAGGACTTC 240
Query 270 CTCCAATGTGCTGTCTACGATTCCAATTCCTCTAAGGCTCATCTCATAGGGATCGAATAT 329
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CTCCAATGTGCTGTCTACGATTCCAATTCCTCTAAGGCTCATCTCATAGGGATAGAATAT 300
Query 330 ATAGTGTCGGAAAAGTTATTCGAAAGTCTCTCACCGGAGGAACAAAAGCTTTGGCACTCG 389
|| |||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 301 ATTGTGTCGGAGAAGTTATTCGAGAGTCTCCCACCGGAGGAACAAAAGCTTTGGCACTCG 360
Query 390 CATGATTACGAG 401
||||||||||||
Sbjct 361 CATGATTACGAG 372
Score = 575 bits (311), Expect = 2e-163
Identities = 349/368 (95%), Gaps = 0/368 (0%)
Strand=Plus/Plus
Query 402 ATCCAAATGGCTCTTCTAGTAACTCCAAGGGTCCCTGAGCTCGTTGCGAAACCGGAGCTT 461
||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||
Sbjct 403 ATCCAAATGGCTCTTCTAGTAACTCCAAGGGTCCCGGAGCTCGTTGCCAAGCCCGAGCTT 462
Query 462 AAAAATCTTGCCAAATCTTACGGGAAATTTTGGTGTACATGGCAGATTGACCGAGGGGAT 521
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 463 AAAAATCTTGCCAAATCTTACGGAAAATTTTGGTGTACATGGCAGATAGACCGAGGGGAT 522
Query 522 AAATTACCACTAGGTGTACCATCACTAATGGTATCGCCACAAGACGTGAATCTCGGGAGA 581
| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 523 AGATTGCCACTAGGTGTACCATCACTAATGGTGTCGCCACAAGACGTGAATCTAGGGAGA 582
Query 582 ATCAAACCGGAGTTGGTGAAAAAGAGAGATGAAGAACATGGAATCTCGACTGAATCGTTG 641
|| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 583 ATAAAACCGGAGCTGGTGAAAAAGAGAGATGAAGAACATGGAATCTCGACGGAATCATTG 642
Query 642 AAGCCGTCAAGAGATGGGATCTGTGGACCAGAGAAGAAGAACCTGGTTGCTGATTATTGG 701
||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||
Sbjct 643 AAGCCGTCAAGAGATGGGATCAGTGGACCGGAGAAGAAGAATCTGGTCGCTGATTATTGG 702
Query 702 GTTAGGTTTAGGAAAGGCTTTGCGCTTGATGTTGTTGAAACAGATATGAAGAGAACAGCT 761
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 703 GTTAGGTTTAGGAAAGGCTTTGCGCTTGATGTTGTTGAGACAGATATGAAGAGAACAGCT 762
Query 762 CCCTTCCC 769
||||||||
Sbjct 763 CCCTTCCC 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33319429458
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5