BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18930.1
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492967 jgi|Araly1|492967|fgenesh2_kg.7__2400__AT4G18930.1 948 0.0
> Ahg492967 jgi|Araly1|492967|fgenesh2_kg.7__2400__AT4G18930.1
Length=649
Score = 948 bits (513), Expect = 0.0
Identities = 605/650 (93%), Gaps = 3/650 (0%)
Strand=Plus/Plus
Query 88 CGATCCATGGAAGAGGTGAAGAAGGATGTATACTCGGTTTGGGCATTACCAGATGAGGAA 147
||||||||||| |||||||||||||| |||||||| || ||||||||||| |||||||||
Sbjct 1 CGATCCATGGAGGAGGTGAAGAAGGACGTATACTCCGTGTGGGCATTACCGGATGAGGAA 60
Query 148 TCGGAGCCCCGATTCAAAAAGCTAATGGAAGCTTTGAGATCCGAATTCACTGGCCCAAGA 207
|||||||| || |||| |||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 61 TCGGAGCCGCGGTTCAGAAAGCTAATGGAAGCTCTGAGATCTGAATTCACTGGCCCAAGA 120
Query 208 TTCGTTCCTCACGTCACCGTCGCCGTATCTGCTTATCTGACGGCAGACGAAGCCAAGAAG 267
|||| ||||||||||||||||| | | | || |||||||||| |||||||||||||||
Sbjct 121 TTCGATCCTCACGTCACCGTCGTTGGAGCCACTAATCTGACGGCCGACGAAGCCAAGAAG 180
Query 268 ATGTTCGAATCAGCTTGCGACGGTCTTAAAG-CTTACACCGCCACCGTTGATCGCGTCTC 326
|||||||||||||||||||||||| || ||| ||||||| |||||||| |||||||||||
Sbjct 181 ATGTTCGAATCAGCTTGCGACGGT-TTTAAGTCTTACACTGCCACCGTCGATCGCGTCTC 239
Query 327 CACCGGAACTTTCTTCTTTCAATGCGTTTTCTTGCTTCTCCAAACCACCCCTGAGGTAAT 386
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 CACGGGAACTTTCTTCTTTCAATGCGTTTTCTTGCTTCTCCAATCCACCCCTGAGGTAAT 299
Query 387 GGAAGCTGGTGAACACTGTAAGAACCATTTCAATTGTTCCACTACCACACCTTACATGCC 446
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 GAAAGCTGGTGAACACTGTAAGAACCATTTCAATTGTTCAACTACCACACCTTACATGCC 359
Query 447 GCATTTGAGCCTGCTTTACGCTGAGTTGACAGAGGAAGAGAAGAAGAATGCGCAGGAGAA 506
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 360 GCATTTGAGCCTGCTTTACGCTGAGTTAACAGAGGAAGAGAAGAAGAAAGCGCAGGAGAA 419
Query 507 AGCTTACACGCTCGATAGCAGCCTCGATGGACTCAGTTTCCGGTTAAACCGACTTGCTCT 566
|||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||||
Sbjct 420 AGCTTACACGCTCGATAGCAGCCTCGATGGCCTCAGTTTCCGGTTAAAACAACTCGCTCT 479
Query 567 ATGCAAAACCGATACCGAGGACAAGACTCTAGAGACATGGGAGACAGTGGCTGTATGCAA 626
|||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||||
Sbjct 480 ATGCAAAACCGATACCGAAGACAAGACTCTAGAGTCCTGGGAGACGGTGGCTGTATGCAA 539
Query 627 TCTCAATCCTTAAGAAAGTCAA-AACTTTGGTTCTGAATCTGTAACAAAAGATCATAATG 685
||||||||||||||| || ||| || ||||||||||||||||||||||||||||||||||
Sbjct 540 TCTCAATCCTTAAGAGAGACAACAAGTTTGGTTCTGAATCTGTAACAAAAGATCATAATG 599
Query 686 AACTTGCTTTTGAATAATGTATCGTTTTCTCTAAAACTGAATAATAATGT 735
||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 600 AACTTGCTTTTGAATAATGTATCGTTTTCCCTAAGATTGAATAATAATGT 649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29507137758
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5