BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18950.1
Length=1962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492966 jgi|Araly1|492966|fgenesh2_kg.7__2399__AT4G18950.1 2880 0.0
> Ahg492966 jgi|Araly1|492966|fgenesh2_kg.7__2399__AT4G18950.1
Length=1783
Score = 2880 bits (1559), Expect = 0.0
Identities = 1713/1788 (96%), Gaps = 8/1788 (0%)
Strand=Plus/Plus
Query 1 TCCTTTTCCTCTCCGATGACTTTCTTACCGACCAGCTTAGTCTTCTCCATTACGGCATCA 60
|||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1 TCCTTTTCGTCTCCGATGACTTTGTTACCGACCTGCTTAGTCTTCTCCATTACGGCATCA 60
Query 61 TTCACCTATAAATTTCGCCGCTGGG-TTTAATTCTC-TATTCATTCAGAACCAAAAAAGA 118
||||||||||||||||| | ||||| |||||||| | | ||| | | ||| |||||| |
Sbjct 61 TTCACCTATAAATTTCGACACTGGGTTTTAATTCACATCTTC-TCCGGAA-AAAAAAAAA 118
Query 119 AGAAACC-TTTTTGATTCTCTTTGCGATTTCTTTGTTCAATCTCTTCTCAGATTGTGTGA 177
| ||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 119 AAAAACCTTTTTTGATTCT-TTTTCGATTTCTTTGTTCAATTTCTTCTCAGATTGTGTGA 177
Query 178 ATCGGGTTTAAATCGGGGTTTTAGGGTCTCTGTTTTCAAAAGGGTACCAAAAAGTTTGGA 237
||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 178 ATCGGGTTT-AATCAAGGTTTTAGGGTCTGTGTTTTCAAAAGGGTACCAAAAAGTTTGAA 236
Query 238 GCTTTACTGTAGAAAGATTTGATTTTTCGTTGACCCACTCCGAGATTTTCGGATACAAAT 297
||||| || | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GCTTTTCTATTGAAATTTTTGATTTTTCGTTGACCCACTCCGAGATTTTCGGATACAAAT 296
Query 298 CAGGGTTTTAGGGTTTTTGTTGGAATGGAAGAGGATTATCAACAGCCGAGGTTTACGATT 357
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 297 CAGGGTTTTAGGGTTTTTGTTGGAATGGAAGAGGATTATCTACCGCCGAGGTTTACGATT 356
Query 358 GGTAGGCAATCATCAATGGCGCCGGAGAAGATTCCGGAGCCGTCGGTTCACTCAGAAGAA 417
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 357 GGTAGGCAATCGTCAATGGCGCCGGAGAAGATTCCGGAGCCGTCGATTCACTCGGAAGAA 416
Query 418 GAGGTGTTTGAGGATGGAGAAGAGATCGATGGTGGTGTGAGACTAATGTATTTGGCTAAT 477
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 417 GAGGTGTTTGAGGATGGAGAAGAGATCGATGGTGGTGTGAGACTTATGTATTTGGCTAAT 476
Query 478 GAAGGTGACATTGAAGGGATTAAGGAGCTTATTGATTCAGGGATTGATGCTAATTACAGA 537
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 477 GAAGGTGACATTGAAGGGATTAAGGAGCTTCTTGATTCAGGGATTGATGCTAATTACAGA 536
Query 538 GACATTGATGATCGGACTGCTTTACACGTGGCGGCTTGTCAAGGATTGAAAGATGTTGTT 597
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 537 GACATTGATGATCGGACTGCTCTACACGTGGCGGCTTGTCAAGGATTGAAAGATGTTGTT 596
Query 598 GAGCTTCTTCTTGATCGGAAAGCTGAGGTTGATCCTAAAGATCGTTGGGGAAGCACTCCA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GAGCTTCTTCTTGATCGGAAAGCTGAGGTTGATCCTAAAGATCGTTGGGGAAGCACTCCA 656
Query 658 TTTGCAGATGCGATATTTTACAAGAACATTGATGTTATCAAGATTCTTGAGATACATGGA 717
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 657 TTTGCAGATGCGATATTTTACAAGAACATTGATGTAATCAAGATTCTTGAGCTACATGGT 716
Query 718 GCTAAACATCCGATGGCTCCAATGCACGTTAAGACTGCTCGTGAAGTCCCTGAGTATGAA 777
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 717 GCTAAACATCCGATGGCTCCAATGCATGTCAAGACTGCTCGTGAAGTCCCTGAATATGAA 776
Query 778 ATAAATCCTAGTGAGCTTGATTTCACTCAAAGCAAAGAGATAACAAAGGGAACTTACTGT 837
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 777 ATCGGTCCTAGTGAGCTTGATTTCACTCAAAGCAAAGAGATATCAAAGGGAACTTACTGT 836
Query 838 ATGGCAATGTGGCGTGGTATTCAAGTTGCGGTGAAAAAGCTGGATGATGAAGTTTTGAGC 897
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 837 ATGGCAATGTGGCGTGGTATTCAAGTTGCGGTGAAAAAGCTCGATGATGAAGTTTTGAGC 896
Query 898 GATGACGATCAAGTGAGGAAGTTCCATGATGAGCTTGCATTGCTCCAAAGGCTTAGGCAT 957
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 897 GATGACGATCAAGTGAGGAAATTCCACGATGAGCTTGCATTGCTCCAAAGGCTCAGGCAT 956
Query 958 CCAAACATTGTGCAGTTTCTTGGTGCTGTAACCCAAAGTAACCCAATGATGATTGTGACT 1017
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 957 CCAAACATTGTGCAGTTTCTTGGTGCTGTAACTCAAAGTAATCCAATGATGATTGTGACT 1016
Query 1018 GAATATTTGCCCAGGGGGGATTTGCGTGAATTGCTCAAACGAAAAGGACAATTGAAACCA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GAATATTTGCCCAGGGGGGATTTGCGTGAATTGCTCAAACGAAAAGGACAATTGAAACCA 1076
Query 1078 GCTACTGCTGTTAGATATGCCCTTGATATTGCTAGGGGAATGAGCTATCTTCATGAGATC 1137
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1077 GCTACTGCTGTTAGATATGCCCTTGATATTGCAAGGGGAATGAGCTATCTTCATGAGATC 1136
Query 1138 AAAGGAGACCCTATAATCCACCGCGATCTTGAACCTTCAAACATTCTGCGGGATGATTCA 1197
|||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1137 AAAGGAGACCCTATTATCCACCGCGACCTTGAACCTTCAAACATTTTGCGGGATGATTCA 1196
Query 1198 GGGCATCTGAAAGTTGCAGACTTTGGAGTAAGCAAGCTTGTTACTGTTAAAGAAGACAAG 1257
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1197 GGGCATCTGAAAGTTGCAGACTTTGGAGTAAGCAAGCTCGTAACTGTTAAAGAAGACAAG 1256
Query 1258 CCTTTTACATGTCAAGACATTTCTTGTCGATATATAGCTCCCGAGGTTTTCACTAGTGAA 1317
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CCTTTCACATGTCAAGACATTTCTTGTCGATATATAGCTCCCGAGGTTTTCACTAGTGAA 1316
Query 1318 GAATACGATACAAAAGCTGATGTTTTCTCATTTGCATTGATCGTTCAGGAGATGATCGAA 1377
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1317 GAGTACGATACAAAAGCTGATGTTTTCTCATTTGCATTAATCGTTCAAGAGATGATCGAA 1376
Query 1378 GGCCGAATGCCGTTTGCTGAAAAGGAAGACAGTGAAGCTTCTGAAGCTTATGCTGGCAAA 1437
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GGCCGAATGCCCTTTTCTGAAAAGGAAGACAGTGAAGCTTCTGAAGCTTATGCTGGCAAA 1436
Query 1438 CATCGGCCATTATTCAAAGCTCCATCAAAGAATTACCCACATGGTCTTAAAACGTTGATA 1497
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1437 CATCGGCCATTATTTAAAGCTCCATCAAAGCATTACCCACATGGTCTTAAAACGTTGATA 1496
Query 1498 GAAGAATGCTGGCATGAGAAACCTGCAAAGCGACCAACTTTCAGAGAGATCATTAAACGA 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 GAAGAATGCTGGCATGAGAAACCTGCAAAGCGACCAACTTTCAGAGAGATCATTAAACGA 1556
Query 1558 CTTGAGTCCATTCTTCACCACATGGGTCACAAGCGACAATGGAGGATGAGGCCATTGACA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CTTGAGTCCATTCTTCACCACATGGGTCACAAGCGACAATGGAGGATGAGGCCATTGACA 1616
Query 1618 TGCTTTCAGAATTTCGAGCACAAGAAGAAACATAATTGGGATTTGAGCAGCCATGACGGC 1677
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1617 TGCTTTCAGAATTTCGAGCACAAGAAGAAACAGAACTGGGATTTGAGCAGCCATGACGGC 1676
Query 1678 TCATCATCCGGTTCACATTTGTGATTCTTTAAACGGTTAAAGAAACCATTCTTTTGTATC 1737
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1677 TCATCATCCGGTTCACATTTGTGATTCTTTACCCGGTTAA-GAAACCATTCTTTTGTATT 1735
Query 1738 CATTCCTTCCGGTTTAGTTTGGGTTTCCCCAAAGCAACCGAATTTGAC 1785
|||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1736 CATTCCTTCCGGTTTAGTTTGGTTTTCCCCAAAGCAACCGAATTTGAC 1783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73742714320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5