BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18970.2
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492964 jgi|Araly1|492964|fgenesh2_kg.7__2397__AT4G18970.1 2017 0.0
Ahg494417 jgi|Araly1|494417|fgenesh2_kg.8__233__AT5G45670.1 918 0.0
> Ahg492964 jgi|Araly1|492964|fgenesh2_kg.7__2397__AT4G18970.1
Length=1397
Score = 2017 bits (1092), Expect = 0.0
Identities = 1163/1198 (97%), Gaps = 1/1198 (0%)
Strand=Plus/Plus
Query 75 ATATTCTTCTGACCTTTATTATATACATCCATTTACATTCTTCACGTTATCAGACCAAtc 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATATTCTTCTGACCTTTATTATATACATCCATTTACATTCTTCACGTTATCAGACCAATC 60
Query 135 tctctcttcttcttcttcacgttctctctctttcCGGATAAGGGTAGAGATGGCTAGAGT 194
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TCTCTCTTCTTCTTCTTCACGTTCTCTCTCTTTTCGGATAAGGGTAGAGATGGCTAGAGT 120
Query 195 TTGTGTAATGATGATGGCTATGGCTATAGCTATGGCTATGAACATAGCTATGGGTGATCC 254
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 121 TTGTGTAATGATGATGGCTATGGCTATGGCTATGGCTATGAACATTGCTATGGGTGACCC 180
Query 255 AATAGCACCATGTTACTTCATATTCGGTGACTCTTTGGTTGATAGTGGAAACAACAATCG 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATAGCACCATGTTACTTCATATTCGGTGACTCTTTGGTTGATAGTGGAAACAACAATCG 240
Query 315 GCTTACCTCTCTAGCAAGAGCTAATTACTTCCCTTACGGTATCGACTTCCAGTACGGTCC 374
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 GCTTACCTCTTTAGCAAGAGCTAATTACTTCCCTTACGGTATCGACTTCCAGTTCGGTCC 300
Query 375 AACCGGTCGCTTCTCCAACGGAAAAACCACCGTCGATGTCATCACTGAGCTTCTTGGTTT 434
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 AACCGGCCGGTTCTCCAACGGAAAAACCACCGTCGATGTCATCACCGAGCTTCTTGGTTT 360
Query 435 CGATGACTACATTACACCGTATTCCGAAGCAAGGGGAGAAGATATCCTAAGAGGAGTAAA 494
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 CGATGACTACATTACACCGTATTCCGAAGCAAGGGGAGAAGATATCCTGAGAGGAGTAAA 420
Query 495 CTACGCTTCTGCAGCTGCCGGAATCCGAGAAGAAACTGGTCGACAATTGGGAGCTAGAAT 554
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 421 CTACGCTTCTGCAGCTGCCGGAATACGAGAAGAAACTGGCCGTCAATTGGGAGCTAGAAT 480
Query 555 AACATTTGCAGGGCAAGTAGCTAATCATGTAAACACTGTGTCACAAGTTGTGAACATACT 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AACATTTGCAGGGCAAGTAGCTAATCATGTAAACACTGTGTCACAAGTTGTGAACATACT 540
Query 615 CGGAGACGAGAATGAAGCTGCTAATTACCTAAGTAAATGCATCTACTCAATCGGGTTAGG 674
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 TGGAGACGAGAATGAAGCTGCTAATTACCTAAGCAAATGCATCTACTCAATCGGGTTAGG 600
Query 675 CAGTAACGACTATCTCAATAACTATTTTATGCCTGTTTATTACTCCACCGGGAGCCAGTA 734
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 CAGTAACGACTATCTCAATAACTATTTTATGCCTGTTTATTACTCCACTGGGAGCCAGTA 660
Query 735 CTCCCCGGATGCCTACGCCAACGACCTCATAAACCGCTACACCGAGCAACTCCGGATAAT 794
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTCCCCGGATTCCTATGCCAACGACCTCATAAACCGCTACACCGAGCAACTCCGGATAAT 720
Query 795 GTATAACAACGGAGCGAGGAAGTTTGCGCTAGTTGGTATAGGTGCAATAGGATGCAGTCC 854
|||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||||
Sbjct 721 GTATAACAACGGAGCGAGGAAGTTTGCGTTAGTTGGTATTGGCGCAATTGGATGCAGTCC 780
Query 855 AAATGAGCTGGCTCAAAACAGCAGAGACGGGGTGACTTGTGACGAAAGGATCAATTCCGC 914
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 781 AAATGAGCTGGCTCAAAACAGTAGAGACGGGGTAACTTGTGACGAAAGGATCAATTCCGC 840
Query 915 TAACAGAATCTTCAACAGTAAGCTTGTGTCTCTGGTTGATCACTTCAACCAAAACACACC 974
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 841 AAACAGAATCTTCAACAGTAAGCTTGTGTCTCTGGTTGATCATTTCAATCAAAACACACC 900
Query 975 AGGGGCCAAGTTCACTTACATTAATGCTTATGGTATCTTCCAAGACATGGTAGCTAATCC 1034
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGGCGCCAAGTTCACTTACATTAATGCTTATGGTATCTTCCAAGACATGGTAGCTAATCC 960
Query 1035 TTCTCGCTATGGGTTTAGGGTGACAAACGCGGGATGTTGTGGAGTTGGGAGGAACAATGG 1094
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTCTCGCTATGGGTTTAGGGTTACAAACGCGGGATGTTGTGGAGTTGGGAGGAACAATGG 1020
Query 1095 ACAGATAACTTGTCTTCCGGGTCAAGCTCCATGTCTTAACAGGGACGAGTATGTGTTCTG 1154
||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1021 ACAGATAACTTGTCTCCCGGGTCAAGCTCCATGTCTGAACAGGGACGAGTTTGTGTTCTG 1080
Query 1155 GGACGCGTTTCATCCAGGAGAAGCTGCGAATGTTGTCATCGGTAGTCGATCTTTTCAGAG 1214
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1081 GGACGCGTTTCATCCAGGAGAAGCCGCGAATGTTGTCATCGGTAGTCGATCTTTTCAGAG 1140
Query 1215 AGAATCTGCTTCTGATGCTCATCCTTATGATATCCAGCAGCTTGCTCGGCTCTA-TTG 1271
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1141 AGAATCTGCTTCTGATGCTCATCCTTATGATATCCAGCAGCTTGCTCTGCTCTAGTTG 1198
> Ahg494417 jgi|Araly1|494417|fgenesh2_kg.8__233__AT5G45670.1
Length=1343
Score = 918 bits (497), Expect = 0.0
Identities = 899/1091 (82%), Gaps = 35/1091 (3%)
Strand=Plus/Plus
Query 182 AGATGGCTAGAGTTTGTGTAATGATGATGGCTATGGCTATAGCTATGGCTATGAACATAG 241
||||||| ||| | ||| ||||||| ||| ||||| | | |||||| | |||||||| |
Sbjct 106 AGATGGCGAGAATGTGTTTAATGATAATGATTATGG-T-T-GCTATGACCATGAACATTG 162
Query 242 CTATGGGTGATCCAATAGCACCATGTTACTTCATATTCGGTGACTCTTTGGTTGATAGTG 301
||| | ||||||| || ||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct 163 CTAAGAGTGATCCCATTGCACCCTGTTACTTCATATTTGGTGACTCTTTGGTTGATAATG 222
Query 302 GAAACAACAATCGGCTTAC-CTC-TCTAGCAAGAGCTAATTACTTCCCTTACGGTATCGA 359
| || ||||||| |||| | || | |||| |||||||||||||| ||||| ||||| ||
Sbjct 223 GCAATAACAATCAGCTT-CAGTCAT-TAGCTAGAGCTAATTACTTTCCTTATGGTATTGA 280
Query 360 -CTTCCAGTACGGTCCAACCGGTCGCTTCT-CCAACGGAAAAACCACCGTCGATGTCATC 417
|| | | ||||||||||||||| || | |||||| | ||||||||| ||||| |||
Sbjct 281 TTTTGCTG-CCGGTCCAACCGGTCGGTT-TAGCAACGGCAGAACCACCGTTGATGTTATC 338
Query 418 ACTGAGCTTCTT-GGTTTCGATGACTACATTACACCGTATTCCGAAGCAAGGGGAGAAGA 476
|||||||| || || ||||| ||||||||||||||||| || || || ||| ||||
Sbjct 339 GCTGAGCTT-TTGGGGTTCGACGACTACATTACACCGTACGCCTCTGCTAGAGGACAAGA 397
Query 477 TATCCTAAGAGGAGTAAACTACGCTTCTGCAGCTGCCGGAATCCGAGAAGAAACTGGTC- 535
|| || ||||||| ||||| ||||| || ||||||||||||||||| ||||| || |
Sbjct 398 CATTCTCCGAGGAGTTAACTATGCTTCCGCTGCTGCCGGAATCCGAGATGAAACCGG-CA 456
Query 536 GACAATTGGGAGCTAGAATAACATTTGCAGGGCAAGTAGCTAATCATGTAAACACTGTGT 595
|||||||||||| ||||||| |||||||||| |||||||||||||| || ||||||||||
Sbjct 457 GACAATTGGGAGGTAGAATAGCATTTGCAGGACAAGTAGCTAATCACGTGAACACTGTGT 516
Query 596 CACAAGTTGTGAACATACTCGGAGA-CGAGAATGAAG-CTGCTAATTACCTAAGTAAATG 653
||||||| ||||||||||| || || | | || |||| || | |||||||| || |||||
Sbjct 517 CACAAGTAGTGAACATACTTGGTGATC-AAAACGAAGCCT-CGAATTACCTCAGCAAATG 574
Query 654 CATCTACTCAATCGGGTTAGGCAGTAACGACTATCTCAATAACTATTTTATG-CCTGTTT 712
||| ||||| ||||| |||||||||||||| |||||||| ||||| || ||| || |||
Sbjct 575 CATTTACTCTATCGGATTAGGCAGTAACGATTATCTCAACAACTACTTCATGCCCACTTT 634
Query 713 ATTACTCCACCGGGAGCCAGTACT-CCCCGGATGCCTACGCCAACGACCTCATAAAC-CG 770
|||||| ||||| | ||||| || ||||| || |||| ||| |||| ||| | || ||
Sbjct 635 -TTACTCTACCGGTAACCAGTTCTCCCCCGAAT-CCTATGCCGACGATCTCGT-TACTCG 691
Query 771 CTACACCGAGCAACTCCGGATAATGTATAACAACGGAGCGAGGAAGTTTGCGCTAG-TTG 829
||||||||||||||| ||||| |||||| ||| |||||||||||||||||| | | | |
Sbjct 692 TTACACCGAGCAACTCAGGATATTGTATACCAATGGAGCGAGGAAGTTTGCG-TTGATAG 750
Query 830 GTA-TAGGTGCAATAGGATGCAGTCCAAATGAGCTGGCTCAAAACAGCAGAGACGGGGTG 888
| | | || ||||| || ||||| || |||||||| || || ||||||||||| || |
Sbjct 751 G-AGTCGGGGCAATCGGTTGCAGCCCGAATGAGCTAGCACAGAACAGCAGAGA-TGGAAG 808
Query 889 -ACTTGTGACGAAAGGATCAATTCCGCTAACAGAATCTTCAACAGTAAGCTTGTGTCTCT 947
|| ||||||||||| ||||| || || ||||||||||||||||| || ||| | ||| |
Sbjct 809 AACGTGTGACGAAAGAATCAACTCAGCAAACAGAATCTTCAACAGCAAACTTATATCTAT 868
Query 948 GGTTGATCAC-TTCAACCAAAACACACCAGGGGCCAAGTTCACTTACATTAATGCTTATG 1006
|||||| | | || ||||| |||||||||| || || ||||||||||| || || ||||
Sbjct 869 GGTTGA-CGCTTTTAACCAGAACACACCAGACGCAAAATTCACTTACATCAACGCCTATG 927
Query 1007 GTATCTTCCAAGACA-TGGTAGCTAATCCTTCTCGCTATGGGTTTAGGGTGACAAACGCG 1065
| ||||||||||||| || || | || ||| | || || |||||||| |||||||| ||
Sbjct 928 GGATCTTCCAAGACATTGTTA-CAAACCCTGCGCGATACGGGTTTAGTGTGACAAATGCA 986
Query 1066 GGATGTTGTGGAGTTGGGAGGAACAATGGACAGATAACTTGTCTTCCGGGTCAAGCTCCA 1125
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 987 GGATGTTGTGGAGTTGGGAGGAATAATGGACAGATAACTTGTCTTCCAGGTCAAGCACCA 1046
Query 1126 TGTCTTAACAGGGACGAGTATGTGTTCTGGGACGCGTTTCATCCAGGAGAAGCTGCGAAT 1185
||||| || ||| | ||||||||||| ||||| ||||||||||| || ||||||||||||
Sbjct 1047 TGTCTAAATAGGAATGAGTATGTGTTTTGGGATGCGTTTCATCCCGGTGAAGCTGCGAAT 1106
Query 1186 GTTGTCATCGGTAGTCGATCTTTTCAGAGAGAATCTGCTTCTGATGCTCATCCTTATGAT 1245
|||| ||||| || ||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1107 ATTGTTATCGGAAGACGATCTTTTAAGCGAGAAGCTGCTTCTGATGCTCATCCTTATGAT 1166
Query 1246 ATCCAGCAGCT 1256
|| ||||||||
Sbjct 1167 ATTCAGCAGCT 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58773248035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5