BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18975.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946285 jgi|Araly1|946285|scaffold_702514.1 1240 0.0
> Ahg946285 jgi|Araly1|946285|scaffold_702514.1
Length=895
Score = 1240 bits (671), Expect = 0.0
Identities = 830/905 (92%), Gaps = 17/905 (2%)
Strand=Plus/Plus
Query 19 TACTGGAAGTGAAAGTAATGGCGCTCTGTAACTTGAATCCAACTCAAGGGA-TATTCCCA 77
|||||||||||| ||||||||||||||||||||| |||||||||| | | |||| |
Sbjct 4 TACTGGAAGTGACAGTAATGGCGCTCTGTAACTTCAATCCAACTC-TCGTAGGATTCACG 62
Query 78 TTGCAAGGCTTATCAAAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGT 137
|| ||||| ||||||||| ||||||||||| ||||||||| |||||| ||| |||| ||
Sbjct 63 TTTCAAGGATTATCAAAACCTCAAGAATTTGGATGCTTTTCGTTGCTTGAATATCCAAGT 122
Query 138 TGCGGAAGTTACTCCTCGTTGAAGACGAAAAGGTTTGGCTTTTGCATCAGATCAAAGTTC 197
|| |||||||||||| |||||||||| |||||||||| ||||||||||| ||||||||
Sbjct 123 TGTGGAAGTTACTCCAAGTTGAAGACGGAAAGGTTTGGTTTTTGCATCAGGGCAAAGTTC 182
Query 198 TCAGAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAGCAAGGAA 257
||||||||| |||| |||||||| || |||| |||||||||||||||||||||
Sbjct 183 TCAGAGAAGCAAGCCGGGAAATT-------GG--ATGTAGCCACTGTGAACAGCAAGGAA 233
Query 258 ATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAATGACTCTGCTGGGTCT 317
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 234 ATAAAGAAAGTGGGGAAGAAAGAGCATCACTTATGGAAGAAGAATGACTCTGCTGGGTCT 293
Query 318 GGACAGAAAGCACTTAATCTT-GTTCGAATGCTCTCTGGACTCCCAAATGAAAAAGAGGC 376
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 294 GGACAGAAAGCACTTAAT-TTAGTCCGAATGCTCTCTGGACTCCCAAATGAAAAAGAGGC 352
Query 377 TGTTTATGGAGCTTTGAATAAATGGGTAGCTTGGGAGGTTGAATTTCCCATTATTGCTGC 436
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TGTTTATGGAGCTTTAAACAAATGGGTAGCTTGGGAGGTTGAATTTCCCATTATTGCTGC 412
Query 437 AGCTAAGGCGTTGCAAATCTTAAGAAAGAGAAGTCAGTGGCATCGTGTGATTCAATTGGC 496
||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 413 AGCTAAGGCTTTGCAAATCTTAAGAAAGAGAAGCCAGTGGCATCGTCTGATTCAATTGGC 472
Query 497 TAAGTGGATGTTAAGCAAAGGGCAAGGTGCTACAATGGGAACATACGATATCCTCTTATT 556
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 473 TAAGTGGATGTTAAGCAAAGGGCAAGGTGCTACAATGGGAACATATGATACCCTCTTATT 532
Query 557 GGCATTTGATATGGACGAAAGGGCTGATGAGGCAGAGTCCTTATGGAACATGATTCTGCA 616
|||||||||||||||| |||| ||||| |||||||| || ||||||||||||||||||||
Sbjct 533 GGCATTTGATATGGACCAAAGAGCTGACGAGGCAGAATCGTTATGGAACATGATTCTGCA 592
Query 617 CACACATACACGATCCATCCCAAGACGCTTGTTCGCTAGGATGATAGCGTTGTATGCTCA 676
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 593 CACACATACACGATCCATCCCAAGACGCTTGTTCGCTAGGATGATAGCTTTGTATGCTCA 652
Query 677 CCATGACCTTCACGATAAGGTTATCGAGGTCTTTGCAGACATGGAAGAGCTGAAGGTGAG 736
| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 653 CTATGACCTTCACGATAAGGTTATCGAGGTGTTTGCAGACATGGAGGAGCTGAAGGTGAG 712
Query 737 CCCAGACGAAGACT-CTGCGAGGAGAGTGGCACGAGCCTTCAGGGAACTCAACCAAGAAG 795
||||| ||||| | |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 713 GCCAGATGAAGA-TACTGCGAGGAGAGTGGCTCGAGCCTTCAGGGAACTCGGCCAAGAAG 771
Query 796 AAAATCGAAAACTGATCCTTAGAAGGTACCTCTCTGAATACAAATACATCTACTTCAATG 855
||||| | |||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 772 AAAATAGGAAACTGATCCTTAGGAGGTACCTCTCTGAATTCAAATACATCTACTTCAATG 831
Query 856 GTGAGCGGGTTAGAGTCAAAAGATATTTCTCTGAAGATAGTTGATTTCATTCTT-ATGAa 914
|||| ||||||||||||||||||||| ||||||||||||||||||||||| || || ||
Sbjct 832 GTGAAAGGGTTAGAGTCAAAAGATATTCCTCTGAAGATAGTTGATTTCATT-TTCATTAA 890
Query 915 cacac 919
|||||
Sbjct 891 CACAC 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5