BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18980.1
Length=595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492961 jgi|Araly1|492961|fgenesh2_kg.7__2394__AT4G18980.1 774 0.0
> Ahg492961 jgi|Araly1|492961|fgenesh2_kg.7__2394__AT4G18980.1
Length=559
Score = 774 bits (419), Expect = 0.0
Identities = 524/570 (92%), Gaps = 25/570 (4%)
Strand=Plus/Plus
Query 16 TTTTTCCTTACTTTCTAGGCAAAAACTTTACGATCTTTCAATGTCAGAAGAATTTCAAGA 75
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCCCTTACTTTCTTGGCAAAAACTTTACGATCTTTCAATGTCAGAAGAATTTCAAGA 60
Query 76 ATCTGAGGTTATATTTTCCGATGAGTCTTTCACAAGGAAAGATAACAAGATCAGTCACAA 135
||| |||||||| ||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 61 ATCCGAGGTTATTTTTTCCGATGAGTCTTTCACAAGGAAACATAACAAG---AGTCACAA 117
Query 136 CAACGAAAACTACGAAAGAAAGTCGACGGAGAAGGATAAAAT-TTCATCTCCGGTGAGAA 194
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 118 CAACGAAAACTACGAAAGAAAGTCGACGGAGAAGGAT-AAATATTCATCTCCGGTGAGAA 176
Query 195 TTCCGTCAAGAACTACTATCCGGTATAC-G--GA-----A-GAGGAGGGAGAAATGACAC 245
||||||||||||||| | |||||| ||| | || | |||||||||||||||||||
Sbjct 177 TTCCGTCAAGAACTATTTTCCGGTGTACGGAAGATGTGGAGGAGGAGGGAGAAATGACAC 236
Query 246 CGCCACATGTCATAATCGAAAAACGAAGAACGGAGGCGCAAATGGCGTTTTCTTTTTGTA 305
| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 237 CACCACATGTCATAATCGAGAAACGAAGAAAGGAGGCGCAAATGGCGTTTTCTTTTTGTA 296
Query 306 CCCTTAAAGGAAGAGACTTGAGTCGACACCGTAACACCGTTCTTAGGATGACCGGCTTTT 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 297 CCCTTAAAGGAAGAGACTTGAGTCGACACCGTAACACCGTTCTTAGGATGACCGGTTTTT 356
Query 366 TGGAAGTTTAATATTGATCCCAAAATAAAATGAGAACCGGTCAAGTTTAGTTTGATCTAT 425
|||||||||| | | |||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 357 TGGAAGTTTAGT-T-GATCCCAAAACAAAATGAGAACCGGTCAAGTTTAATTTGATCTAT 414
Query 426 TT-GAGTTCGGTTTACGTCGGT-TTTCTTCAAAATTTGGATGT--GATTTAGCTTTGAAA 481
|| | ||||||||||||||| | |||||||| ||||||||| |||||||||||||||
Sbjct 415 TTTG-GTTCGGTTTACGTCG-TCTTTCTTCA---TTTGGATGTAAGATTTAGCTTTGAAA 469
Query 482 CGAACCAATTAGTGTATCATGTTTTACACGTATAACATAGCGTTGAAACGAACCAATGTA 541
|||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 470 CGAACCAAGTAATGTATCATGTTTTACACGTATAACATGGCTTTGAAACGAACCAATGTA 529
Query 542 TCACGGTTCTTATTGTTTGGTGAAGAAAAA 571
||| |||||||||| |||||||||||||||
Sbjct 530 TCATGGTTCTTATTATTTGGTGAAGAAAAA 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21786841319
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5