BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G18990.1 Length=1105 Score E Sequences producing significant alignments: (Bits) Value Ahg890279 jgi|Araly1|890279|Al_scaffold_0007_2265 1712 0.0 > Ahg890279 jgi|Araly1|890279|Al_scaffold_0007_2265 Length=1074 Score = 1712 bits (927), Expect = 0.0 Identities = 1027/1076 (95%), Gaps = 4/1076 (0%) Strand=Plus/Plus Query 1 ATGAGAGATTCAATCTATCTTTTATGGATTGATAATCGATTAGTGGTAATAATTATGATG 60 |||||||||||||||||| |||| |||||| ||||||||||| | ||||||||||||||| Sbjct 1 ATGAGAGATTCAATCTATTTTTTCTGGATTAATAATCGATTAATAGTAATAATTATGATG 60 Query 61 GTGATGATGGTATCATGTAGATGCGTTTTGGGATTGGAGAACATAAATCCGATATTCTTC 120 |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 61 GTGATGATCATATCATGTAGATGTGTTTTAGGATTGGAGAACATAAATCCGATATTCTTC 120 Query 121 GATGAAGGTCTTTCTCATTTGTTTGGTGAAGGTAATCTCATCCGATCTCCTGATGATCGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GATGAAGGTCTTTCTCATTTGTTTGGTGAAGGTAATCTCATCCGATCTCCTGATGATCGT 180 Query 181 AGCGTTCGATTACTCCTCGACAAATACACTGGGTCCGGATTTATCTCTTCAAGCATGTAT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGCGTTCGATTACTCCTCGACAAATACACTGGGTCCGGATTTATCTCTTCAAGCATGTAT 240 Query 241 CAACATGGGTTTTTCAGTTCGTTGATAAAGTTGCCAGGAGCGTACACGGCTGGTATCGTC 300 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 241 CAACATGGGTTTTTTAGTTCGTTGATAAAGTTGCCAGGAGCTTACACGGCTGGTATCGTC 300 Query 301 GTCGCTTTCTATACATCAAATGGTGATGTGTTTGTGAAGGACCATGACGAACTAGACATA 360 ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 301 GTCGCCTTCTATACATCAAATGGCGATGTGTTTGTGAAGAACCATGACGAACTAGACATA 360 Query 361 GAGTTTTTAGGGAACCTAGAAGGAAAGCCTTGGCGATTTCAAACGAATATGTATGGAAAC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GAGTTTTTAGGGAACCTAGAAGGAAAGCCTTGGCGATTTCAAACGAATATGTATGGAAAC 420 Query 421 GGTAGCACAAACCGCGGCCGCGAAGAACGCTACCGTCTTTGGTTTGATCCTTCCAAGGAG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGTAGCACAAACCGCGGCCGCGAAGAACGCTACCGTCTTTGGTTTGATCCTTCCAAGGAG 480 Query 481 TTTCACCGTTATAGCATCCTTTGGACCCCTACCAAAATAATATTTTGGGTAGATGATGTA 540 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 481 TTTCACCGTTATAGCATCCTTTGGACCCCTACCAAAATTATATTTTGGGTAGATGATGTA 540 Query 541 CCAATAAGAGAAATCCTAAGAAAAGAGGAAATG-AATGGAGACTATCCACAAAAGCCAAT 599 ||||||||||||||| |||||||||| |||||| || ||||||||||| ||||| ||||| Sbjct 541 CCAATAAGAGAAATCATAAGAAAAGAAGAAATGGAA-GGAGACTATCCTCAAAAACCAAT 599 Query 600 GTCTCTCTATGCAACCATTTGGGACGCCTCAAGTTGGGCTACTTCCGGTGGAAAATTCGG 659 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 600 GTCTCTATATGCAACCATTTGGGACGCCTCAAGCTGGGCTACTTCCGGTGGAAAATTCGG 659 Query 660 CGTCGACTACACATTTTCACCTTTTGTTTCCGAATTCAAAGATATAGCCCTCGACGGTTG 719 |||||| || |||| |||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 660 CGTCGATTATACATATTCACCTTTTGTCTCCGAATTCAAAGATATAGCGCTCGACGGTTG 719 Query 720 TAATGTCTCTGACTCA-TTCCCCGGAGAAAACAACAACAACAACATCGGTAATTACAATA 778 |||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |||| Sbjct 720 TAATGTCTCTGACTCACTTCCA-GGAGAAATCAACAACAACAACATCGGTAATTATAATA 778 Query 779 ACATAAATTGTTCTGTCTCCGACCAATTTCTCATGAGCAATGACTACTCAACCATTAGTC 838 |||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 779 ACATCAATTGCTCTGTCTCCGACCAATTTCTCATGACCAACGACTACTCAACCATTAGTC 838 Query 839 CTAAACAAGCAACTGCTATGCGACGGTTCCGAGAACGTTATATGTATTATTCGTATTGTT 898 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 CTAAACAAGCAGCCGCTATGCGACGGTTCCGAGAACGTTATATGTATTATTCGTATTGTT 898 Query 899 ATGACACCATTCGATACTCGGTGCCTCCACCGGAGTGTGTTATTGTGACGGCTGAGAAGA 958 | |||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| Sbjct 899 ACGACACCATTCGATACTCGGTGCCTCCGCCAGAGTGTGTTATTGTGACGGCTGAAAAGA 958 Query 959 ACCGGTTTAGAGATACTGGACGGTTAAAGTTTGGTGGTAGTCATCCTAAAGTGCATAAAG 1018 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 ACCGGTTTAGGGATACTGGACGGTTAAAGTTTGGTGGTAGTCATCCTAAAGTGCATAAAG 1018 Query 1019 CACGTAAGAAACGGCGACGGAATCGGTCTACGCCGGTTGTATCGGCTGACCTATAG 1074 || | |||| |||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 1019 CAAGGAAGAGACGGCGACGGAATCGGTCCACGCCGGTTGTATCGGCTGATCTATAG 1074 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41172750360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5