BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19000.1 Length=1221 Score E Sequences producing significant alignments: (Bits) Value Ahg492959 jgi|Araly1|492959|fgenesh2_kg.7__2392__AT4G19000.1 1664 0.0 > Ahg492959 jgi|Araly1|492959|fgenesh2_kg.7__2392__AT4G19000.1 Length=1224 Score = 1664 bits (901), Expect = 0.0 Identities = 1132/1239 (91%), Gaps = 33/1239 (3%) Strand=Plus/Plus Query 1 ATGCAAGAGTTAGACT-CTTCTAACGATGAATGGGTGAAAGAACTT---GAAG-----GA 51 |||||||||||||| | |||||||||||| ||||||||||||||| |||| || Sbjct 1 ATGCAAGAGTTAGA-TGATTCTAACGATGACTGGGTGAAAGAACTTGAAGAAGTTCTCGA 59 Query 52 -GAGAACGAGGAATCGAAATTCACAGGGAGGAGATTAGTTAAAAAGTCGATTTCTGTTCC 110 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GGATAACGAGGAATCGAAATTCACAGGGAGGAGATTAGTTAAAAAGTCGATTTCTGTTCC 119 Query 111 TGAATTGGTAGACGAAGTTGAAGAAGATCTCGACGATTTTACAGAACCTGCGGATGATTT 170 |||||||||||| |||||||| |||||||| ||||||||| || |||| ||||||||| Sbjct 120 TGAATTGGTAGATGAAGTTGACGAAGATCTTAACGATTTTATGGAGCCTGAGGATGATTT 179 Query 171 TAATGACAAAGTAGGgaagaagagacagaggaagaagaaagatgagtctggtcttgagaa 230 |||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| Sbjct 180 TAATGACAAAGTAGGGAAGAAGAGACAGAGGAAGAA-A--GATGAGTCTGTTCTTGAGAA 236 Query 231 gacaaaaaagaacaagaagCAAAATTCCGAAGAGGTTCAAGAGATGTGGGATTCAATTAC 290 ||| || ||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 237 GACGAAGAAGAA---GAAGCAAAATTCCGCAGAGGTTCAAGAGATGTGGGATTCAATTAC 293 Query 291 GAACAACA-CTAACTCACAGTATGGTGATAAGGTCGTAGTAAAACCTCCTAAGAAAAAAG 349 |||| ||| | ||||| ||| |||||||||| ||||||||||||| |||||||||||||| Sbjct 294 GAACGACAAC-AACTCCCAGGATGGTGATAAAGTCGTAGTAAAACGTCCTAAGAAAAAAG 352 Query 350 ATGAAGATGCTGAGGAGATaaaaaaaCTGTTCAGTCTTAGGAAAAAGAAG---A-G--CA 403 |||| ||||||||||||||| ||||||||||||||||||||||||||| | | || Sbjct 353 ATGAGGATGCTGAGGAGATAGCCAAACTGTTCAGTCTTAGGAAAAAGAAGTGCAAGAGCA 412 Query 404 AGTGCGATAAAACCTCCATGGAGATTGGGATGCAAGTAGAACAAGTGATGGCGAATCTTG 463 || ||||||||| | | |||||||||| |||||||||||||||||||||||||||||||| Sbjct 413 AGAGCGATAAAAACGCAATGGAGATTGCGATGCAAGTAGAACAAGTGATGGCGAATCTTG 472 Query 464 AAATCGCGGTAGAAGACGACGTAATTTGTAA-CAGAGAAGGAAAACCCGCCATTAATAAA 522 ||||||| |||||||||||||||||| ||| |||||||||||||||||| |||||||| Sbjct 473 AAATCGCTGTAGAAGACGACGTAATTC-TAAACAGAGAAGGAAAACCCGCTATTAATAAG 531 Query 523 CTCATGAAGTTACCTCTTCTCAATGAAACTCTCTCAAAGAAACCTCTTCAAGGTGAGTTC 582 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 532 CTCATGAAGTTACCTCTTCTCAATGAAACTCTCTCAAAGAAACCTCTTCAAGCTGAGTTC 591 Query 583 TTAGACCATGGAGTACTTAACCTTCTCAAGAATTGGCTCGAGCCGCTTCCTGATGGTAGC 642 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 TTAGATCATGGAGTACTTAACCTTCTCAAGAATTGGCTCGAGCCGCTTCCTGATGGTAGC 651 Query 643 TTGCCGAATATAAACATCCGCAGTGCCGTTTTGATGATTCTCAACGATTTTCGTATCGAT 702 || || |||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 652 TTACCAAATATAAACATCCGCACTGCCGTTTTGATGATTCTTAACGATTTTCGTATCGAT 711 Query 703 CTTGATCAAGACTCTAGAAGAGAACAGTTGATCAAGAGCGGTCTCGGGAAGGTCATAATG 762 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 CTAGATCAAGACTCTAGAAGAGAACAGTTGATCAAGAGCGGTCTCGGGAAGGTCATAATG 771 Query 763 TTCTTATCAAAATCAGATGAAGAAACTACACCTAATAGGAGACTCGCTAATGATATAATC 822 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 772 TTCTTATCAAAATCAGATGAAGAAACCACACCTAATAGGAGACTCGCTAATGATTTAATC 831 Query 823 AACAAATGGGGCCGTATCATTTATAATAAGAGCACAAGATATGATAACATGTTTACTCAG 882 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 832 AACAAATGGGGCCGTATCATTTATAATAAGAGCACAAGATATGATAAGATGTTTAGTCAG 891 Query 883 GAGGAACTTGATGAGCAACGGCAAATACTATTAAGAAGACAGACCAAAACAGCTCCTAAG 942 ||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||||| Sbjct 892 GAGGAACTTGAAGAGCAACGGCAAATGCTATTAAGAAGACAGATCAAGACAGCTCCTAAG 951 Query 943 GTGTCTGGAACAAGAGCTAGAGACTTTAATACAGATATTGACCTTTATGAGCTAGGAACT 1002 ||||||| ||||| |||| || ||||| |||||||| |||||||||||| ||||||| || Sbjct 952 GTGTCTGAAACAAAAGCTCGAAACTTTGATACAGATCTTGACCTTTATGTGCTAGGACCT 1011 Query 1003 TGGACAGGAAGAGCAAGAGCAAAAATACCAACAACAATGTCGATGGACTTTAAGATCCGT 1062 |||||||||||||||||||| |||||||||||| || | ||||||||||||| ||||||| Sbjct 1012 TGGACAGGAAGAGCAAGAGCGAAAATACCAACAGCATTATCGATGGACTTTAGGATCCGT 1071 Query 1063 CCTCCATCGAAGGTTGACATTAACCAAGAAGAGGAACCTTGTTCCAAGTGGCAAATGGAA 1122 |||||| |||||||||||| || ||| ||| ||||| |||||||| ||||||| Sbjct 1072 CCTCCACCGAAGGTTGACA--AA----GAACCTGAAGCTTGTGCCAAGTGGGAAATGGAC 1125 Query 1123 AAAAGACATAAAAACAAGCAGCAAAAGAACATCAGGAAAGGGGGCATGCAAGCATTGAAG 1182 |||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| ||| Sbjct 1126 AAAAGACATAAAAACAAGCAGCGAAAGATCATCAGGAAAAAGGGCATGCAAGCATTCAAG 1185 Query 1183 CTTAGTGTAGACGGACGCACTATGCTCAAGTACTTGTAG 1221 ||||||||||||||||||||||||||||||||||||||| Sbjct 1186 CTTAGTGTAGACGGACGCACTATGCTCAAGTACTTGTAG 1224 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45595008732 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5