BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19000.1
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492959 jgi|Araly1|492959|fgenesh2_kg.7__2392__AT4G19000.1 1664 0.0
> Ahg492959 jgi|Araly1|492959|fgenesh2_kg.7__2392__AT4G19000.1
Length=1224
Score = 1664 bits (901), Expect = 0.0
Identities = 1132/1239 (91%), Gaps = 33/1239 (3%)
Strand=Plus/Plus
Query 1 ATGCAAGAGTTAGACT-CTTCTAACGATGAATGGGTGAAAGAACTT---GAAG-----GA 51
|||||||||||||| | |||||||||||| ||||||||||||||| |||| ||
Sbjct 1 ATGCAAGAGTTAGA-TGATTCTAACGATGACTGGGTGAAAGAACTTGAAGAAGTTCTCGA 59
Query 52 -GAGAACGAGGAATCGAAATTCACAGGGAGGAGATTAGTTAAAAAGTCGATTTCTGTTCC 110
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGATAACGAGGAATCGAAATTCACAGGGAGGAGATTAGTTAAAAAGTCGATTTCTGTTCC 119
Query 111 TGAATTGGTAGACGAAGTTGAAGAAGATCTCGACGATTTTACAGAACCTGCGGATGATTT 170
|||||||||||| |||||||| |||||||| ||||||||| || |||| |||||||||
Sbjct 120 TGAATTGGTAGATGAAGTTGACGAAGATCTTAACGATTTTATGGAGCCTGAGGATGATTT 179
Query 171 TAATGACAAAGTAGGgaagaagagacagaggaagaagaaagatgagtctggtcttgagaa 230
|||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||
Sbjct 180 TAATGACAAAGTAGGGAAGAAGAGACAGAGGAAGAA-A--GATGAGTCTGTTCTTGAGAA 236
Query 231 gacaaaaaagaacaagaagCAAAATTCCGAAGAGGTTCAAGAGATGTGGGATTCAATTAC 290
||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 237 GACGAAGAAGAA---GAAGCAAAATTCCGCAGAGGTTCAAGAGATGTGGGATTCAATTAC 293
Query 291 GAACAACA-CTAACTCACAGTATGGTGATAAGGTCGTAGTAAAACCTCCTAAGAAAAAAG 349
|||| ||| | ||||| ||| |||||||||| ||||||||||||| ||||||||||||||
Sbjct 294 GAACGACAAC-AACTCCCAGGATGGTGATAAAGTCGTAGTAAAACGTCCTAAGAAAAAAG 352
Query 350 ATGAAGATGCTGAGGAGATaaaaaaaCTGTTCAGTCTTAGGAAAAAGAAG---A-G--CA 403
|||| ||||||||||||||| ||||||||||||||||||||||||||| | | ||
Sbjct 353 ATGAGGATGCTGAGGAGATAGCCAAACTGTTCAGTCTTAGGAAAAAGAAGTGCAAGAGCA 412
Query 404 AGTGCGATAAAACCTCCATGGAGATTGGGATGCAAGTAGAACAAGTGATGGCGAATCTTG 463
|| ||||||||| | | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 413 AGAGCGATAAAAACGCAATGGAGATTGCGATGCAAGTAGAACAAGTGATGGCGAATCTTG 472
Query 464 AAATCGCGGTAGAAGACGACGTAATTTGTAA-CAGAGAAGGAAAACCCGCCATTAATAAA 522
||||||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct 473 AAATCGCTGTAGAAGACGACGTAATTC-TAAACAGAGAAGGAAAACCCGCTATTAATAAG 531
Query 523 CTCATGAAGTTACCTCTTCTCAATGAAACTCTCTCAAAGAAACCTCTTCAAGGTGAGTTC 582
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 532 CTCATGAAGTTACCTCTTCTCAATGAAACTCTCTCAAAGAAACCTCTTCAAGCTGAGTTC 591
Query 583 TTAGACCATGGAGTACTTAACCTTCTCAAGAATTGGCTCGAGCCGCTTCCTGATGGTAGC 642
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TTAGATCATGGAGTACTTAACCTTCTCAAGAATTGGCTCGAGCCGCTTCCTGATGGTAGC 651
Query 643 TTGCCGAATATAAACATCCGCAGTGCCGTTTTGATGATTCTCAACGATTTTCGTATCGAT 702
|| || |||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 652 TTACCAAATATAAACATCCGCACTGCCGTTTTGATGATTCTTAACGATTTTCGTATCGAT 711
Query 703 CTTGATCAAGACTCTAGAAGAGAACAGTTGATCAAGAGCGGTCTCGGGAAGGTCATAATG 762
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 CTAGATCAAGACTCTAGAAGAGAACAGTTGATCAAGAGCGGTCTCGGGAAGGTCATAATG 771
Query 763 TTCTTATCAAAATCAGATGAAGAAACTACACCTAATAGGAGACTCGCTAATGATATAATC 822
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 772 TTCTTATCAAAATCAGATGAAGAAACCACACCTAATAGGAGACTCGCTAATGATTTAATC 831
Query 823 AACAAATGGGGCCGTATCATTTATAATAAGAGCACAAGATATGATAACATGTTTACTCAG 882
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 832 AACAAATGGGGCCGTATCATTTATAATAAGAGCACAAGATATGATAAGATGTTTAGTCAG 891
Query 883 GAGGAACTTGATGAGCAACGGCAAATACTATTAAGAAGACAGACCAAAACAGCTCCTAAG 942
||||||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||
Sbjct 892 GAGGAACTTGAAGAGCAACGGCAAATGCTATTAAGAAGACAGATCAAGACAGCTCCTAAG 951
Query 943 GTGTCTGGAACAAGAGCTAGAGACTTTAATACAGATATTGACCTTTATGAGCTAGGAACT 1002
||||||| ||||| |||| || ||||| |||||||| |||||||||||| ||||||| ||
Sbjct 952 GTGTCTGAAACAAAAGCTCGAAACTTTGATACAGATCTTGACCTTTATGTGCTAGGACCT 1011
Query 1003 TGGACAGGAAGAGCAAGAGCAAAAATACCAACAACAATGTCGATGGACTTTAAGATCCGT 1062
|||||||||||||||||||| |||||||||||| || | ||||||||||||| |||||||
Sbjct 1012 TGGACAGGAAGAGCAAGAGCGAAAATACCAACAGCATTATCGATGGACTTTAGGATCCGT 1071
Query 1063 CCTCCATCGAAGGTTGACATTAACCAAGAAGAGGAACCTTGTTCCAAGTGGCAAATGGAA 1122
|||||| |||||||||||| || ||| ||| ||||| |||||||| |||||||
Sbjct 1072 CCTCCACCGAAGGTTGACA--AA----GAACCTGAAGCTTGTGCCAAGTGGGAAATGGAC 1125
Query 1123 AAAAGACATAAAAACAAGCAGCAAAAGAACATCAGGAAAGGGGGCATGCAAGCATTGAAG 1182
|||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||
Sbjct 1126 AAAAGACATAAAAACAAGCAGCGAAAGATCATCAGGAAAAAGGGCATGCAAGCATTCAAG 1185
Query 1183 CTTAGTGTAGACGGACGCACTATGCTCAAGTACTTGTAG 1221
|||||||||||||||||||||||||||||||||||||||
Sbjct 1186 CTTAGTGTAGACGGACGCACTATGCTCAAGTACTTGTAG 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45595008732
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5