BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G19003.2

Length=946
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329638 jgi|Araly1|329638|fgenesh1_pm.C_scaffold_7001865           915    0.0  


> Ahg329638 jgi|Araly1|329638|fgenesh1_pm.C_scaffold_7001865
Length=540

 Score =  915 bits (495),  Expect = 0.0
 Identities = 525/540 (97%), Gaps = 0/540 (0%)
 Strand=Plus/Plus

Query  276  ATGCAGAAATTGGCTGATTTCAAGCTTCCTCAATTCTTCAATTATCCTCCATACTTCACT  335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCAGAAATTGGCTGATTTCAAGCTTCCTCAATTCTTCAATTATCCTCCATACTTCACT  60

Query  336  TTGCAGCCTGTGAGGGACACTCGTGAGAAACAGATACAGCTCTGGAAAGAGCTTATTTTG  395
            |||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||
Sbjct  61   TTGCAGCCTGTGAGGGACACGCGTGAGAAGCAAATACAGCTCTGGAAAGAACTTATTTTG  120

Query  396  GATTACTGCAAATCCCAAAAGATTTTCTTGATTGGTGTTGAAGAAGATTTCCCTCTCTTC  455
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  121  GATTACTGCAAATCTCAAAAGATTTTCTTGATTGGCGTTGAAGAAGATTTCCCTCTCTTC  180

Query  456  TCAAACTCTGCCATTGATAGATCTCTAAGTCATGAAGCAAGGGAAACATTTCTTTCAGCC  515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct  181  TCAAACTCTGCCATTGATAGATCTCTAAGTCATGAAGCAAGGGAAACATTTCTCTCTGCC  240

Query  516  ATTGTTGGTGAAGGGCGTGCGGAGTGGTTAGATAAAGGGCATAGGAAATGTCTTATTCTG  575
            |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  241  ATTGTTGGAGAAGGGCGTGCAGAGTGGTTAGATAAAGGGCATAGGAAATGTCTGATTCTG  300

Query  576  TGGCACCGGATTCAAGATTGGGCAGACATTGTTCTTCAGTTTGTGAGAGATAATGGATTA  635
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  301  TGGCACCGGATTCAAGATTGGGCAGACATTATTCTTCAGTTTGTGAGAGATAATGGATTA  360

Query  636  GAGGACAGTGTTATGACTGTTGAAGAAATACGTTCAGGGACAGAATCACTTGGAACAGAA  695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GAGGACAGTGTTATGACTGTTGAAGAAATACGTTCAGGGACAGAATCACTTGGAACAGAA  420

Query  696  CTTCAAGGGATTGATCGGACGATTCTAATGAGGGCCTTAAAGCTGCTAGAGAACAAGGGC  755
            ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  421  CTTCAAGGGATCGATCGGACGATTCTAATGAGGGCTTTAAAGCTTCTAGAGAACAAGGGC  480

Query  756  AAGCTTGCATTGTTCAAGGGAACATCAGCAGATGATGAAGGCGTCAAGTTCTCTGTCTGA  815
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  AAGCTTGCATTGTTCAAGGGAACATCAGCAGATGATGAAGGCGTCAAGTTCTCTGTCTGA  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35111206557


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5