BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19006.1
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946280 jgi|Araly1|946280|scaffold_702509.1 1982 0.0
Ahg494422 jgi|Araly1|494422|fgenesh2_kg.8__238__AT5G45620.1 1367 0.0
> Ahg946280 jgi|Araly1|946280|scaffold_702509.1
Length=1202
Score = 1982 bits (1073), Expect = 0.0
Identities = 1157/1199 (96%), Gaps = 0/1199 (0%)
Strand=Plus/Plus
Query 99 TGTTTCTTCGAAAATCTACCATGGCTGCTCTACAATACCTTGAATCGCAGAAAAATGCGC 158
||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 TGTTTCTTCGAGAATCTGCCATGGCTGCTCTACAGTACCTTGAATCGCAGAAAAATGCGC 60
Query 159 ACCCAGAGCTTGGTGAGTGGTACAATTCGCTCGCAGATCTGTACCAGAAGAAGCTCTGGC 218
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 ACCCAGAGCTTGGCGAGTGGTACAATTCGCTCGCAGATCTGTACCAGAAGAAGCTTTGGC 120
Query 219 ATCAGCTCACTCTTAAGCTCGAGCAGTTCATCGCTCTCTCTGTCTTTCAGGCTGGAGATG 278
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 ATCAGCTCACTCTTAAGCTCGAGCAGTTCATTGCTCTCTCTGTCTTTCAGGCTGGAGATG 180
Query 279 CTTTAATACAGCTTTACAACAATTTCATCACTGACTTTGAGACGAGGATCAATCTTCTGA 338
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 CTTTAATACAGCTTTACAACAATTTCATCACTGACTTTGAGACGAGGATCAACCTTCTGA 240
Query 339 AGCTTGCGCATTTCGCTGTTGTAGTCTCCCGACAGTATCCTGAGAAAGAAGCTGCAGTTA 398
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 241 AGCTTGCGCATTTCGCGGTTGTAGTCTCCCGGCAGTACCCTGAGAAAGAAGCTGCGGTTA 300
Query 399 GTTATCTTGAAGGAGTGATTGAGAAGCTTAAAGCTACTAAAGAGTCAAGGATAAATGAAC 458
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 301 GTTATCTTGAAGGAGTGATTGAAAAGCTTAAAGCTACTAAAGAGTCAAGGATAAATGAGC 360
Query 459 CAATTAGCTATATAGAAACACAAATAGCTTTGTTCAAGCTTGAGCAAGGTGACCAGAAGG 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAATTAGCTATATAGAAACACAAATAGCTTTGTTCAAGCTTGAGCAAGGTGACCAGAAGG 420
Query 519 AGTGCAAGAAAATCTTGGACGATGGAAAAAGCCTGCTTGATAGTATGACTGACATTGATC 578
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AATGCAAGAAAATCTTGGACGATGGAAAAAGCTTGCTTGATAGTATGACTGACATTGATC 480
Query 579 CATCAGTTTATGCCAACTTCTTTTGGGTCTCTTCTCAGTACCATAAAGTCCGTCAAGAGT 638
||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 481 CATCAGTCTATGCCAACTTCTTTTGGGTGTCTTCTCAGTACCATAAATTCCGTCAAGAGT 540
Query 639 TCTCTGAGTTCTATAAAAATGCTCTTCTTTACCTCGCTTATACGTCTGTGGACTCACTCT 698
| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 541 TTTCTGAGTTCTATAAAAATGCTCTTCTTTACCTTGCTTATACGTCTGTGGAGTCACTCT 600
Query 699 CGGAATCATTTAAGCTGGATTTGGCTTTTGATTTGTCGCTTTCAGCTCTACTTGGGGAGA 758
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 601 CGGAATCATTCAAGCTGGATTTGGCTTTTGATTTGTCGCTTTCAGCTCTACTTGGAGATA 660
Query 759 ATATCTATAACTTTGGGGAACTGTTAGCCCATCCAATTTTGAAAAGTCTGCTTGGAACAA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATATCTATAACTTTGGGGAACTGTTAGCCCATCCAATTTTGAAAAGTCTGCTTGGAACAA 720
Query 819 ATGTGGAATGGCTTTACCACATTCTACAAGCATTCAACCACGGAGATTTAGTTCAGTACC 878
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 721 ATGTGGAATGGCTTTACCACATTCTACAAGCATTCAACCATGGTGATTTAGTTCAGTATC 780
Query 879 AAGAACTCTGTCGTGTGCACAATGCATCGTTGAGTGCTCAACCAGCACTGGTTGAGAATG 938
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 781 AAGAACTCTGTCGTGTGCACAACGCATCATTGAGTGCTCAACCCGCACTGGTTGAGAATG 840
Query 939 AGAAGAAACTATTAGAGAAGATCAACATTCTCTGCCTTATTGAGATCATTTTCAGCCGAC 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGAAGAAACTATTAGAGAAGATCAACATTCTCTGCCTTATTGAGATCATTTTCAGCCGAC 900
Query 999 CTGCTGAAGATAGGACCATACCTTTGAGTGTCATTGCCGAGCGTACTAAACTTTCAATCG 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTGCTGAAGATAGGACCATACCTTTGAGTGTCATTGCCGAGCGTACTAAACTTTCAATCG 960
Query 1059 AAGATGTTGAGCACCTTCTCATGAAGAGCTTATCGGTGCACTTGATAGAGGGAATACTAG 1118
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 961 AAGATGTTGAACACCTTCTCATGAAGAGCTTATCTGTGCACTTGATAGAGGGAATATTAG 1020
Query 1119 ATCAGGTGAATGGAACAGTTTACGTCTCATGGGCGCAACCGAGGGTGTTAGGAATACCGC 1178
||||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||
Sbjct 1021 ATCAGGTGAATGGAACAGTATACATCTCATGGGCGCAACCGAGGGTGTTAGGGATTCCGC 1080
Query 1179 AGATCAAGTCATTGAGGGATCAGCTAGACAGCTGGGTCGATAAGGTTCACACCACATTGT 1238
||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1081 AGATCAAGTTATTGAGGGATCAGCTAGACAGTTGGGTCGATAAGGTTCACACTACATTGT 1140
Query 1239 TATCTGTTGAGGCCGAGACACCTGATCTTGTTGCAGCTTAAACTCTTCTTTCCTCTTTT 1297
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1141 TATCTGTTGAGGCCGAGACACCTGATCTTGTTGCAGCTTAAACCCTTGTTTCCTCTTTT 1199
> Ahg494422 jgi|Araly1|494422|fgenesh2_kg.8__238__AT5G45620.1
Length=1381
Score = 1367 bits (740), Expect = 0.0
Identities = 1032/1173 (88%), Gaps = 20/1173 (2%)
Strand=Plus/Plus
Query 117 CCATGGCTGCTCTACAATACCTT-GAATCGCAGAAAAATGCGCACCCAGAGCTTGGTGAG 175
||||||||||||| ||||| ||| ||||| | ||||||||| || |||||||| |||||
Sbjct 77 CCATGGCTGCTCTTCAATA-CTTGGAATCTCTGAAAAATGCCCATCCAGAGCTCGGTGAA 135
Query 176 TGGTACAATTCGCTCGCAGATCTGTACCAGAAGAAGCTCTGGCATCAGCTCACTCTTAAG 235
||||||||||| || ||||||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct 136 TGGTACAATTCCCTTGCAGATCTGTATCAGAAAAAGCTCTGGCATCAACTCACCCTTAAG 195
Query 236 CTCGAGCAGTTCATCGCTCTCTCTGTCTTTCAGGCTGGAGATGCTTTAATACAGCTT-TA 294
||||| ||||||||||||||| ||||||||||||||||||||||| |||| ||| || ||
Sbjct 196 CTCGAACAGTTCATCGCTCTCGCTGTCTTTCAGGCTGGAGATGCTCTAATTCAG-TTCTA 254
Query 295 -CAACAATTTCATCACTGACTTTGAGACGAGGATCAATCTTCTGAAGCTTGCGCATTTCG 353
| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 255 TC-ACAATTTCATCACTGACTTTGAGACGAAGATCAATCTTCTGAAGCTTGCACATTTTG 313
Query 354 CTGTTGTAGTCTCCCGACAGTATC-CTGAGAAAGAAGCTGCAGTTAGTTATCTTGAAGGA 412
|||| || ||||| |||||||| | |||||||||||||||||||||| ||||||||| |
Sbjct 314 CTGTGGTGGTCTCTCGACAGTA-CTCTGAGAAAGAAGCTGCAGTTAGCTATCTTGAAAGC 372
Query 413 GTGATTGAGAAGCTTAAAGCTACTAAAGAGTCAAGGATAAATGAACCAATTAGCTATATA 472
||||||||||| |||| ||||||||||||| | |||| | |||||| || | |||||
Sbjct 373 GTGATTGAGAAACTTAGAGCTACTAAAGAGCCTCGGATTACTGAACCGATCATTTATATT 432
Query 473 GAAACACAAATAGCTTTGTTCAAGCTTGAGCAAGGTGACCAGAAGGAGTGCAAGAAAATC 532
|||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 433 GAAACACAAAAAGCTCTGTTCAAGCTTGAGCAAGGTGATCAGAAGGAGTGCAAGAAAATC 492
Query 533 TTGGACGATGGAAAAAGC-CTGCTTGATAGTATGACTGACATTGATCCATCAGTTTATGC 591
||||| |||||||| ||| || ||||| ||||||||||||||||||||||| || |||||
Sbjct 493 TTGGATGATGGAAAGAGCTCT-CTTGACAGTATGACTGACATTGATCCATCGGTCTATGC 551
Query 592 CAACTTCTTTTGGGTCTCTTCTCAGTACCATAAAGT-CCGTCAAGAGTTCTCTGAGTTCT 650
|||||||| |||||| ||||||||||||||| |||| ||||||||| || ||||| ||||
Sbjct 552 CAACTTCTATTGGGTGTCTTCTCAGTACCAT-AAGTCCCGTCAAGAATTTTCTGATTTCT 610
Query 651 ATAAAAATGCTCTTCTTTACCTCGCTTATACGTCTGTGGACTCA-CTCTCGGAATCATTT 709
| |||| |||||| ||||| || || || ||||||||||| | ||||| ||||| |||
Sbjct 611 ACAAAAGTGCTCTACTTTATCTTGCATACACGTCTGTGGA-GGACCTCTCAGAATCGTTT 669
Query 710 AAGCTGGATTTGGCTTTTGATTTGTCGCTTTCAGCTCTACTTGGGGAGAATATCTATAAC 769
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 670 AAGCTGGATTTGGCTTTCGATTTGTCACTTTCAGCTCTACTTGGGGAGAACATCTATAAC 729
Query 770 TTTGGGGAACTGTTAGCCCATCCAATTTTGAAAAGTCTGCTTGGAACAAATGTGGAATGG 829
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 730 TTTGGGGAACTGTTAGCCCATCCCATTTTGAAAAGTCTCCTTGGAACAAATGTGGAATGG 789
Query 830 CTTTACCACATTCTACAAGCATTCAACCACGGAGATTTAGTTCAGTACCAAGAACTCTGT 889
|| |||||||||||||| |||||||| || || ||||||||||| || |||||||| ||
Sbjct 790 CTCTACCACATTCTACAGGCATTCAATCATGGTGATTTAGTTCAATATCAAGAACTATGC 849
Query 890 CGTGTGCACAATGCATCGTTGAGTGCTCAACCAGCACTGGTTGAGAATGAGAAGAAACTA 949
||||||||||| ||||| |||| ||| |||||||||||||||||||| |||||||| ||
Sbjct 850 CGTGTGCACAACGCATCCTTGATTGCGCAACCAGCACTGGTTGAGAACGAGAAGAAGCTT 909
Query 950 TTAGAGAAGATCAACATTCTCTGCCTTATTGAGATCATTTTCAGCCGACCTGCTGAAGAT 1009
|| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 910 TTGGAAAAGATCAACATTCTCTGCCTTATCGAGATCATCTTCAGCCGACCTGCTGAAGAT 969
Query 1010 AGGACCATACCTTTGAGTGTCATTGCCGAGCGTACTAAACTTTCAATCGAAGATGTTGAG 1069
|| ||||| ||||||||| |||| || ||||||||||||||||| || ||||||||||||
Sbjct 970 AGAACCATTCCTTTGAGTATCATCGCTGAGCGTACTAAACTTTCTATTGAAGATGTTGAG 1029
Query 1070 CACCTTCTCATGAAGAGC-TTATCGGTGCA-CTTGATAGAGGGAAT-ACTAGATCAGGTG 1126
|||||||||||||||||| || || ||||| || || ||||| || | |||| || |||
Sbjct 1030 CACCTTCTCATGAAGAGCCTT-TCTGTGCATCTA-ATTGAGGGCATCA-TAGACCAAGTG 1086
Query 1127 AATGGAACAGTTTACGTCTCATGGGCGCAACCGAGGGTGTTAGGAATACCGCAGATCAAG 1186
|||||||||||||||||||||||||| |||||||| || |||| || || |||||||||
Sbjct 1087 AATGGAACAGTTTACGTCTCATGGGCACAACCGAGAGTACTAGGGATTCCACAGATCAAG 1146
Query 1187 TCATTGAGGGATCAGCTAGACAGCTGGGTCGATAAGGTTCACACCACATTGTTATCTGTT 1246
| ||||||||||| | ||||| ||||| || || ||||||||||| ||| ||||||||
Sbjct 1147 GCTTTGAGGGATCAATTGGACAGTTGGGTTGACAAAGTTCACACCACTTTGCTATCTGTT 1206
Query 1247 GAGGCCGAGACACCTGATCTTGTTGCAGCTTAA 1279
|| ||||||||||| ||||||||||| ||||||
Sbjct 1207 GAAGCCGAGACACCAGATCTTGTTGCCGCTTAA 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54050057655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5