BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19010.1
Length=1954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492955 jgi|Araly1|492955|fgenesh2_kg.7__2388__AT4G19010.1 2942 0.0
> Ahg492955 jgi|Araly1|492955|fgenesh2_kg.7__2388__AT4G19010.1
Length=1978
Score = 2942 bits (1593), Expect = 0.0
Identities = 1838/1954 (94%), Gaps = 26/1954 (1%)
Strand=Plus/Plus
Query 21 TCTCTCTAATGGCGGCGACACATCTTCACATACCGCCAAATCCTAAAACCCAAACGTCTC 80
||||||||||||||||||| |||||||||||| | |||||| |||||| ||||||||||
Sbjct 30 TCTCTCTAATGGCGGCGACGCATCTTCACATATCACCAAATGATAAAACACAAACGTCTC 89
Query 81 ACCAAAACCCTCCCTTTTGGTTCTCTTCTAAAACAGGAATCTACACCAGCAAATTCCCTT 140
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 90 ACCAAAACCCTCCCTTTTGGTTCTCTCCTAAAACAGGAATCTACTCCAGCAAATTCCCCT 149
Query 141 CCCTACACCTCCCCGTCGACCCAAATCTCGACGCCGTCTCCGCTCTTTTCTCACACAAAC 200
|| | |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 150 CCGTCCACCTCCCCGTCGACCCAAATCTCGACGCCGTCTCCGCCCTTTTCTCTCACAGAC 209
Query 201 ACCACGGCGATACAGCGCTCATCGATTCCTTAACCGGGTTCTCAATATCTCACACTGAGC 260
|| ||||||| | |||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 210 ACGGCGGCGATGCCGCGCTCGTCGATTCCTTAACCGGGTTTTCGATATCTCACACTGAGC 269
Query 261 TACAGATTATGGTTCAATCAATGGCGGCTGGGATCTATCACGTTTTAGGTGTTCGTCAAG 320
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 270 TACAGATTATGGTTCAATCAATGGCGGCTGGGATTTATCACGTTTTGGGTGTTCGTCAAG 329
Query 321 GTGACGTTGTATCACTCGTCTTGCCTAATTCCGTCTATTTTCCGATGATTTTCCTCTCTT 380
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 330 GTGACGTTGTATCACTCGTGTTGCCTAATTCCGTCTATTTTCCGATGATTTTCCTCTCGT 389
Query 381 TGATCTCGCTTGGTGCTATTGTTACTACCATGAATCCTTCGAGTAGTTTAGGAGAGATTA 440
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 390 TGATTTCGCTTGGTGCTATTGTTACTACCATGAATCCTTCGAGTAGTTTGGGAGAGATTA 449
Query 441 AGAAGCAAGTTAGTGAGTGTAGTGTTGGATTAGCTTTTACTTCTACTGAAAACGTTGAGA 500
|||||||||| |||||||||| |||||| ||||| ||||||||| ||||||||||||| |
Sbjct 450 AGAAGCAAGTGAGTGAGTGTAATGTTGGTTTAGCGTTTACTTCTGCTGAAAACGTTGACA 509
Query 501 AGCTGAGTTCTTTGGGGGTTAGTGTGATTAGT-GTATCTGAAAGTTACGATTTTGATTCG 559
|| |||||||||||| |||||| ||||||| | ||| |||||||||||||||||||||||
Sbjct 510 AGTTGAGTTCTTTGGAGGTTAGGGTGATTA-TAGTACCTGAAAGTTACGATTTTGATTCG 568
Query 560 ATTCGTATCGAAAACCCGAAGTTTTAC-TCCATTATGAAAGAAAGTTTTGGGTTTGTACC 618
||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||
Sbjct 569 ATTCGTATCGAAAACCCGAAGTTTTACGT-CATTATGAAAGAAAGTTTCGGATTTGTACC 627
Query 619 AAAACCGTTGATTAAGCAAGACGATGTAGCTGCAATTATGTATTCATCTGGAACAACTGG 678
|||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 628 AAAACCGTCGATTAAGCAGGACGATGTAGCTGCAATTATGTATTCGTCTGGGACAACTGG 687
Query 679 AGCTAGTAAAGGAGTTTTGTTAACTCATAGGAATTTGATAGCATCAATGGAGCTTTTTGT 738
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 688 AGCTACTAAAGGAGTTTTGTTAACTCATAGGAATTTGATTGCATCAATGGAGCTTTTTGT 747
Query 739 GAGGTTTGAAGCTTCTCAGTACGAATATCCGGGATCGAGTAATGTTTATCTAGCAGCTTT 798
||||||||||||||| || |||||||||||||||| ||||||||||||||| ||||||||
Sbjct 748 GAGGTTTGAAGCTTCGCAATACGAATATCCGGGATTGAGTAATGTTTATCTGGCAGCTTT 807
Query 799 GCCTTTGTGCCATATCTACGGGTTATCACTCTTTGTGATGGGATTGTTGTCTCTGGGATC 858
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GCCTTTGTGTCATATCTACGGGTTATCACTCTTTGTGATGGGATTGTTGTCTCTGGGATC 867
Query 859 AACTATTGTTGTTATGAAGAGGTTTGATGCTTCTGATGTTGTTAATGTAATTGAAAGGTT 918
||| ||||||||||||| |||||| ||||||||||||||| | |||||||| ||||||||
Sbjct 868 AACCATTGTTGTTATGAGGAGGTTCGATGCTTCTGATGTTATCAATGTAATCGAAAGGTT 927
Query 919 TAAGATCACTCATTTCCCGGTTGTTCCACCTATGTTGATGGCATTGACAAAGAAGGCAAA 978
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 928 TAAGATCACTCATTTCCCGGTTGTTCCTCCTATGTTGATGGCATTGACAAAGAAGGCAAA 987
Query 979 AGGAGTTTGTGGTGAAGTGTTTAAAAGTTTGAAGCAAGTTTCTTCTGGAGCAGCTCCTTT 1038
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 988 AGGAGTTTGTGGGGAAGTGTTTAAAAGCTTGAAGCAAGTTTCTTCTGGAGCAGCTCCTTT 1047
Query 1039 GAGTAGGAAGTTCATTGAAGATTTCCTTCAGACTCTTCCTCATGTCGATTTGATTCAGGG 1098
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1048 AAGTAGCAAGTTCATTGAAGATTTCCTTCAGACTCTTCCTCATGTTGATTTGATTCAGGG 1107
Query 1099 ATATGGAATGACTGAATCAACTGCAGTTGGAACACGGGGCTTCAACTCGGAAAAGCTTAG 1158
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1108 ATATGGAATGACTGAATCAACCGCAGTTGGAACACGGGGCTTCAACTCGGAAAAGCTTGG 1167
Query 1159 TAGGTATTCTTCTGTGGGACTACTGGCTCCTAATATGCAAGCCAAGGTAGTAGATTGGAG 1218
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1168 TAGGTATTCTTCGGTGGGACTACTTGCTCCTAATATGCAAGCCAAGGTAGTAGATTGGAG 1227
Query 1219 CTCTGGTTCTTTCCTTCCACCAGGAAACCGAGGAGAGCTCTGGATACAAGGTCCCGGTGT 1278
|||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1228 CTCTGGTTGTTTCCTACCACCAGGAAACCGGGGAGAGCTCTGGATACAAGGTCCCGGTGT 1287
Query 1279 CATGAAAGGATACTTGAATAACCCAAAAGCAACTCAGATGAGTATAGTTGAAGATAGTTG 1338
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 CATGAAAGGGTACTTGAATAACCCAAAAGCAACTCAGATGAGTATAGTTGAAGATAGTTG 1347
Query 1339 GCTACGTACTGGGGATATTGCTTATTTTGATGAAGATGGTTACTTGTTTATTGTTGACCG 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 GCTACGTACTGGGGATATTGCTTATTTTGATGAAGATGGTTACTTGTTTATTGTTGACCG 1407
Query 1399 TATTAAGGAGATTATAAAGTACAAAGGCTTTCAGATCGCTCCAGCAGATTTGGAGGCTGT 1458
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1408 TATTAAGGAGATTATTAAGTACAAAGGGTTTCAGATCGCACCAGCAGATTTGGAGGCTGT 1467
Query 1459 TCTTGTTTCACATCCCTTGATTATCGACGCTGCAGTAACAGCTGCCCCAAATGAAGAATG 1518
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1468 TCTTGTTTCACATCCTTTGATTATCGACGCTGCAGTAACAGCGGCCCCAAATGAAGAATG 1527
Query 1519 TGGAGAGATTCCGGTAGCATTCGTTGTCCGGAGACAAGAAACAACACTTTCAGAAGAAGA 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1528 TGGAGAGATTCCGGTAGCATTCGTTGTCCGGAGACAAGAAACAACACTTTCAGAACAAGA 1587
Query 1579 TGTAATAAGCTATGTAGCTTCTCAGGTTGCACCCTACAGGAAGGTGAGGAAAGTGGTGAT 1638
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1588 TGTAATAAGCTATGTAGCTGCTCAGGTTGCACCGTACAGGAAGGTGAGGAAAGTGGTGAT 1647
Query 1639 GGTCAACTCTATACCAAAATCTCCAACTGGGAAGATATTGAGAAAGGAACTAAAGAGAAT 1698
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 GGTTAGCTCTATACCAAAATCTCCAACTGGGAAGATATTGAGAAAGGAACTAAAGAGAAT 1707
Query 1699 TCTTACAAACTCTGTTTCTTCAAGACTATGATTCTTTCTTCATTTGTTTGGTAATAAGTA 1758
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1708 TCTAACAAACTCTGTTTCTTCAAGACTATGATTCTTTCTTCATTTGTTTGGAAATAAGTA 1767
Query 1759 GCAGACAGAGAGATCC-ACTAATATAGCCTTCATAACTCAATT---------CATTGGTT 1808
||| |||||||||||| |||||||||||||| |||| |||||| ||||||||
Sbjct 1768 GCACACAGAGAGATCCCACTAATATAGCCTTTATAATTCAATTAGTATTATTCATTGGTT 1827
Query 1809 TTGTAGCATCAAAAGAAA-TAAACAGACACATTCTTTGATTCTCAGTGAATAA-AGCA-T 1865
||||||| |||||||||| ||| |||| ||||||||||||||||||||||||| | || |
Sbjct 1828 TTGTAGCTTCAAAAGAAACTAAGCAGAGACATTCTTTGATTCTCAGTGAATAATAACAAT 1887
Query 1866 TGTAACCCAATAC--GGAAACAAAAATTCTTTCTGAGCCCAAAAT-GTAATTTTAGCC-T 1921
|||||||||| || ||||||||||||||||||||||||| |||| ||||||| |||| |
Sbjct 1888 TGTAACCCAA-ACCCGGAAACAAAAATTCTTTCTGAGCCCTAAATTGTAATTT-AGCCAT 1945
Query 1922 TAGTATTTT--ATTTACATAAAAGTCCTTTTAAT 1953
| ||||||| |||||||||||||||||||||||
Sbjct 1946 T-GTATTTTTTATTTACATAAAAGTCCTTTTAAT 1978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73437992360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5