BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19030.1
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492953 jgi|Araly1|492953|fgenesh2_kg.7__2386__AT4G19030.1 1740 0.0
Ahg492969 jgi|Araly1|492969|fgenesh2_kg.7__2402__AT4G18910.1 878 0.0
> Ahg492953 jgi|Araly1|492953|fgenesh2_kg.7__2386__AT4G19030.1
Length=1149
Score = 1740 bits (942), Expect = 0.0
Identities = 1089/1159 (94%), Gaps = 13/1159 (1%)
Strand=Plus/Plus
Query 17 AACAGTCGTTTATAGTTCAATCCTTTTCCTCTTCTTTGTTT-CTAAAAAGAGAAAAGTCA 75
|||||||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1 AACAGTCGTTTAAAGTTTAATCCTTTTCCTCTTCTTTGTTTCCAAAAAAGAGAAAAGTCA 60
Query 76 CTTATGGCGGATATCTCGGGAAACGGCTATGGCAACGCCAGAGAAGAAGTAGTAATGGTG 135
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 61 GTTATGGCGGATATCTCGGGAAACGGCTATGGCAACGCC--AG-AGAAGTAGTAATGGTG 117
Query 136 AATCTCAAGGATGAAGTCGAACATCAACAAGAAATGGAAGAC-ATTCATAACCCAAGACC 194
||||||||||| |||||||||||||||||| |||| |||| | || ||||||| | |||
Sbjct 118 AATCTCAAGGAAGAAGTCGAACATCAACAACAAATAGAAG-CTTTTGATAACCCTACACC 176
Query 195 CTTGAAGAAACAAGACTCTCTACTCTCAGTCTCTGTCCCTTTCTTACAAAAGTTGATCGC 254
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 177 CTTGAAGAAACAAGACTCCCTCCTCTCAGTCTCTGTCCCTTTCTTACAAAAGTTGATCGC 236
Query 255 GGAGTTTCTTGGAACCTACTTTTTGGTATTCACCGGTTGTGCATCGGTGGTTGTAAACAT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GGAGTTTCTTGGAACCTACTTTTTGGTATTCACCGGTTGTGCATCGGTGGTTGTAAACAT 296
Query 315 GCAAAACGACAATGTCGTGACTCTTCCAGGGATCGCTATCGTTTGGGGACTCACCATTAT 374
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 297 GCAAAACGACAATGTCGTGACTCTTCCAGGGATCGCCATCGTTTGGGGACTTACCATCAT 356
Query 375 GGTCCTCATTTACTCTCTTGGTCACATCTCTGGTGCTCATATCAATCCGGCCGTTACCAT 434
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 357 GGTCCTCATTTACTCTCTTGGTCACATCTCCGGTGCTCATATCAATCCGGCCGTTACCAT 416
Query 435 TGCCTTCGCCTCTTGTGGCCGTTTCCCTCTCAAACAGGTTCCAGCTTATGTCATATCACA 494
|||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 417 AGCCTTCGCGTCTTGCGGCCGTTTTCCTCTCAAACAGGTTCCGGCTTATGTCATATCACA 476
Query 495 AGTGATAGGATCAACGCTCGCGGCTGCGACATTACGGTTGTTGTTCGGACTTGATCACGA 554
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 477 AGTGATCGGATCAACGCTCGCGGCTGCGACTTTACGGTTGTTGTTCGGACTTGATCACGA 536
Query 555 CGTTTGTAGCGGAAAACACGATGTGTTTATCGGATCATCACCAGTGGGATCAGATCTTCA 614
|||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 537 CGTTTGTAGCGGGAAACATGATGTGTTTATCGGATCATCACCGGTGGGATCGGATCTGCA 596
Query 615 GGCGTTTACGATGGAGTTTATCGTCACTTTCTATCTAATGTTCATCATTTCTGGCGTTGC 674
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 597 GGCGTTTGTGATGGAGTTTATTGTCACTTTCTATCTAATGTTCATCATTTCTGGCGTTGC 656
Query 675 TACCGATAATAGAGCGATCGGAGAACTTGCTGGATTAGCAATAGGATCAACGGTGCTACT 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TACCGATAATAGAGCGATCGGAGAACTTGCTGGATTAGCAATAGGATCAACGGTGCTACT 716
Query 735 TAACGTGCTAATTGCCGCACCGGTATCGAGTGCGTCGATGAATCCAGGAAGAAGTTTAGG 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TAACGTGCTAATTGCCGCACCGGTATCGAGTGCGTCGATGAATCCAGGAAGAAGTTTAGG 776
Query 795 ACCTGCACTGGTCTATGGTTGCTACAAAGGAATTTGGATATACTTAGTTGCGCCAACTCT 854
||||||| |||| || ||||||||||||||||||||||| ||| ||||||| ||||||||
Sbjct 777 ACCTGCAATGGTGTACGGTTGCTACAAAGGAATTTGGATCTACATAGTTGCTCCAACTCT 836
Query 855 TGGTGCGATTGCGGGTGCATGGGTTTATAACACAGTTAGATATACCGATAAACCATTGCG 914
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 837 TGGTGCCATTGCGGGTGCATGGGTTTATAACACGGTTAGATATACCGATAAACCATTGCG 896
Query 915 AGAAATCACTAAAAGTGGTTCATTTCTAAAGACCGTGAGAATCGGTAGCACTTGATAAGA 974
|||||| |||||||||||||| ||| ||||||||||| ||||||||||| |||||||| |
Sbjct 897 AGAAATAACTAAAAGTGGTTCGTTTTTAAAGACCGTGCGAATCGGTAGCTCTTGATAAAA 956
Query 975 GAAAAGAAAACATGGG-TGGAGTTGATGGAGTATTTTCAAATGAATGTAACAACTTTCAC 1033
|||||||||| | || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 957 GAAAAGAAAAGAAACCATGAAGT-GATGGAGTATTTTCAAATGAATGTAACAACTTTCAC 1015
Query 1034 CACACCTTACGTATATGGCCTTTGTATTAATTGCTACGTTTATCTCTTTTATTGTTAACG 1093
||||||| ||||||||||| || |||||||||||||||||||||||||| ||| |||| |
Sbjct 1016 CACACCT-ACGTATATGGC-TT-GTATTAATTGCTACGTTTATCTCTTTCATT-TTAATG 1071
Query 1094 CCAAGATTCTCTATCTTGTTATTAATGTGTAACTGTATCGTATATTTTTTAAATAATAAA 1153
|||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1072 CCAAGATTTTCTATCTTGCTATTAATGTGTAACTGTATCGTATATTTTT-AAATAATAAA 1130
Query 1154 ATTCAATTCTAGAAAGATC 1172
|||||||||| ||||||||
Sbjct 1131 ATTCAATTCTGGAAAGATC 1149
> Ahg492969 jgi|Araly1|492969|fgenesh2_kg.7__2402__AT4G18910.1
Length=1086
Score = 878 bits (475), Expect = 0.0
Identities = 769/910 (85%), Gaps = 23/910 (3%)
Strand=Plus/Plus
Query 77 TTATGGCGGATATCTCGGGAAACGG-C-T-ATGGCAACGCCAGAGAAGAAG-TAGTAATG 132
|||||||||| |||||||| ||||| | | |||| | || ||||| | || | || |
Sbjct 35 TTATGGCGGAGATCTCGGGGAACGGCCATGGTGGCGATGCTAGAGACGGAGCT-GTTGTA 93
Query 133 GTGAATCTCAAGGATGAAGTCGAACATCAAC-A-AGAAATGGAAGAC-ATTCATAA-CCC 188
|||||||| ||||| |||| ||||||||||| | ||||| |||| | |||||||| ||
Sbjct 94 GTGAATCTTAAGGAAGAAGACGAACATCAACAACAGAAA--GAAG-CTATTCATAATCCT 150
Query 189 AAGACCCTTGAAGAAACAAGACTCTCTACTCTCAGTCTCTGTCCCTTTCTTACAAAAGTT 248
|| |||| ||||||||||||| ||||| |||||| |||||||||||||||| ||||||||
Sbjct 151 AA-ACCCATGAAGAAACAAGAGTCTCTCCTCTCAATCTCTGTCCCTTTCTTGCAAAAGTT 209
Query 249 GATCGCGGAGTTTCTTGGAACCTACTTTTTGGTATTCACCGGTTGTGCATCGGTGGTTGT 308
||| |||||| |||| ||||| ||||| ||| ||||| ||||||||||| |||||| ||
Sbjct 210 GATGGCGGAGGTTCTGGGAACGTACTTCTTGATATTCGCCGGTTGTGCAGCGGTGGCCGT 269
Query 309 AAACATGCAAAACGACAATGTCGTGACTCTTCCAGGGATCGCTATCGTTTGGGGACTCAC 368
|||| ||| | ||||| | ||||||||||||||||||||| |||||||||||||| ||
Sbjct 270 GAACACACAACATGACAAAGCCGTGACTCTTCCAGGGATCGCCATCGTTTGGGGACTTAC 329
Query 369 CATTATGGTCCTCATTTACTCTCTTGGTCACATCTCTGGTGCTCATATCAATCCGGCCGT 428
| | ||||| || ||||||||||||| |||||||| ||||||||| | |||||||||||
Sbjct 330 CGTCATGGTTCTTGTTTACTCTCTTGGCCACATCTCCGGTGCTCATTTTAATCCGGCCGT 389
Query 429 TACCATTGCCTTCGCCTCTTGTGGCCGTTTCCCTCTCAAACAGGTTCCAGCTTATGTCAT 488
|| || || ||||||||||| || ||||||||||| ||||||||||| |||||||| ||
Sbjct 390 CACAATCGCATTCGCCTCTTGCGGTCGTTTCCCTCTTAAACAGGTTCCGGCTTATGTGAT 449
Query 489 ATCACAAGTGATAGGATCAACGCTCGCGGCTGCGACATTACGGT-TGTTGTTCGGACTTG 547
|||||||||||| ||||| ||||| ||||| ||||| |||| || | |||||||||||||
Sbjct 450 ATCACAAGTGATCGGATCGACGCTTGCGGCGGCGACTTTAC-GTCTCTTGTTCGGACTTG 508
Query 548 ATCACGACGTTTGTAGCGGAAAACACGATGTGTTTATCGGATCATCACCAGT-GGGATCA 606
|||| ||||||||||| || |||||||||||||| ||||| ||| |||| | |||||
Sbjct 509 ATCAAGACGTTTGTAGTGGCAAACACGATGTGTTCGTCGGAACATTACCA-TCTGGATCG 567
Query 607 GATCTT-CAGGCGTTTACGATGGAGTTTATCGTCACTTTCTATCTAATGTTCATCATTTC 665
||| || ||| ||||| ||| ||||||||| | |||||||| || |||||| |||||||
Sbjct 568 GAT-TTGCAGTCGTTTGTGATTGAGTTTATCATTACTTTCTACCTTATGTTCGTCATTTC 626
Query 666 TGGCGTTGCTACCGATAATAGAGCGATCGGAGAACTTGCTGGATTAGCAATAGGATCAAC 725
|||||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 627 CGGCGTTGCCACCGATAATAGAGCGATCGGAGAACTTGCCGGACTAGCAGTAGGATCAAC 686
Query 726 GGTGCTACTTAACGTGCTAATTGCCGCACCGGTATCGAGTGCGTCGATGAATCCAGGAAG 785
|||||||||||||||| ||||||||| |||||||||| | || ||||||||||||||| |
Sbjct 687 GGTGCTACTTAACGTGATAATTGCCGGACCGGTATCGGGAGCATCGATGAATCCAGGACG 746
Query 786 AAGTTTAGGACCTGCACTGGTCTATGGTTGCTACAAAGGAATTTGGATATACTTAGT-TG 844
|||||||||||||||| |||| ||| ||||||||| |||| ||||||| ||| |||| |
Sbjct 747 AAGTTTAGGACCTGCAATGGTTTATAGTTGCTACAGAGGACTTTGGATCTACATAGTCT- 805
Query 845 CGCCAACTCTTGGTGC-GATTGCGGGTGCATGGGTTTATAACACAGTTAGATATACCGAT 903
| |||| | ||||||| | || ||||||| ||||||||||||| ||| |||||||||||
Sbjct 806 CTCCAATTGTTGGTGCAGTTT-CGGGTGCGTGGGTTTATAACATGGTTCGATATACCGAT 864
Query 904 AAACCATTGCGAGAAATCACTAAAAGTGGTTCATTTCTAAAGACCGTGAGAATCGGTAGC 963
|||||||| |||||||| ||||| || ||||| ||| ||||||||||| ||| |||||||
Sbjct 865 AAACCATTACGAGAAATAACTAAGAGCGGTTCGTTTTTAAAGACCGTGCGAAACGGTAGC 924
Query 964 ACTTGATAAG 973
|| | ||||
Sbjct 925 TCTCGTTAAG 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43726985799
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5