BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19038.1
Length=359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946272 jgi|Araly1|946272|scaffold_702501.1 272 1e-72
> Ahg946272 jgi|Araly1|946272|scaffold_702501.1
Length=284
Score = 272 bits (147), Expect = 1e-72
Identities = 243/288 (84%), Gaps = 11/288 (4%)
Strand=Plus/Plus
Query 23 GCTTGCAGCATCGGGACATGAGTAAATCCTTGCAACTCATTGTCACCGTTCTATGTATCT 82
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 4 GCTTGCAATATCGGGACATGAGTAAATCCTTGCAACTCATTGTCACCGTTCTATGTATTT 63
Query 83 TCACCATCCTCGTTCTAGGGGAGATATGTCTGGCAAAGGGACAACCACTTGAGGAAATGG 142
|||||||||||||||||||||||||| | ||||||||||||| ||||| ||| ||| ||
Sbjct 64 TCACCATCCTCGTTCTAGGGGAGATAGGGATGGCAAAGGGACAGCCACTGGAGAAAA-GG 122
Query 143 TAGAGTGTAAGGAGGTCCTATGGCCGGAAGAATGTAAA-TACGACGCATGTGCCTTTGCA 201
| | || | | || ||||| | || ||||||| || | |||| |||||||||||||
Sbjct 123 T-G--TG-ATG-AGATCCTAACACGGGGAGAATGTGAACT-CGACAAATGTGCCTTTGCA 176
Query 202 TGTGCACTCAAGAGACATGGCAAGGGTGGTTGCCTCGAAG--GCCC-CGATTATCGCTCC 258
||||||||||||||||||||||||||||||||| | |||| |||| |||| |||| ||
Sbjct 177 TGTGCACTCAAGAGACATGGCAAGGGTGGTTGCATTGAAGAAGCCCACGATCCTCGCCCC 236
Query 259 GCTTGCATCTGCCAGTATGCTTGCAAACGCTCTTAATACTTGTATTTC 306
|||| | ||| | ||| ||||| ||||||||||||| ||||| |||
Sbjct 237 AATTGCGTTTGCAATTATACTTGCTAACGCTCTTAATATTTGTACTTC 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12782122315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5