BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19040.2
Length=2708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492951 jgi|Araly1|492951|fgenesh2_kg.7__2384__AT4G19040.2 4095 0.0
Ahg494427 jgi|Araly1|494427|fgenesh2_kg.8__243__AT5G45560.1 2351 0.0
> Ahg492951 jgi|Araly1|492951|fgenesh2_kg.7__2384__AT4G19040.2
Length=2650
Score = 4095 bits (2217), Expect = 0.0
Identities = 2487/2608 (95%), Gaps = 55/2608 (2%)
Strand=Plus/Plus
Query 2 TTTTTTCCGGAATTTTGAAAATCTGTGAGCTCATAAATCTTCGCTAATCGCA-GAGACGA 60
|||||| | ||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1 TTTTTT-CAGAATTTTGAAAATCTGTGAGCTCATAAATCTTCGCTAATCGCAGGAGAGGA 59
Query 61 ATCTGCGAAAATTCCAACACCAGATTCCGGCGCCGGAGCGCCGATGAACAATCAGGTCGT 120
| |||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 60 AACTGCGAAAATTCCAACACCAGATT------CC-G-GCGCCGATGAACAATCAGGTCGT 111
Query 121 TTAGTAAAATTCGATGAATCTCCCGCGGAAATAATTAGATTCGATTTCGATTTCCGTGGG 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 TTAGTAAAA-TCGATGAATCTCCCGCGGAAATAATTAGATTCGATTTCGATTTCCGTGGG 170
Query 181 GAAGTTTTGTG-CCATTTGA-TTTGTTTTCGTTCGTCCCCGTTGGAGATTTTTTGTAATT 238
||||||||||| || ||||| |||| ||||||||||| || | ||||||||
Sbjct 171 GAAGTTTTGTGCCCCTTTGATTTTG-TTTCGTTCGTCTCC------G-----TTGTAATT 218
Query 239 TCTGGGGACAGAAACAATGTCTAAGGTAGTGTACGAAGGATGGATGGTTAGGTATGGAAG 298
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 219 TCTGGGGACACCAACAATGTCTAAGGTAGTGTACGAAGGATGGATGGTTAGGTATGGACG 278
Query 299 GAGGAAGATCGGACGATCGTATATTCATATGAGGTATTTTGTGTTGGAGCCTCGTCTTTT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GAGGAAGATCGGACGATCGTATATTCATATGAGGTATTTTGTGTTGGAGCCTCGTCTTTT 338
Query 359 GGCGTATTACAAGAAGAAACCTCAGGATTATCAGGTTCCTATCAAGACCATGTTAATTGA 418
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 339 GGCGTATTACAAGAAGAAACCTCAAGATTATCAGGTTCCTATCAAGACCATGTTAATTGA 398
Query 419 TGGTAACTGCAGAGTTGAGGATCGAGGCTTGAAAACACATCATGGACATATGGTTTACGT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 TGGTAACTGCAGAGTTGAGGATCGAGGCTTGAAAACACATCATGGACATATGGTTTACGT 458
Query 479 TTTGTCTGTCTATAACAAAAAAGAAAAGAGTCATAGAATTACGATGGCAGCGTTCAACAT 538
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GTTGTCTGTCTATAACAAGAAAGAAAAGAGTCATAGAATTACGATGGCAGCGTTCAACAT 518
Query 539 TCAGGAAGCACTAATGTGGAAGGAAAAAATTGAGTCTGTTATAGACCAGCATCAAGAGTC 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCAGGAAGCACTAATGTGGAAGGAAAAAATTGAGTCTGTTATAGACCAGCATCAAGAGTC 578
Query 599 CCAAGTTCCAAATGGTCAGCAGTATGTTTCATTTGAATATAAATCTGGAATGGATACTGG 658
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 579 CCAAGTTCCAAATGGTCAGCAGTATGTTTCCTTTGAATATAAGTCTGGAATGGATACTGG 638
Query 659 AAGGACTGCTTCATCTTCAGACCATGAAAGCCAATCTGCAATTTCCTTTAGATTTAGTGC 718
|||||||||||||||||||||||||| | || | || | |||||||||
Sbjct 639 AAGGACTGCTTCATCTTCAGACCATG--A---AA---G------CC---A-ATTTAGTGC 680
Query 719 GGCAGAGGATGAAGAGGACTCTCGACGTAGCTTAATGAGGAGGACAACTATTGGAAATGG 778
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GCCAGAGGATGAAGAGGACTCTCGACGTAGCTTAATGAGGAGGACAACTATTGGAAATGG 740
Query 779 TCCTCCAGAATCTGTACTTGACTGGACCAAAGAATTTGATGCAGAGTTGGCGAACCAGAA 838
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCCTCCAGAATCTGTGCTTGACTGGACCAAAGAATTTGATGCAGAGTTGGCGAACCAGAA 800
Query 839 TTCCGACAACCAAGCATTTTCCAGGAAACACTGGCGTCTCCTTCAGTGCCAAAATGGTCT 898
|||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 801 TTCCAACAACCAAGCATTTTCCAGAAAATACTGGCGTCTCCTTCAGTGCCAAAATGGTCT 860
Query 899 TCGGATTTTTGAAGAGCTTCTTGAAGTTGATTACCTTCCAAGAAGCTGTAGCAGGGCAAT 958
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 861 TCGGATTTTTGAAGAGCTTCTTGAAGTTGATTACCTTCCAAGGAGCTGTAGCAGGGCAAT 920
Query 959 GAAGGCTGTTGGTGTAGTGGAGGCAACATGTGAGGAAATATTCGAGCTTCTGATGAGCAT 1018
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 921 GAAGGCTGTTGGTGTAGTGGAGGCAACATGTGAGGACATATTCGAGCTTCTGATGAGCAT 980
Query 1019 GGACGGCACTCGTTATGAGTGGGACTGCAGCTTTCAGTTTGGTAGCTTAGTGGAAGAGGT 1078
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 981 GGATGGCACTCGTTATGAGTGGGACTGCAGCTTTCAGTATGGTAGCTTAGTGGAAGAGGT 1040
Query 1079 CGATGGTCACACAGCAGTCCTCTATCACAGACTTCTGCTCGACTGGTTTCCAATGATTGT 1138
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 CGATGGTCACACAGCAGTGCTCTATCACAGACTTCTGCTCGACTGGTTTCCAATGATTGT 1100
Query 1139 GTGGCCTCGCGACCTCTGTTATGTCCGCTATTGGCGCCGTAATGATGATGGGAGTTATGT 1198
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1101 GTGGCCTCGCGACCTGTGTTATGTCCGATATTGGCGCCGTAATGATGATGGGAGTTATGT 1160
Query 1199 TGTGTTGTTCCGTTCTAGGGAGCATGAGAATTGTGGTCCACAACCTGGATGTGTTCGGGC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TGTGTTGTTCCGTTCTAGGGAGCATGAGAATTGTGGTCCACAACCTGGATGTGTTCGGGC 1220
Query 1259 TCATCTTGAGAGTGGAGGATATAATATTTCCCCACTAAAGCCTCGGAATGGGAGGCCTAG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 TCATCTTGAGAGTGGAGGATATAATATTTCCCCACTAAAGCCTCGGAATGGGAGGCCTAG 1280
Query 1319 AACGCAAGTGCAACATCTAATACAAATTGATCTAAAAGGGTGGGGTGCAGGCTATCTTCC 1378
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 AACACAAGTGCAACATCTAATACAAATTGATCTAAAAGGGTGGGGTGCAGGCTATCTTCC 1340
Query 1379 AGCATTTCAACAACATTGTCTTCTTCAAATGCTGAATAGTGTTGCTGGTTTGCGGGAATG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 AGCATTTCAACAACATTGTCTTCTTCAAATGCTGAATAGTGTTGCTGGTTTGCGGGAATG 1400
Query 1439 GTTTTCACAGACAGATGAGAGAGGTGTTCATACCCGGATCCCTGTCATGGTTAATATGGC 1498
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1401 GTTTTCACAGACAGATGAGAGAGGTGTTCCTACTCGGATCCCTGTCATGGTTAATATGGC 1460
Query 1499 ATCATCTTCCTTGAGCTTGACTAAGAGTGGGAAGTCTCTGCATAAGTCTGCCTTTTCTCT 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 ATCATCTTCCTTGAGCTTGACTAAGAGTGGGAAGTCTCTGCATAAGTCTGCCTTTTCTCT 1520
Query 1559 TGATCAAACAAATTCCGTTAACAGAAACTCCT-TGCTTATGGATGAAGACTCGGATGATG 1617
||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1521 TGATCAAACAAATTCTGTTAACAGAAACTC-TGTGCTTATGGATGAAGACTCGGATGATG 1579
Query 1618 ATGATGAATTTCAGATTGCTGAATCAGAACAAGAGCCTGAAACAAGTAAACCAGAGACCG 1677
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1580 ATGATGAATTTCAGATTGCTGAATCAGAACAAGAGCCTGAAACAAGTAAAACAGAGACCG 1639
Query 1678 ATGTCAAGAGACCAGAAGAAGAACCTGCTCACAACATTGATCTGTCATGCTTCTCGGGTA 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 ATGTCAAGAGACCAGAAGAAGAACCTGCTCACAACATTGATCTGTCATGCTTCTCGGGTA 1699
Query 1738 ACCTAAAGCGCAATGAAAACGAAAACGCCCGTAACTGCTGGAGGATTTCTGATGGTAACA 1797
||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||| ||||
Sbjct 1700 ACCTAAATCGCAATGAAAATGAAAACGCTCGTAACTGCTGGAGGACTTCTGATGGGAACA 1759
Query 1798 ACTTCAAAGTTCGGGGCAAGAATTTCGGTCAAGAGAAAAGAAAGATACCTGCTGGCAAGC 1857
|||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct 1760 ACTTCAAAGTTCGGGGCAAGAATTTCAGTGTAGAGAAAAGAAAGATACCTGCTGGGAAGC 1819
Query 1858 ATCTTATGGATCTCGTTGCTGTTGACTGGTTCAAAGACAGTAAAAGAATAGATCATGTTG 1917
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1820 ATCTTATGGATCTCGTTGCTGTTGATTGGTTCAAAGACAGTAAAAGAATAGATCATGTTG 1879
Query 1918 CTAGACGCAAAGGCTGCGCAGCACAAGTTGCTGCAGAAAAAGGTCTATTCTCAATGGTGG 1977
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1880 CTAGACGCAAAGGCTGTGCAGCACAAGTTGCTGCAGAAAAAGGTCTATTCTCGATGGTGG 1939
Query 1978 TAAATGTTCAAGTTCCAGGATCAACACACTACAGTATGGTGTTTTATTTCGTGATGAAAG 2037
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1940 TAAATGTTCAAGTTCCAGGATCAACTCACTACAGTATGGTGTTTTATTTCGTGATGAAAG 1999
Query 2038 AACTAGTACCTGGGTCCCTCTTGCAACGGTTTGTGGATGGTGATGATGAATTCCGAAATA 2097
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2000 AACTCGTACCTGGGTCCCTCTTGCAACGGTTTGTGGATGGTGATGATGAATTCCGAAATA 2059
Query 2098 GTAGGCTAAAGCTTATACCATTAGTTCCTAAGGGCTCATGGATAGTACGGCAAAGTGTGG 2157
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2060 GTAGGCTAAAGCTTATACCATTAGTTCCTAAGGGCTCATGGATAGTACGGCAAAGCGTGG 2119
Query 2158 GAAGCACCCCTTGTCTCCTTGGGAAAGCAGTGGACTGCAACTACATCCGTGGCCCGACAT 2217
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2120 GAAGCACCCCTTGTCTCCTTGGGAAAGCAGTGGACTGCAACTACATTCGTGGCCCGACAT 2179
Query 2218 ACTTAGAAATTGACGTAGATATTGGTTCATCAACCGTTGCAAATGGAGTGCTCGGCCTCG 2277
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2180 ACTTAGAAATTGACGTAGATATTGGTTCATCAACCGTTGCAAATGGAGTTCTCGGCCTTG 2239
Query 2278 TCATTGGCGTAATCACGTCTCTGGTTGTGGAAATGGCTTTCCTTGTACAGGCAAATACAG 2337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2240 TCATTGGCGTAATCACGTCTCTGGTTGTGGAAATGGCTTTCCTTGTACAGGCAAATACAG 2299
Query 2338 CGGAAGAACAGCCAGAGAGGCTTATCGGTGCAGTTCGGGTTTCGCATATTGAGCTCTCTT 2397
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 2300 CGGAAGAACAGCCAGAGAGGCTTATCGGCGCAGTTCGGGTTTCGCATATCGAGCTCTCTT 2359
Query 2398 CGGCTATAGTTCCGAATCTGGAGTCAGAATAAACCCTTGAGAAATTATCATCAAACTTCA 2457
|||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 2360 CGGCTATAGTACCGAATCTGGAGTCAGAATAAACCCTTGATAAATTACCATCAAACTTCA 2419
Query 2458 TATATAAGTTCTGTCACATT-AAGTGTTTGGTGGTTCTTTGGAATAGTCACTGcttcaat 2516
|||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||
Sbjct 2420 TATATAAGTTCTGTCACATTTAAGTGTATGGTGGTTCTTTGGAATATTCACTGCTTCAAT 2479
Query 2517 tctttatcttgcgtctacttttagttttcc-t-t---tat-tt--caatacatctttttc 2568
||||||||||| ||| |||||| |||||| | | | | || |||| ||||||||||
Sbjct 2480 TCTTTATCTTGGGTCGACTTTTCTTTTTCCATATGCCTTTGTTTTCAATGCATCTTTTTC 2539
Query 2569 ttttttttAGTAATGTCAAAAAATTTAT 2596
|| |||| |||||||||||| || |||
Sbjct 2540 ATTATTTT-GTAATGTCAAAATATGTAT 2566
> Ahg494427 jgi|Araly1|494427|fgenesh2_kg.8__243__AT5G45560.1
Length=2195
Score = 2351 bits (1273), Expect = 0.0
Identities = 1901/2199 (86%), Gaps = 63/2199 (3%)
Strand=Plus/Plus
Query 254 AATGTCTAAGGTAGTGTACGAAGGATGGATGGTTAGGTATGGAAGGAGGAAGATCGGACG 313
||||||||| |||||||| |||||||||||||| ||||||||||| || ||||||||| |
Sbjct 3 AATGTCTAAAGTAGTGTATGAAGGATGGATGGTGAGGTATGGAAGAAGAAAGATCGGAAG 62
Query 314 ATCGTATATTCATATGAGGTATTTTGTGTTGGAGCCTCGTCTTTTGGCGTATTACAAGAA 373
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 63 ATCGTATATTCATATGAGGTATTTTGTGTTAGAACCTCGTCTTTTGGCTTATTACAAGAA 122
Query 374 GAAACCTCAGGATTATCAGGTTCCTATCAAGACCATGTTAATTGATGGTAACTGCAGAGT 433
||| ||||| ||| ||||| ||||||| ||||||||| |||||||||| ||||| |||||
Sbjct 123 GAAGCCTCAAGATAATCAGCTTCCTATTAAGACCATGGTAATTGATGGAAACTGTAGAGT 182
Query 434 TGAGGATCGAGGCTTGAAAACACATCATGGACATATGGTTTACGTTTTGTCTGTCTATAA 493
|||||||||||| ||||| ||||||||||||||||||||||| || |||||| | |||||
Sbjct 183 TGAGGATCGAGGATTGAAGACACATCATGGACATATGGTTTATGTGTTGTCTATTTATAA 242
Query 494 CAAAAAAGAAAAG-AGTCATAGAATTACGATGGCAGCGTTCAACATTCAGGAAGCACTAA 552
||| ||||||||| | || ||||| |||||||||||||||||||| |||||||| |||
Sbjct 243 CAAGAAAGAAAAGCA-CCACAGAATCACGATGGCAGCGTTCAACATCCAGGAAGCTTTAA 301
Query 553 TGTGGAAGGAAAAAATTGAGTCTGTTATAGACCAGCATCAAGAGTCCCAAGTTCCAAATG 612
|||||||||| |||||||||| ||| ||||| ||||||||||| |||| |||||||| ||
Sbjct 302 TGTGGAAGGAGAAAATTGAGTGTGTCATAGATCAGCATCAAGACTCCCTAGTTCCAAGTG 361
Query 613 GTCAGCAGTATGTTTCATTTGAATATAAATCTGGAATGGATACTGGAAGGACTGCTTCAT 672
|||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||
Sbjct 362 GTCAGCAGTATGTTTCTTTTGAATATAAGCCTGGGATGGACGCTGGAAGGACTGCTTCAT 421
Query 673 CTTCAGACCATGAAAGCCAATCTGCAATTTCCTTTAGATTTAGTGCGGCAGAGGATGAAG 732
|||||||||||||||||| | | || | || | | || | ||||||||||
Sbjct 422 CTTCAGACCATGAAAGCC---C-G----TT-C---AG---T-GCGCTG--GAGGATGAAG 463
Query 733 AGGACTCTCGACGTAGCT-TAATGAGGAGGACAACTATTGGAAATGGTCCTCCAGAATCT 791
| |||||||||||| | | || ||||||||||||||||||||||||| ||||||||||||
Sbjct 464 ATGACTCTCGACGT-GATCTATTGAGGAGGACAACTATTGGAAATGGCCCTCCAGAATCT 522
Query 792 GTACTTGACTGGACCAAAGAATTTGATGCAGAGTTGGCGAACCAGAATTCCGA-CAACCA 850
||||||||||||| || || |||||||| |||||| | ||||||| |||| | ||||||
Sbjct 523 ATACTTGACTGGACTAAGGAGTTTGATGCTGAGTTGTCAAACCAGAGTTCC-AGCAACCA 581
Query 851 AGCATTTTCCAGGAAACACTGGCGTCTCCTTCAGTGCCAAAATGGTCTTCGGATTTTTGA 910
||||||||| || |||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 582 AGCATTTTCGAGAAAACACCGGCGTCTCCTTCAGTGCCAAAATGGTCTACGGATTTTTGA 641
Query 911 AGAGCTTCTTGAAGTTGATTACCTTCCAAGAAGCTGTAGCAGGGCAATGAAGGCTGTTGG 970
|||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 642 AGAGCTACTTGAAGTTGATTATCTTCCAAGAAGCTGCAGCAGGGCTATGAAGGCTGTTGG 701
Query 971 TGTAGTGGAGGCAACATGTGAGGAAATATTCGAGCTTC-TGATGAGCATGGACGGCACTC 1029
||| |||||||| |||||||| || |||||||||| || ||||||||||||| |||||||
Sbjct 702 TGTTGTGGAGGCCACATGTGAAGAGATATTCGAGC-TCGTGATGAGCATGGATGGCACTC 760
Query 1030 GTTATGAGTGGGACTGCAGCTTTCAGTTTGGTAGCTTAGTGGAAGAGGTCGATGGTCACA 1089
| ||||||||||||||||| ||||||| ||| | |||||||||||||||||||||||||
Sbjct 761 GATATGAGTGGGACTGCAGTTTTCAGTATGGGCGATTAGTGGAAGAGGTCGATGGTCACA 820
Query 1090 CAGCAGTCCTCTATCACAGACTTCTGCTCGACTGGTTTCCAATGATTGTGTGGCCTCGCG 1149
||||| | |||||||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 821 CAGCAATACTCTATCACAGACTTCTGCTCGACTGGTTTCCAATGGTTGTGTGGCCCCGTG 880
Query 1150 ACCTCTGTTATGTCCGCTATTGGCGCCGTAATGATGATGGGAGTTATGTTGTGTTGTTCC 1209
| ||||| ||||| || |||||||| |||||||| ||||| |||||||| || ||||| |
Sbjct 881 ATCTCTGCTATGTACGTTATTGGCGGCGTAATGACGATGGAAGTTATGTGGTATTGTTTC 940
Query 1210 GTTCTAGGGAGCATGAGAATTGTGGTCCACAACCTGGATGTGTTCGGGCTCATCTTGAGA 1269
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 941 GTTCTAGGGAGCATGAAAATTGTGGTCCACAACCTGGATTTGTTCGGGCTCATCTGGAGA 1000
Query 1270 GTGGAGGATAT-AATATTTCCCCACTAAAGCCTCGGAATGGGAGGCCTAGAACGCAAGTG 1328
||||||||| | || || ||||||||||||| |||||||| |||||||| || ||||||
Sbjct 1001 GTGGAGGAT-TCAACATCGCCCCACTAAAGCCCCGGAATGGAAGGCCTAGGACACAAGTG 1059
Query 1329 CAACATCTAATACAAATTGATCTAAAAGGGTGGGGTGCAGGCTATCTTCCAGCATTTCAA 1388
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1060 CAACATCTAATACAAATCGATCTGAAAGGGTGGGGTGCAGGTTATCTTCCAGCATTTCAA 1119
Query 1389 CAACATTGTCTTCTTCAAATGCTGAATAGTGTTGCTGGTTTGCGGGAATGGTTTTCACAG 1448
|||||||||||||||||||||||||| |||||| | |||||||| || ||||| ||||||
Sbjct 1120 CAACATTGTCTTCTTCAAATGCTGAACAGTGTTTCCGGTTTGCGCGAGTGGTTCTCACAG 1179
Query 1449 ACAGATGAGAGAGGTGTTC--ATACCCGGATCCCTGTCATGGTTAATATGGCATCATCTT 1506
|||||||| |||||| | ||| |||||||||| ||||||||||||||||| ||||
Sbjct 1180 ACAGATGATAGAGGTCAACCGATAA--GGATCCCTGTTATGGTTAATATGGCATCTTCTT 1237
Query 1507 CCTTGAGC-TT-GACTAAGAG-TGGGAAGTCTCTGCATAAGTCTGCCTTTTCTCTTGATC 1563
|||| ||| || | ||| || ||| ||| ||| |||||||||| || ||||| ||||||
Sbjct 1238 CCTT-AGCCTTAGG-TAA-AGGTGGAAAGCCTCAGCATAAGTCTTCCCTTTCTATTGATC 1294
Query 1564 AAACAAATTCCGTTAACAGAAACTCCT-TGCTTATGGATGAAGACTCGGATGATGATGAT 1622
|||||||| || | ||||||||| | |||| ||||||||||||||||| || |||||
Sbjct 1295 AAACAAATGGTGTCAGCAGAAACTC-TGTGCTAATGGATGAAGACTCGGACGACGATGAC 1353
Query 1623 GAATTTCAGATTGCTGAATCAGAACAAGAGCCTGAAACAAGTAA--A----C-----CAG 1671
|| |||||||| |||| |||||||||||||||||||| ||||| | | |||
Sbjct 1354 GAGTTTCAGATACCTGATTCAGAACAAGAGCCTGAAACGAGTAAGCAGGAGCAGGAGCAG 1413
Query 1672 -AGACCGATGTCAAGAGACCAGAAGAAGAACCTGCTCACAACATTGATCTGTCATGCTTC 1730
|||| |||| ||||| | |||| | |||||||||| |||||||||||||||||| |||
Sbjct 1414 GAGACTGATGCCAAGAAAACAGA-G--GAACCTGCTCTCAACATTGATCTGTCATGTTTC 1470
Query 1731 TCGGGTAACCTAAAGCG-CA--ATGAAAACGAAAACGCCCGTAACTGCTGGAGGATTTCT 1787
|||||||| || ||| || |||| || ||||| ||||||||||||||||||||||||
Sbjct 1471 TCGGGTAATCT---GCGACACGATGATAATGAAAATGCCCGTAACTGCTGGAGGATTTCT 1527
Query 1788 GATGGTAACAACTTCAAAGTTCGGGGCAAGAATTTCGGT-CAAGAGAAAAGAAAGATACC 1846
||||| |||||||||||||| || ||||||| |||| || || || ||||| ||||| ||
Sbjct 1528 GATGGGAACAACTTCAAAGTCCGTGGCAAGAGTTTCTGTTCA-GATAAAAGGAAGATTCC 1586
Query 1847 TGCTGGCAAGCATCTTATGGATCTCGTTGCTGTTGACTGGTTCAAAGACAGTAAAAGAAT 1906
|||||| |||||||| |||||||| || || || || ||||||||||||| |||||||||
Sbjct 1587 TGCTGGGAAGCATCTAATGGATCTTGTCGCCGTCGATTGGTTCAAAGACACTAAAAGAAT 1646
Query 1907 AGATCATGTTGCTAGACGCAAAGGCTGCGCAGCACAAGTTGCTGCAGAAAAAGGTCTATT 1966
|||||||| | |||||| || ||||| || |||||||||||||| || || ||||| ||
Sbjct 1647 GGATCATGTAGTTAGACGTAAGGGCTGTGCTGCACAAGTTGCTGCGGAGAAGGGTCTTTT 1706
Query 1967 CTCAATGGTGGTAAATGTTCAAGTTCCAGGATCAACACACTACAGTATGGTGTTTTATTT 2026
||||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1707 CTCAACGGTAGTAAATGTTCAAGTTCCTGGATCAACACACTACAGTATGGTATTTTATTT 1766
Query 2027 CGTGATGAAAGAACTAGTACCTGGGTCCCTCTTGCAACGGTTTGTGGATGGTGATGATGA 2086
|||| |||||||| |||||||| |||||||| ||||| ||||| ||||||||||| ||
Sbjct 1767 TGTGACCAAAGAACTTGTACCTGGATCCCTCTTCCAACGTTTTGTTGATGGTGATGACGA 1826
Query 2087 ATTCCGAAATAGTAGGCTAAAGCTTATACCATTAGTTCCTAAGGGCTCATGGATAGTACG 2146
||| |||||||||||||| ||||||||||| ||||| || ||||| |||||||||||| |
Sbjct 1827 ATTTCGAAATAGTAGGCTCAAGCTTATACCTTTAGTCCCCAAGGGTTCATGGATAGTAAG 1886
Query 2147 GCAAAGTGTGGGAAGCACCCCTTGTCTCCTTGGGAAAGCAGTGGACTGCAACTACATCCG 2206
|||||| ||||||||||| || |||||||| |||||||||||||| |||||||| || ||
Sbjct 1887 GCAAAGCGTGGGAAGCACTCCGTGTCTCCTCGGGAAAGCAGTGGATTGCAACTATATACG 1946
Query 2207 TGGCCCGACATACTTAGAAATTGACGTAGATATTGGTTCATCAACCGTTGCAAATGGAGT 2266
|| || |||||||||||||| || |||||||| |||||||| || || |||||||||||
Sbjct 1947 CGGTCCAACATACTTAGAAATAGATGTAGATATCGGTTCATCCACAGTCGCAAATGGAGT 2006
Query 2267 GCTCGGCCTCGTCATTGGCGTAATCACGTCTCTGGTTGTGGAAATGGCTTTCCTTGTACA 2326
|| || || ||||| ||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 2007 TCTTGGTCTTGTCATCGGCGTAATCACATCTTTGGTTGTCGAAATGGCTTTCCTTGTACA 2066
Query 2327 GGCAAATACAGCGGAAGAACAGCCAGAGAGGCTTATCGGTGCAGTTCGGGTTTCGCATAT 2386
||| |||||| | |||||| ||||||| |||||||||| || || ||||||| |||||
Sbjct 2067 GGCGAATACACCAGAAGAATTGCCAGAGCGGCTTATCGGGGCGGTGAGGGTTTCTCATAT 2126
Query 2387 TGAGCTCTCTTCGGCTATAGTTCCGAATCTGGAGTCAGA 2425
||||| || |||||||||||||| |||||||| |||||
Sbjct 2127 AGAGCTATCATCGGCTATAGTTCCTAATCTGGATTCAGA 2165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102158037090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5