BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19050.1
Length=3810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492950 jgi|Araly1|492950|fgenesh2_kg.7__2383__AT4G19050.1 3206 0.0
> Ahg492950 jgi|Araly1|492950|fgenesh2_kg.7__2383__AT4G19050.1
Length=4260
Score = 3206 bits (1736), Expect = 0.0
Identities = 2124/2304 (92%), Gaps = 56/2304 (2%)
Strand=Plus/Plus
Query 499 TAAACCTCCAAGATTTTCTTAA-GGAGTACTCGGCTGTGAAGATTCTAGTCACAAGAAGA 557
|||| ||||||| ||||||||| ||| |||||| ||||||||| ||||||||||||||||
Sbjct 461 TAAATCTCCAAGTTTTTCTTAAGGGA-TACTCGACTGTGAAGACTCTAGTCACAAGAAGA 519
Query 558 GATGAAAGAGAGGAGAAAGAATCCACAACGATCAAAGTCGGTCCGCTTACAGAAAAGGAG 617
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 520 GATGAACGAGAGGAGAAAGAATCGACAACGATCAAAGTCGGTCCGCTTACAGAAAAGGAG 579
Query 618 TCATTGGACTTACTCCACGATGCCGAGGACTTAC-T---T-A-CATCATTTACCTCTGAA 671
||| || | ||||||||||||||||||| ||||| | | | ||||||||||| |||||
Sbjct 580 TCACTGAAATTACTCCACGATGCCGAGGGCTTACTTGCATCAGCATCATTTACCACTGAA 639
Query 672 GATTGGCCTGTTCTGCTAAAGAGACTTTGCGATAACAAAGAGATCAAAGAACCTACTTTG 731
|||||| | |||||||| ||||||||||||||||| ||||||||||||| || |||||
Sbjct 640 GATTGGTCGGTTCTGCTGCAGAGACTTTGCGATAACGGAGAGATCAAAGAATCTTCTTTG 699
Query 732 ATGTCTTGCATTTTAAGCAAGAGCAAGGGCTTACCAGCTGCGATCGTTGTCTTAATCAAG 791
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 700 ATGTCTTGCATTTTGAGCAAGAGCAAGGGCTTACCAGCTGCGATCGTTGTCTTAGTCAAG 759
Query 792 TCTTTAAACAGCATTAAGTCGATGTCTGCGAAGCAGAGGAAGATCTTTAAAGAACTGATT 851
|||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 760 TCTTTAAAAAGCATCAAGTCGTTGTCTGCGAAGCAGAGGAAGATCTTTGAAGAACTGATT 819
Query 852 CTATCTTCCAAGTCATTAGATGAAGCAGCTGCTTCCAAGAACGCT----A-T--A---G- 900
||||| |||||||||||||||| ||| |||||||||||||||||| | | | |
Sbjct 820 CTATCATCCAAGTCATTAGATGCAGCTGCTGCTTCCAAGAACGCTAAAGATTGCAGCCGC 879
Query 901 ----AT-C-G----C-AGCC-G-CTACAATCCTGTCTTGCAATTAAGCTACGAGCTGTTA 947
|| | | | | || | ||||||||||||||||| |||| ||||||||||||||
Sbjct 880 TACAATCCTGTCTACAATCCTGTCTACAATCCTGTCTTGCGATTATGCTACGAGCTGTTA 939
Query 948 AAGCCTGACGAGACGGTCAAACGTCCGGTGATTGCTTGCTTTTGGCATATCTTGGACTTC 1007
|||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 940 AAGCCTGACGAGACTGTCAAACGTCCGGTCATTGCTTGCTTTTGGCATATCCTGGACTTC 999
Query 1008 TACAAGTACTCTGGATGCGCTTACTACCGTGACCTAATAGTGCATTGGATGCTTGAAGGG 1067
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1000 TACAAGTACTCTGGATGCGCTTACTACCGCGACCTAATCGTGCATTGGATGCTTGAAGGG 1059
Query 1068 TATTTTGATCCGGTTAAGTCAGTTGACAAAGCTTACCAAGAAGGACATTCCATTTTAATG 1127
|||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 1060 TATTTTGATCCGGTGAAGTCGGTTGAGAAAGCTTACCAGGAAGGACATTCCATTTTAATG 1119
Query 1128 GACTTTATGAACAGAGGAATCTTGAAAATACAAGAAGACAACATGGTGGTTCCAGAGTTC 1187
||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1120 GACTTTATGGACAGAGGAATCTTGAAGATACAAGAAGACAACATGGTAGTTCCAGAGTTT 1179
Query 1188 TCCATGAGCAACCTATTAGATCTTCAAGATTGTGGATTCTTTGGAAGATCTTCTCTTGGA 1247
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 TCTATGAGCAATCTATTAGATCTTCAAGATTGTGGATTCTTTGGAAGATCTTCTCTTGGA 1239
Query 1248 TTTGACAGAGTTTACGGTGGAGACAAGAGAAAGGGGCTAGGGAAAATCATCTTGATCGAT 1307
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1240 TTTGACAGAGTTTACGGTGGAGACAAGAGAAAGGGGCTTGGGAAAATCATCTTGATCGAC 1299
Query 1308 GATATGATACAGACAATTCAATCGAAGAAGAAGAATATCACGACGATTATCGCTAGCGGA 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 GATATGATACAGACAATTCAATCGAAGAAGAAGAATATCACGACGATTATCGCTAGCGGA 1359
Query 1368 AACCGTTTACGTAGAGAGGTTCATGGGAAGTTCTTTGAGAAACCAGAGATGCAAGATCTT 1427
|| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1360 AATCGTTTACGCAGAGAGGTTCCTGGGAAGTTCTTTGAGAAACCAGAGATGCAAGATCTT 1419
Query 1428 GAAGTTGTAGTCCTCTTTGAGCCAACGTTCCATGAACTTGTTCTGTCTTTATCTAAGCTA 1487
|||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1420 GAAGTTGTTGTCCTCTTTGAGCCAACGTTCCACGAACTTGTTCAGTCTTTATCTAAGCTA 1479
Query 1488 AAGAAACTCCGAGTACTTGTTATCAGAGACTGTGATCTAATCGATAACATCGATAAGCTC 1547
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1480 AAGAAACTCCGAGTACTCGTGATCAGAGACTGCGATCTAATCGATAACATCGATAAGCTC 1539
Query 1548 A-GTGGTCTTCAAGGCCTACATGTTCTTGAAGTCTCTGGTGCTAGCTCTCTAGTTAACAT 1606
| | |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1540 ACG-GGTCTTGAAGGCCTACATGTTCTTGAAGTCTCTGGTGCTAGTTCTCTAGTTAACAT 1598
Query 1607 CCCTGATGATTTCTTCAAGAACATGACTCAGCTTCAAAGCCTTAATCTTTCGGGACTTGC 1666
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 1599 CCCTGATGATTTCTTCAAGAACATGACTCAGCTTCAAAGTATTAACCTTTCGGGACTAGC 1658
Query 1667 AATCAAATCTTCGCCTTCCACAATCGAAAAGCTAAGCATGCTTCGTTGCTTCATCCTAAG 1726
|||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1659 AATCAAATCTTCGCCTTCTACAATCGAAAATCTAAGCATGCTCCGTTGCTTCATCCTAAG 1718
Query 1727 -GCACTGCTCTGAGCTACAAGATCTGCCTAACTTCATTGTGGAAACAAGAAAACTTGAAG 1785
| |||||||||||||||||||||||||||| |||| ||||||||||| |||||| ||||
Sbjct 1719 AG-ACTGCTCTGAGCTACAAGATCTGCCTAATTTCAATGTGGAAACAAAAAAACTGGAAG 1777
Query 1786 TTATTGACATTCACGGAGCTAGGAAACTTGAGTCTTACTTTGATAGAGTTAAAGATTGGA 1845
|||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1778 TTATCGACATTCACGGAGCTCGGAAACTTGAGTCTTACTTCGATAGAGTTAAAGATTGGA 1837
Query 1846 AGGACTATAAAGGCAAGAACAAGAACTTTGCTCAGCTTCAGCTGCTTGAACACCTAGACT 1905
|||||||||||||||||||||||||||| ||||| ||||||| ||| |||||| ||||||
Sbjct 1838 AGGACTATAAAGGCAAGAACAAGAACTTCGCTCATCTTCAGCAGCTCGAACACTTAGACT 1897
Query 1906 TCTCAGAGACTAAAATCATCCGTCTGCCGATATTTCATCTCAAAGACTCTACTAACGATT 1965
|||| |||||||||||||||||||| |||||||||||| | || | | |||||
Sbjct 1898 TCTCGGAGACTAAAATCATCCGTCTACCGATATTTCAT---A----CT--A--A-CGATT 1945
Query 1966 TCAGTACTATGCCAATCTTGACCCGGCTCTTGCTGAGAAACTGTACAAGGCTTAAGAGAT 2025
|||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1946 TCAGCACTATGCCAATCTTGACCCGGCTCTTACTGCGAAACTGTACAAGGCTTAAGAGAT 2005
Query 2026 TGCCACAGCTTAGGCCTTTGACTAATCTTCAGATTCTTGATGCATGTGGTGCTACA-GAC 2084
||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||| | |
Sbjct 2006 TGCCACAGCTTAGGCATTTGACTAAACTTCAGGTTCTTGATGCATGTGGTGCTACAAG-C 2064
Query 2085 TTAGTGGAGATGCTTGAAGTGTGTTTAGAGGAGAAGAAAGAGCTTAGGATCCTCGATATG 2144
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 2065 TTAGTGGAGATGCTTGAAGTGTGTTTAGAGGAGAAGGAAGAGCTTAGGATCCTTGATATT 2124
Query 2145 TCAAAGACAAGTCTTCCCGAGTTAGCCGACACGATTGCTGATGTTGTCAATCTCAATAAG 2204
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2125 TCAAAGACAAGTCTTCCCGAGTTAGCCGACACGATCGCTGATGTTGTCAATCTCAATAAG 2184
Query 2205 CTTCTGTTAAGGAATTGCTCACTGATTGAAGAGCTTCCAAGCATTGAGAAACTGACACAC 2264
||||| ||||||| ||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 2185 CTTCTAATAAGGAACTGCTCCCAGATTGAAGAGCTTCCAAGCATTGAGAAACTTACACAC 2244
Query 2265 CTTGAAGTTTTCGACGTTTCTGGTTGCATTAAGTTGAAGAATATCAATGGATCCTTTGGG 2324
||||| |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||
Sbjct 2245 CTTGAGGTTTTCGACGTTTCTGGTTGCAATAAGTTGAAGAAGATCGATGGATCCTTTGGG 2304
Query 2325 GAGATGTCTTACCTCCATGAAGTGAATCTTTCAGAAACTAATCTTAG-TGAGTTACCTGA 2383
|||||||||||||||| ||||||||| |||||||||| |||||| | |||| |||||||
Sbjct 2305 AAGATGTCTTACCTCCACGAAGTGAATATTTCAGAAACGAATCTT-GCTGAGCTACCTGA 2363
Query 2384 CAAAATCTCAGAGCTATCTAACCTTAAGGAGCTCATCATAAGAAAATGTTCCAAGCTAAA 2443
|||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||
Sbjct 2364 CAAAATCTCAGAGCTATCTAACCTCAAGGAGCTCATCATAAGAAACTGTACCAAGCTAAA 2423
Query 2444 -GACTCTTCCAAACCTTGAGAAGCTAACAAATCTTGAGATCTTCGATGTTTCGGGCTGCA 2502
| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2424 AG-CTCTTCCAAATCTTGAGAAGCTAACACATCTTGAGATCTTCGATGTTTCGGGCAGCA 2482
Query 2503 CCGAGTTGGAAACAATCGAGGGATCATTCGAGAATCTGTCTTGCCTCCACAAAGTGAATC 2562
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2483 CCGAGTTGGAAACAATCGAGGGATCATTCGAGAATCTGTCATGCCTCCACAAAGTGAATC 2542
Query 2563 TTTCGGAAACTAATCT-TGGTGAGTTACCTAACAAAATCTCAGAGCTATCTAACCTCAAA 2621
|||||| ||||||||| || ||||||||||||||||||||| |||||||||||||| ||
Sbjct 2543 TTTCGGGAACTAATCTCTG-TGAGTTACCTAACAAAATCTCCGAGCTATCTAACCTTGAA 2601
Query 2622 GAGCTCATCCTAAGAAACTGTTCTAAGCTAAAGGCTCTTCCAAATCTTGAGAAGCTAACA 2681
||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2602 GAGCTCATCGTAAGAAACTGTACCAAGCTAAAGGCTCTTCCAAATCTTGAGAAGCTAACA 2661
Query 2682 CATCTAGTGATCTTCGATGTTTCGGGATGCACCAATCTGGATAAAATCGAGGAATCATTC 2741
||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 2662 CATCTAGAGATCTTCGATGTTTCGGGATGCACCGATCTGGATAAAATCGAGGGATCATTC 2721
Query 2742 GAGAGTATGTCTTACCTTTGCGAG 2765
|||| ||||||||||||| |||||
Sbjct 2722 GAGAATATGTCTTACCTTCGCGAG 2745
Score = 1218 bits (659), Expect = 0.0
Identities = 810/881 (92%), Gaps = 18/881 (2%)
Strand=Plus/Plus
Query 2815 AGAGCATCCTCTGTTCTTCAAAACGTATTGTTCTCGCGGATTCGAGTTGTATAGAGCGAG 2874
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 2744 AGAGCATCCTCTGTTCTTCAAAACGTATTGTGCTCGCGGATTCGAGTTGTTTAGAGCGAG 2803
Query 2875 ACCAGTGGAGCCAAATAAAAGAGTGTTTAACAAGT-AAGTCAGAGGGCTCTAGCTTCTCT 2933
||||||||||||||||||| |||||||||| || | ||||||||||||||||||||||||
Sbjct 2804 ACCAGTGGAGCCAAATAAAGGAGTGTTTAA-AAATGAAGTCAGAGGGCTCTAGCTTCTCT 2862
Query 2934 AATGTAGGGGAAAAAACCCGCGAGAAACTTCTTTATCACGGCAATAGATACAGAGTTATT 2993
||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 2863 AATGTAGCAGAGAAAACCCGCGAGAAACTTCTTTATCACGGAAATAGATACAGAGTTCTT 2922
Query 2994 GATCCTGAAGTTCCTTTGAATATCGATATTGTTGACATCAAAAGATCCACTGATCTTAAA 3053
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 2923 GATCCTGAAGTTCCTTTGAATATCGATATCGTTGACATCAAAAGAGCCACTGATCTTAAA 2982
Query 3054 ACAGAGTATATAGCCAAAGCAGAGTATGTCTCTATAGCAGAGAATGGATCCAAAAGCGTA 3113
||||||| | | ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 2983 ACAGAGTCTTTCGCCAATGCAGAGTATGTCTCTATAGCAGAGAATGGATCGAAAAGCGTA 3042
Query 3114 TCTTCTCTCTTCGACGAGTTG-CAGATG-GCATCGGTAAAAGGTTGTTGGGTAGAGAGGT 3171
|| || ||||||||||| || |||||| | ||||||||||||||| |||||||||||||
Sbjct 3043 TCCTCGATCTTCGACGAG-TGTCAGATGAG-ATCGGTAAAAGGTTGCTGGGTAGAGAGGT 3100
Query 3172 GCAAGAACATGGATGTTCTCTTCGAATCAGATGAACAACTAGAGAAAGAGAAATCATCAT 3231
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3101 GCAAGAACATGGATGTTCTCTTCGAATCAGATGAACAACAAGAGAAAGAGAAATCATCAT 3160
Query 3232 C---ACCATCATTGCAGACTCTTTGGATCTCAAATCTTCCATTGCTAACAAGCTTATACA 3288
| | |||| ||| ||| |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 3161 CATTATCATCCTTGGAGAATCTTTGGATCTCAAATCTTCCATTACTAACAAGCTTATGCA 3220
Query 3289 GTAGTAAAGGAGGATTCATTTTCAAGAACCTTAAGAAGCTAAGCGTAGATTGTTGTCCAA 3348
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 3221 GTAGCAAAGGAGGATTCATCTTCAAGAACCTAAAGAAGCTAAGCGTAGATTGTTGTCCAA 3280
Query 3349 GCATCAAATGGCTATTCCCGGAGATTCCTGATAACCTTGAGATTCTTCGTGTGAAGTTCT 3408
| |||| || ||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3281 GGATCACATCGCTCTTCCCTGAGATTCCTGATAACCTTGAGATTCTTCGTGTGAAGTTCT 3340
Query 3409 GTGATAAGTTGGAGAGATTGTTTGAAGTAAAAGCAGGAGAATTATCGAAGCTTCGTAAGC 3468
|||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3341 GTGATACGTTGAAGAGATTGTTTGAAGTAGAAGCAGGAGAATTATCGAAGCTTCGTAAGC 3400
Query 3469 TTCACCTTCTTGATTTGCCTGTTTTATCAGTACTTGGAGCTAATTTCCCGAATCTGGAGA 3528
|||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 3401 TTCAACTTCTTGATTTGCCTGTCTTATCGGTGCTTGGAGCTAATTTCCCGAATCTGGAGA 3460
Query 3529 AATGCACAATTGAGAAATGTCCGAAATTGAAAGCTAGAGAAGATGAACCGAGGATTGGAG 3588
|||||||||||||||||||||||||||||||||||||| |||||||| | | ||||
Sbjct 3461 AATGCACAATTGAGAAATGTCCGAAATTGAAAGCTAGACAAGATGAAGTAACAA--GGAG 3518
Query 3589 CAAGGATTACAGATGAAATTTCAGAGGATCA--A-CCTCACAAGAATACTATTGGGCCTG 3645
| | |||||||||||||||||||||||| | |||||||| || |||||||||||||
Sbjct 3519 ---G-ACTACAGATGAAATTTCAGAGGATCATCAGCCTCACAACAAGACTATTGGGCCTG 3574
Query 3646 AAACCCAAACTCCTACCCAGCCCACAAAAGCTACAGACACA 3686
|||||||||||||||| ||||||||||||| ||||||||||
Sbjct 3575 AAACCCAAACTCCTACTCAGCCCACAAAAGATACAGACACA 3615
Score = 527 bits (285), Expect = 2e-148
Identities = 370/410 (90%), Gaps = 9/410 (2%)
Strand=Plus/Plus
Query 90 GAGAAGCAAGATCAAACAAGCAGAGAAGAGATTCTGAAGAAGATAATGGATTCATTGGGA 149
|||||||||||||||| | ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 16 GAGAAGCAAGATCAAATAGGCAGAGACGAGATTCTCAAGAAGATAATGGATTCATTGGGA 75
Query 150 CAAGACGGTGTACCTTCAAAAACCGTCCTCGTTGGTGAAGCTGGTATAGGGAAGACATGG 209
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 76 CAAGACGGTGTATCTTCAAAAACTGTCCTCGTTGGTGAAGCTGGTATAGGGAAGACATGG 135
Query 210 CTTGCAAAAGAAGTCAGC-CAACGTGTTACTCAAGAAAAG-TACAATGTCCTCTGGTTAC 267
||||||||| |||| || ||| | | || || |||||||||||||||||||
Sbjct 136 CTTGCAAAACAAGT-TGCTCAA-G-AAAAGTC--TTCTAGTTACAATGTCCTCTGGTTAC 190
Query 268 ACCTGAACAAAAAGATTGAAGACGAGAAGTCGCTTTACGAGATTCTAGCTGCTCAGTTGT 327
| || ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 191 ATCTAAACAAAAGGATTGAAGACGAAAAGTCGCTTTACGAGAATCTAGCTGCTCAGTTGT 250
Query 328 CGATAATTTACGAGTTTGAAGAAGGCGAAGAACCTGATGAGCTTGATTATCCATTGGAGA 387
||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 251 CGATAATTTACGAGTTTGAAGAAGGCGAAGAACCTGAGGAGTTTGATTATTCATTGGAGA 310
Query 388 GCTTGAAAGAGAAGATTAAAGA-AGAGATGATCAAACACAAGAAGGATAATCTTCTGTTG 446
|||||||||||||||||| ||| | |||||||||| |||||||||||||||||||||||
Sbjct 311 GCTTGAAAGAGAAGATTACAGACTG-GATGATCAAAAACAAGAAGGATAATCTTCTGTTG 369
Query 447 ATTTTGGATGATGAAGGAAGTATGACAACTGAAGAAGATGTGATGCAAGA 496
||||||||||||||||||||||||||||||||| || |||| ||| ||||
Sbjct 370 ATTTTGGATGATGAAGGAAGTATGACAACTGAAAAACATGTAATGGAAGA 419
Score = 298 bits (161), Expect = 2e-79
Identities = 287/347 (83%), Gaps = 12/347 (3%)
Strand=Plus/Plus
Query 2448 CTTCCAAACCTTGAGAAGCTAACAAATCTTGAGATCTTCGATGTTTCGGGCTGCACCGAG 2507
||||||| | ||||||| || ||| | |||||| | ||||| ||||| || |||| ||
Sbjct 2218 CTTCCAAGCATTGAGAAACTTACACACCTTGAGGTTTTCGACGTTTCTGGTTGCAATAAG 2277
Query 2508 TTGGAA-ACA-ATCGAGGGATCATTCGAGAATCTGTCTTGCCTCCACAAAGTGAATCTTT 2565
|| ||| | | ||||| ||||| || | ||| |||||| ||||||| |||||||| |||
Sbjct 2278 TT-GAAGA-AGATCGATGGATCCTTTGGGAAGATGTCTTACCTCCACGAAGTGAATATTT 2335
Query 2566 CGGAAACTAATCTTGGTGAGTTACCTAACAAAATCTCAGAGCTATCTAACCTCAAAGAGC 2625
| ||||| ||||||| |||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 2336 CAGAAACGAATCTTGCTGAGCTACCTGACAAAATCTCAGAGCTATCTAACCTCAAGGAGC 2395
Query 2626 TCATCCTAAGAAACTGTTCTAAGCTAAAGGCTCTTCCAAATCTTGAGAAGCTAACACATC 2685
||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 2396 TCATCATAAGAAACTGTACCAAGCTAAAAGCTCTTCCAAATCTTGAGAAGCTAACACATC 2455
Query 2686 TAGTGATCTTCGATGTTTCGGG-ATGCACCAA-TCTGGATAA-AATCGAGGAATCATTCG 2742
| | |||||||||||||||||| | ||||| | | |||| || |||||||| ||||||||
Sbjct 2456 TTGAGATCTTCGATGTTTCGGGCA-GCACCGAGT-TGGA-AACAATCGAGGGATCATTCG 2512
Query 2743 AGAGTATGTCTTACCTTTGCGAGGTTAATCTCTCTGGGA-CTAATCT 2788
||| | |||| | ||| | | || ||||| || |||| |||||||
Sbjct 2513 AGAATCTGTCATGCCTCCACAAAGTGAATCTTTC-GGGAACTAATCT 2558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143971798659
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5