BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19060.1
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492949 jgi|Araly1|492949|fgenesh2_kg.7__2382__AT4G19060.1 1748 0.0
> Ahg492949 jgi|Araly1|492949|fgenesh2_kg.7__2382__AT4G19060.1
Length=1245
Score = 1748 bits (946), Expect = 0.0
Identities = 1169/1269 (92%), Gaps = 46/1269 (4%)
Strand=Plus/Plus
Query 1 GCAGACTTTGAAACACAGAAATTCTTCCCATTGTAGTGtttttttCTCAGAAACACAAGA 60
|||||||||||||| ||||||||| ||||||| |||| ||||||||| ||||||||||||
Sbjct 1 GCAGACTTTGAAACCCAGAAATTCCTCCCATTTTAGT-TTTTTTTCTTAGAAACACAAGA 59
Query 61 AGAGCTTATGGATA-TTGCTAAGAAGTTCATATCTGAAATTGATGACAAGCTCGAGTCTA 119
|||||||||||| | ||||| ||||||| ||||||||||||||||| ||||||||| |||
Sbjct 60 AGAGCTTATGGA-ACTTGCTGAGAAGTTTATATCTGAAATTGATGAGAAGCTCGAGCCTA 118
Query 120 AATCAGAATTTGATAAAGAGCTCGAGAAAATCAAGTCTTCCTTCAATGAAGAATATGAGA 179
|||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AATCTGAAATTGATAAAGAACTCGAGAAAATCAAGTCTTCCTTCAATGAAGAATATGAGA 178
Query 180 AATGGTCGTCTGGAAAACAGAGGGGATCTTCCTCTAAGCATGGAAACCAGTCCACACATG 239
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 179 AATGGTCGTGTGGAAAACAGAGTGGATCTTCCTCTAAGCATGGAAACCAGTCCACAGATG 238
Query 240 GTGATTCATCACCAACTCGTAACAGCAGCGGCAGCAGTAAAAAAGGGCGGCCTAAGGCGA 299
| |||||||| |||||||| || | |||||||||||||||||||||||||||||
Sbjct 239 GCGATTCATCGCCAACTCG---CA--A----CAGCAGTAAAAAAGGGCGGCCTAAGGCGA 289
Query 300 ACCGTGTGGAGACAAGCTCTGAGCTTCCGGATCACCTCATTCGTGGTTTCATTAACGAGA 359
||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||||||
Sbjct 290 ACCGTGTGGAGACGAGCTCTGAGCTTCCGGATCACGTCATTCATGGTTTCATAAACGAGA 349
Query 360 AACTGTTCTTGAAGAACTTCTTGCTGAAGCAAAAGGAATCCGAAGAGTTCAAGACTCTAG 419
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 350 AACTGTTCTTGAAGAACTTCTTTCTGAAGCAAAAGGAATCCGAAGAGTTCAAGACTCGAG 409
Query 420 CAATTGTGGGGAAATACGGAGTTGGGAAA-ACGACATTGTGTCAGGCTGTGTTCAACGAC 478
||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 410 CAATTGTGGGGAAATACGGAGTT-GGAAAGACGACATTGTGTCAGGATGTGTTCAACGAC 468
Query 479 GAAGATGTTAAGCAAGTTTATTTCCCGAGGATATGGGTTTCTATGTACAGCAAAGAAACA 538
|||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GAAGATGTGAAACAAGTCTATTTCCCGAGGATATGGGTTTCTATGTACAGCAAAGAAAC- 527
Query 539 AAAGAAGACGAAGATCCCAAGATAGATGTTGTGAAGAGGATCTTGAGATCCCTTGGAGTT 598
| | ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 528 -----A-A--AAGATCCCAAGATAGATGTTGTGAAGAGGATCTTGAGATTACTTGGAGTT 579
Query 599 GAAGATGAGATGTTTAAACACATCAAAACagaagcagaagaagagaagagtatcaaagat 658
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 580 GAAGATGAGATGTTTGAACACATCAAAACAGAAGCAGAAGAAGAGAAGAGAATCAAAGAT 639
Query 659 gaagctggggaaagagaggaagagacggtcaaagaaaagGAGCTTGCTCGATTATTGTAT 718
|||||||||||| ||| ||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 640 GAAGCTGGGGAAGGAGGGGAAGAGACAGTCAAACAAAAGGAGCTCGCTCGATTATTGTAT 699
Query 719 GCTCTTCACTTGAATCTGATTGGGAAGAAGTATCTGATAGTGTTGGATGATGTTTGGGAA 778
|||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 700 GCTCTTCACTTGCATCTGATTGGGAAGAAGTATCTGATCGTGTTGGACGATGTTTGGGAA 759
Query 779 GACAACGAGTGGGATCAAAGGCTCGATGATGAGAAGAAGCAACAGGAAAAATCACATCTT 838
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 760 GACAACAAGTGGGATCAAAGGCTCGATGAT---AAGAAGCAGCAGGAAAAATCACATCTT 816
Query 839 TCTTGTGGGTTTCCTAAAGGGTTTGGTGGGAAAGTGATTATGACTAGCAGAGACGAGAGA 898
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 817 TCTTGTGGGTTTCCTAAAGGGTTTGGTGGGAGAGTGATTATGACTAGCAGAGACGAGAGA 876
Query 899 TTGGCGAAGGCGATAGTCGGAGAAGAAGAGAATCTGCAGCGTTTGTTTCCAAGATCCGAT 958
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 877 TTGGCGAAGGAGATAGTCGGAGAAGAAGAGAATCTGCAGCGTTTGTTTCCGAGATCCGAT 936
Query 959 GCAGAGAGCTTGTGGGAGATTTACATTGATGCAGTACCCACCAAGGTGGACGATGCAGCA 1018
|||||||| || ||| | ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 937 GCAGAGAGTTTATGGAACATTTACATTGAAGCAGTACCCACCAAGGTGGACGATGCAACA 996
Query 1019 GCCACGAATTTGGGCGATGCAG----------T-----AGCCACAAATGCGGGCGATGCA 1063
||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 997 GCCACGAATGCGGGCGATGCAGCAGCCACAAATGCGGCAGCCACAAATGCGGGCGATGCA 1056
Query 1064 GTAGCCCCGAAAGTGAATCCGAGGTATCCGGGAAGATACAAACAAGAGCTTATGGATAAG 1123
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 GTAGACCCAAAAGTGAATCCGAGGTATCCGGGAAGATACAAACAAGAGCTTATGGATAAG 1116
Query 1124 TCTTGTGGTATTCCTTTGGCTGCTCGAATGCTGGCGAAGATTGAGCCTGTGAAAGTGGAT 1183
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1117 TCTTGTGGTATTCCTTTGGCTGCTCGCATGCTGGCGAAGATTGAGCCTGTGAAAGTGGAT 1176
Query 1184 GAAATTGGAAACATAGATAGGAAGCA--G--A-GCTTCTAACTTCTAACGCAATATCTAT 1238
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 1177 GAAATTGGAAACATAGATAGGAAGCAAAGCTAAGCTTCTAACTTCTAACGCAATATCTAT 1236
Query 1239 GTATTTACT 1247
|||||||||
Sbjct 1237 GTATTTACT 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51764642955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5