BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19080.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946268 jgi|Araly1|946268|scaffold_702497.1 880 0.0
> Ahg946268 jgi|Araly1|946268|scaffold_702497.1
Length=3021
Score = 880 bits (476), Expect = 0.0
Identities = 784/928 (84%), Gaps = 39/928 (4%)
Strand=Plus/Plus
Query 66 TAGATTCTGCTTAGGAATTCCGT-TGATCAACTATCTCCTAGAATTCTTCAGCATCTCAG 124
||||||||| || || ||||| | |||| ||||||||| | ||||||||| | ||| |||
Sbjct 1541 TAGATTCTGGTTTGGGATTCC-TCTGATTAACTATCTCTTGGAATTCTTCGGTATCCCAG 1599
Query 125 ATCAGGTAAATGAGATAGTGTTCACATCCCGCACACGCCTCACCAAAGAGCTCTGGGAAT 184
||||| |||| |||||||| |||||||||| ||||||||||| |||||||| |||||||
Sbjct 1600 ATCAGCTAAACGAGATAGTATTCACATCCCATACACGCCTCACGAAAGAGCTTTGGGAAT 1659
Query 185 TCATATTTGAAGAGGTCAAGCATAGATCGCTCTTAGTTGTTGGATCGGAAAGTGCCAGCC 244
|||||||||| ||||| |||| |||||| |||||||||||||| || ||||||| ||||
Sbjct 1660 TCATATTTGAGGAGGTTAAGCGTAGATCCCTCTTAGTTGTTGGCTCAGAAAGTGACAGCT 1719
Query 245 ATATATATTCGGCTAGAGGCGACTGGATTCTGCGCGATATGCA-AATCGAGGATTATT-A 302
| ||||||||||||||||| |||||||||||| | |||||| | | | | ||| |||| |
Sbjct 1720 ACATATATTCGGCTAGAGGTGACTGGATTCTGAGGGATATG-AGAGTAGGGGA-TATTCA 1777
Query 303 TGAGAAACTCCTGCCA-TATGTCACTGAAGTGGAGTATGATCAGGGCATTCTGGTGTGGC 361
|||||||| ||| || ||||| ||||||||||| || |||||| |||||||||||||||
Sbjct 1778 CGAGAAACTGCTG-CAGTATGTTACTGAAGTGGATTACGATCAGAGCATTCTGGTGTGGC 1836
Query 362 ACGTTGCAACTGAGCTCTTACACCAAACAGAAGTAGACAATGCAGCAAGAAATGTCAGAA 421
|||| || || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1837 ACGTCGCCACGGAGCTCTTACACCAAACACAAGTAGACAATGCAGCAAGAAATGTCAGAT 1896
Query 422 GCAAAGAGTACAGCAAAACCATT-TCAGACTACATGATGTACCTCTTAGTCGCACAATCC 480
|||| |||| |||||||||| || |||||||||||||||||||| ||| ||| || ||
Sbjct 1897 GCAACGAGTTCAGCAAAACC-TTATCAGACTACATGATGTACCTGTTAATCGTGCAG-CC 1954
Query 481 -TCTCTTATGTCAACAGTTGCAGGAATTGATAAGATAAAATTCAAAGACGCTATAGCAGA 539
||| | |||||||||||||| ||||| | ||| ||| ||||| ||| || ||||||||
Sbjct 1955 GTCTATGATGTCAACAGTTGCGGGAATCAACAAGTTAAGATTCAGAGAGGCGATAGCAGA 2014
Query 540 AGCCAAAAACTCTAAAGAGGCTAAAAAGCTGTTTCAGAAGATGCATGTTGAGGGTTCAAG 599
||||||||||| | |||||||||||| ||||||||||| || ||||||||||| ||| ||
Sbjct 2015 AGCCAAAAACTTTCAAGAGGCTAAAACGCTGTTTCAGAGGACGCATGTTGAGGATTCGAG 2074
Query 600 AGATGCAAAGAAGGCCTGTGCAGCAATTGTGGATTCCTTTACGGAATTTGAGCTAGGGA- 658
||||||||||||||||||| || ||| ||||||||| || | || | |||| | | |
Sbjct 2075 AGATGCAAAGAAGGCCTGTAAAGAAATAATGGATTCCTATAAGAAAGTAGAGCGAAG-AT 2133
Query 659 ATGGGAACGCCAGACGG-TATCAAAGCAAGTCCATGTT-GTTCCAAGCGAGCATGCTAGC 716
||| |||| ||| | || || ||||||||||| || | || |||||||| || |||||
Sbjct 2134 ATGAGAACACCAAA-GGATACCAAAGCAAGTCTGTGCTAGT-CCAAGCGAATATACTAGC 2191
Query 717 GAAGGAGCTTCTGCATATAACAAATGAAAGAGGCAATGATGCAATGTGGAAAGTAGTGAG 776
||||||||||| || ||| | || | ||| || ||||| ||||||||||
Sbjct 2192 GAAGGAGCTTCAGCGGATAG-A--TG---G------TGA--CA-TGTGGGAAGTAGTGAG 2236
Query 777 CAAAGTGTGGGTGGAGATGCTTTGCTACGCAGCAACTCACTGTGATTCTAAACAACATGC 836
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2237 CAAAGTGTGGGTGGAGATGCTTTGCTATGCAGCAACTCACTGTGATTCTAAACAACATGC 2296
Query 837 AGCTCAACTCAACAAAGGTGGTGAACTGATCAACTTTGTTTGGCTAT-TGATGGCTCATT 895
|||||| |||||||||||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 2297 AGCTCAGCTCAACAAAGGTGGTGAATTGATCAACTTTGTTTGGCT-TCTGATGGCTCATT 2355
Query 896 TCGGACTCGGAGAGCAATTCAGGACCACCAAGGAAGATTCTAGAGCCACACTGATTCTT- 954
|||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct 2356 TCGGACTCGGAGAGCAATTCCTGACCACCAAGGAAGATTCTAGAGCCAGACTGGTTCTGG 2415
Query 955 ACCAAAACAAGC-ACCTCTTGCCTTGTG 981
|| ||| | | | || ||||||||||||
Sbjct 2416 AC-AAAGCCA-CTACTTCTTGCCTTGTG 2441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5