BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19090.1
Length=2256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890262 jgi|Araly1|890262|Al_scaffold_0007_2248 863 0.0
> Ahg890262 jgi|Araly1|890262|Al_scaffold_0007_2248
Length=2367
Score = 863 bits (467), Expect = 0.0
Identities = 625/702 (89%), Gaps = 8/702 (1%)
Strand=Plus/Plus
Query 1557 aaaTTCCCAGATTCTATACAGCCTGGAGAATACCACAACAAAAT-CATCGGCTAGGAGAG 1615
||| ||||||| ||||||||||||||||||||||| |||||||| || |||| |||||||
Sbjct 1672 AAA-TCCCAGAATCTATACAGCCTGGAGAATACCAAAACAAAATCCA-CGGCCAGGAGAG 1729
Query 1616 ATTGGGCATCTAGCCATACCCAGATTCAAATAGCAGACCATGATATGCTGCTACATTACA 1675
||||||||| ||| |||||||||||||||||||||| |||| ||||| | |||||||
Sbjct 1730 GTTGGGCATCAAGCGATACCCAGATTCAAATAGCAGATAATGAAATGCTATTGCATTACA 1789
Query 1676 TAACAGATGTTGATTATGAACACAGTCTTTTGATTTGGCACATCGCCACAGAACTCTGTT 1735
||| ||||||||||||||| || |||||||||||||||||||| ||||| || || ||||
Sbjct 1790 TAAGAGATGTTGATTATGACCATAGTCTTTTGATTTGGCACATTGCCACCGAGCTATGTT 1849
Query 1736 ACCAAGAGGAAGATTCTGCTAAAGAGAACTGCGACAAATCTGAGTATCACACTAACCGCA 1795
||||||| |||| ||| | || ||||||||||| |||| ||||||||| ||| ||||
Sbjct 1850 ACCAAGAAGAAGCTTCCACCAATGAGAACTGCGATAAATATGAGTATCAGACTGACCGTG 1909
Query 1796 AGATCAGCAAAATCATCTCGGACTACATGATGTATCTCTTGATCATGCAGCCTAAGCTGA 1855
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1910 AGATCAGCAAAATCCTCTCGGACTACATGATGTATCTCTTGATCATGCAGCCCAAGCTGA 1969
Query 1856 TGTCAGAAGTAGCTGGCATAGGAAAGATCAGATTCAGAGACACATTAGCCGAGGCTGATA 1915
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1970 TGTCAGAGGTAGCTGGCATAGGAAAGATCAGATTCAGAGACACATTGGCCGAAGCTGAGA 2029
Query 1916 GGT-TCTTCAAGAAGATGGGTATCATCAGAGACTCTAGAAATGTGAAATTAGCCAGCAAG 1974
| | | |||||||||||||||||||| | | ||||||| | |||||||||||||| ||
Sbjct 2030 GATAT-TTCAAGAAGATGGGTATCAT-A-A-ACTCTAGGAGCGTGAAATTAGCCAGTGAG 2085
Query 1975 GAAATTCTTTCAGCCGATACAAGTATCGAACCTAGGGAAGTCAAAGGAAATCATAGCAAA 2034
|||||||||||| |||||| || |||||||| ||||| |||||||||||||||||||||
Sbjct 2086 AAAATTCTTTCAGTCGATACCAGCATCGAACCAAGGGATGTCAAAGGAAATCATAGCAAA 2145
Query 2035 TCAGTGTTATTTGAGGCAAGCTCACTGGCCAAAGAACTTCAGAGAGTGGAAAAGAACTTT 2094
||||| |||||||||| ||| ||| |||||||||||||||||| | |||| ||| | |||
Sbjct 2146 TCAGTTTTATTTGAGGTAAGTTCAGTGGCCAAAGAACTTCAGAAAATGGAGAAGGATTTT 2205
Query 2095 GGAGAAGACAAATGGAAGATACTTAGCAAAGTGTGGTTGGAGTTCCTCTTCCATGCAGCA 2154
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2206 GGAAAAGACAAATGGAAGATACTTAGCAAAGTGTGGTTGGAGTTCCTCTTCCACGCAGCA 2265
Query 2155 TCACATTGTGATGCAACAACACGTATGGAGCTTCTTAGCAAAGGTGGGGAGTTCATCAAC 2214
|| |||||||| | ||||||||| |||||||||| ||||||||||| |||||||| |||
Sbjct 2266 TCCCATTGTGACGGTACAACACGTTTGGAGCTTCTAAGCAAAGGTGGAGAGTTCATAAAC 2325
Query 2215 TTCGTTTGGCTACTAATGGCTCACTTTGGCCTAGGGGGTTGA 2256
||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2326 TTCGTTTGGCTACTAATGGCTCACTTTGGCCTAGGGGATTGA 2367
Score = 573 bits (310), Expect = 2e-162
Identities = 448/514 (87%), Gaps = 12/514 (2%)
Strand=Plus/Plus
Query 182 CATTGATTGCCAAGAACCAAGGTAAATATCTTAAACCTGATGATCCTCCTCAAAACAAGA 241
|||||||||||||||||||||||||| | |||||| ||||||||||| ||||| ||||
Sbjct 200 CATTGATTGCCAAGAACCAAGGTAAAGCCCCTAAACCCGATGATCCTCCGCAAAATAAGA 259
Query 242 AGCTCGTCGCCTTGTGGGCACCTTTCTTGCTCTTACACCTTGGTGGACCAGACACCATCA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 AGCTCGTCGCCTTGTGGGCACCTTTCTTGCTCTTACACCTTGGTGGACCAGACACCATCA 319
Query 302 CTGCCTTTTCCCTCGAAGACAATGCTCTCTGGAACAGACATTTTCTTGGGCTTGTCTTTC 361
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 320 CTGCGTTTTCCCTCGAAGACAATGCTCTTTGGAACAGACATTTTCTTGGCCTTATCTTTC 379
Query 362 AGGCGCTTGCAGGTGTATATGTAGTTGTCCAGTCTCTACCCAATGTACTCTCGGTGATAA 421
|||| ||||||||||||||||| ||||||||||||||||||||||| || | |||||| |
Sbjct 380 AGGCACTTGCAGGTGTATATGTGGTTGTCCAGTCTCTACCCAATGTGCTTTGGGTGATGA 439
Query 422 T-CTTGTTGCTTTTCATTGCTGGGACTTCTAAGTATTTGGAACGGACAATTGCGTTGTAC 480
| || |||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 440 TACT-GTTGCTGTTCATTTCTGGGACTTCTAAGTATCTGGAAAGGACAATTGCGTTGTAC 498
Query 481 CTCGCGAGTTCAGACAAGTACAGGAACTCGATGTTGCAGGCGTCCAATTCAAGG-TTTGA 539
||||| ||||||||||||| |||| ||||||||||||||| |||||| | ||| |||||
Sbjct 499 CTCGCAAGTTCAGACAAGTTCAGGGGCTCGATGTTGCAGGCTTCCAAT-CTAGGGTTTGA 557
Query 540 CTACACCGATCAAACAAGGGACTTAGACATGGACACGA-AACTTGCTTCTGAGATGAACA 598
||| ||| ||||||| | || |||| | |||| | | || |||| ||||||||| |||
Sbjct 558 AAACAACGAGCAAACAAAGAACCTAGATACGGACTCAATAA-TTGCATCTGAGATGTACA 616
Query 599 TGAAGGAGCATCGCGGACAACCAAAACCTCTGAAGTT-ATTGCAACCAC-ATAAA-GAGT 655
|||||||| | |||||||| || ||||||||||| | || | || | ||| | | |
Sbjct 617 TGAAGGAGAACCGCGGACAGCCGAAACCTCTGAAACTCAT-GTTTCC-CGATAGACGC-T 673
Query 656 TAACCCACCTTGAGATTCTTCAATATGCATTCTT 689
| ||||||||||| |||||||||||||| |||||
Sbjct 674 TGACCCACCTTGAAATTCTTCAATATGCTTTCTT 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84941246350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5