BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G19100.1

Length=683
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492947 jgi|Araly1|492947|fgenesh2_kg.7__2380__AT4G19100.1        1022    0.0  


> Ahg492947 jgi|Araly1|492947|fgenesh2_kg.7__2380__AT4G19100.1
Length=678

 Score = 1022 bits (553),  Expect = 0.0
 Identities = 638/679 (94%), Gaps = 6/679 (1%)
 Strand=Plus/Plus

Query  10   TCGAAACAGAACATAGAA-CGAAAGAA---AGAATGGCTTCTGTACCATGTTCCTTCAAG  65
            ||||||||||||| |||| | ||||||    |||||||||||||||||||||||||||||
Sbjct  1    TCGAAACAGAACAGAGAACCCAAAGAATCTCGAATGGCTTCTGTACCATGTTCCTTCAAG  60

Query  66   CTCTCTGCTCATCGTAGATCTTCTTCCAAGCTTGATGGAAACAACAAACAGTGTAGTAGT  125
            |||||||||||||  |||||||||||||||| |||||||||| |||||||||||||||| 
Sbjct  61   CTCTCTGCTCATCCCAGATCTTCTTCCAAGCATGATGGAAACTACAAACAGTGTAGTAGC  120

Query  126  TTAGTAGAAAGACTGAGAGATAAAACGAAGAGTCAAGTTCCTAAGTCCATTACTTGCATT  185
            |||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  121  TTAGTAGAAAGACACAGAGACAAAACGAAGAGTCAAGTTCCTAAGTCCATTACTTGCATC  180

Query  186  AACCGCTTAGAGATATCGCGTATAGCACCATTACACGCAACGATGAATAGCCCGAAAGGA  245
            |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| 
Sbjct  181  AACCGCTTGGAGATATCGCGTATAGCACCATTACACGCAACTATGAATAGCCCGAGAGGT  240

Query  246  TTTGGACCTCCTCCTAAGAAAACCAAGAAGTCGAAAAAGCCAAAACCCGGAAACCAAAGt  305
            ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct  241  TTTGGACCTCCTCCTAAGAAAACCAAGAAGTCGAAAAAGCCGAAACCTGGTAACCAAAGT  300

Query  306  gatgaagacgacgacgatgaagacgaagatgatgatgatgaagaagatgaacgtgagaga  365
            || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  301  GACGAAGAGGACGACGATGAAGACGAAGATGATGATGATGATGAAGATGAACGTGAGAGA  360

Query  366  GGTGTAATTCCAGAGATAGTGACCAACAGAATGATAAGCAGAATGGGATTTACAGTGGGG  425
            ||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct  361  GGTGTGATTCCAGAGATAGTGACCAACAGAATGATTAGCAGAATGGGATTCACTGTGGGG  420

Query  426  TTACCACTCTTCATTGGTCTTTTGTTCTTCCCATTCTTTTACTATCTCAAAGTGGGATTG  485
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  421  TTACCACTATTCATTGGTCTTTTGTTCTTCCCATTCTTTTACTATCTCAAAGTGGAATTG  480

Query  486  AAAGTTGATGTGCCTACATGGGTTCCGTTTATTGTTTCGTTCGTCTTCTTTGGTACGGCT  545
            ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  481  AAAGTTGATGTTCCTACATGGGTTCCGTTTATTGTTTCGTTCGTCTTCTTCGGTACGGCT  540

Query  546  TTAGCTGGTGTGAGCTATGGGATCGTGTCTTCGAGCTGGGATCCGTTGAGAGAAGGTTCC  605
            ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || 
Sbjct  541  TTAGCTGGTGTGAGCTACGGGATCGTGTCGTCGAGCTGGGATCCGTTGAGAGAAGGATCG  600

Query  606  TTGTTAGGCTGGAACGAAGCTAAGAAGAACTGGCCTGTCTTTTGGCAGTCCTTTT-GGAA  664
            ||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct  601  TTGTTAGGCTGGAACGAAGCTAAGAAGAACTGGCCTGTCTTTTGGCAATC-TTTTAGGAA  659

Query  665  TTCCTCAGACAAGAGATAG  683
            |||||||||||||||||||
Sbjct  660  TTCCTCAGACAAGAGATAG  678



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25084879386


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5