BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19112.1
Length=2575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492943 jgi|Araly1|492943|fgenesh2_kg.7__2376__AT4G19112.1 3899 0.0
> Ahg492943 jgi|Araly1|492943|fgenesh2_kg.7__2376__AT4G19112.1
Length=2486
Score = 3899 bits (2111), Expect = 0.0
Identities = 2395/2524 (95%), Gaps = 52/2524 (2%)
Strand=Plus/Plus
Query 1 AAATATTCTTTTTCTAGCTCGGGAATATAAAATCGTAGGGtttttttttGGTCATCACGA 60
||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 AAATATTATTTTTCTAGCTGGGGAATATAAAATCGTAGGTTTTTTTTTTGGTCATCACGA 60
Query 61 GAGAACCGCACATTG-AAAAGGGAAGGAAGAGAGATATTTGGCAGAGAGAGAAAACGTTG 119
||||||||||||| | |||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 61 GAGAACCGCACATAGAAAAAAGCAAGGAAGAGAGATATTTGGCAGAGAGAGAAAACGGTG 120
Query 120 GAGGAAGGATTGATATTTGTTGGAC-TTTGGATCGAAAAATTGAAAGGTAAAAGAGGTAG 178
|| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 121 GATGAAGGATTGATATTTGTTGGACTTTTGGATCGAAAAATTGAAAGGT-AAAGAGGTAG 179
Query 179 AGAAGCTCTGGATTCCGTCTCTTCCCGTCGTCGGCGACGGTGGTTTTGCCCGTTGGCTCT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAAGCTCTGGATTCCGTCTCTTCCCGTCGTCGGCGACGGTGGTTTTGCCCGTTGGCTCT 239
Query 239 GAGGTTATATCAGGCTTTAATTTAAGTGGATTGTCATCTTCTGAGATATGGAACAAGTTT 298
|||||| ||||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct 240 GAGGTTCTATCAGGCTTTAATTTAAGTGGATTTTCTTCTTCTGAGATATGGAGCAAGTTT 299
Query 299 TTGTCTGGCCAAGCTGCTACCACTATCGGCTTTTCTCATTCCAAGAAGCGCTCGATTGGC 358
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTGTCTGGCCAAGCTGCTATCACTATCGGCTTTTCTCATTCCAAGAAGCGCTCGATTGGC 359
Query 359 GGTTTCTTGTACGTTCTGATTTCCTTGTGGGCTCTTTCGTTAACTGCACTTAGTGGTCAA 418
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGTTTCTTGTACGTTCAGATTTCCTTGTGGGCTCTTTCGTTAACTGCACTTAGTGGTCAA 419
Query 419 ACCCTCTTCTATGATCTTTAGGGGAAGGTGTGAGGCAAATTTCTGAGACAGGGCTGAAGT 478
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 420 ACCCTCTTCTATGATCTTTAGAGGAAGGCGTGAGGCAAATTTCTGAGACAGGGCTGAAGT 479
Query 479 CTGCAAATTCTTCCTTCGCATAGTCCTAGAGAAACCTCTTTGTTCCTCTCTTTCATATCT 538
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 CTGCAAATTCTTCCTTTGCATAGTCCTAGAGAAACCTCCTTGTTCCTCTCTTTCATATCT 539
Query 539 TGTTCTTATGGGTGCTGGTTGAAGAAAGATACATCAATTTCTTTTCTTTTTC-AGTTTAC 597
||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 540 TGTTCTTATGGGTGCTGGTTGAAGAAAGATACATC-A---GTTTTCTTTTTCAAGTTTAC 595
Query 598 AAATGTCGTTTCCTTGAGTCTGAACCCCTGAGTGAGATGTTGTGAGCATAGGGTCCTTCC 657
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ATATGTGGTTTCCTTGAGTCTGAACCCCTGAGTGAGATGTTGTGAGCATAGGGTCCTTCC 655
Query 658 TATTAGCCAAAACAGTCTTTCTTGTTGGTTCCTTCGCGTCTTTGAGTTCTCAGTATGTGT 717
|||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 656 TATTAGCCAACACATTCTTTCTTGTTGGTTCCTT-GCGTCTTTGAGTTCTCAGTATGTGT 714
Query 718 TTTCCTCTTCTCTTGCTCTCTTTCTTTTGCCTAAATGGTCAACCCGTTTATGTTCGAAGT 777
||||||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||
Sbjct 715 TTTCCTCTTCTCTTGCTGTCTTTCTTTTGCCTTAATGGTCAACCCGTTTATGTGCAAAGT 774
Query 778 AAATAACGGTCAGTCTACCCAGCTGGAGAATCATTGATTTTACTGCCTTGGTGTCAAGTA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AAATAACGGTCAGTCTACCCAGCTGGAGAATCATTGATTTTACTGCCTTGGTGTCAAGTA 834
Query 838 CTTCCTACGAACGACTGGAAGATTAATGCTATATAAATCTTTCAGAAGTTCTTTACTTAC 897
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 835 CTTGCTACGAACGACTGGAAGATTAATGCTATATAAATCTTTCAGAAGTTCTTTACATAC 894
Query 898 ---ATAATATAAAGAGGCTACTTTGCTTAACCAGaaaaaaaaaGATGGACAGGTACAAGT 954
||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||
Sbjct 895 AGAATAATATAAAGAGGCTACTTTGCTTTACC-G--GAAAAACGATGGACAGGTACAAGT 951
Query 955 TAATTAAAGAGGTTGGTGATGGAACTTTTGGTAGTGTTTGGCGAGCTATAAATAAGCAGA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TAATTAAAGAGGTTGGTGATGGAACTTTTGGTAGTGTTTGGCGAGCTATAAATAAGCAGA 1011
Query 1015 CGGGTGAAGTCGTTGCAATTAAGAAAATGAAAAAGAAGTACTACTCTTGGGATGAATGTA 1074
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1012 CGGGTGAAGTCGTTGCAATTAAGAAAATGAAAAAGAAGTACTACTCTTGGGACGAATGTA 1071
Query 1075 TTAATCTGAGAGAAGTTAAGTCGCTCAGGAGAATGAATCATCCAAACATTGTGAAGTTGA 1134
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1072 TTAATCTGAGAGAAGTGAAGTCGCTCAGGAGAATGAATCATCCAAACATCGTGAAGTTGA 1131
Query 1135 AGGAAGTAATCCGGGAAAATGATATCCTATACTTTGTCTTTGAGTACATGGAGTGCAATC 1194
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 AGGAAGTCATCCGGGAAAATGATATCCTATACTTTGTCTTTGAGTACATGGAGTGCAATC 1191
Query 1195 TTTACCAACTTATGAAGGATCGACAAAAGCTTTTTGCAGAAGCTGATATCAAAAATTGGT 1254
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1192 TTTACCAGCTTATGAAGGATCGACAAAAGCTTTTTGCAGAAGCTGATATCAGAAATTGGT 1251
Query 1255 GCTTTCAAGTCTTCCAAGGCCTTTCTTACATGCATCAGCGTGGTTACTTCCACCGCGATC 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GCTTTCAAGTCTTCCAAGGCCTTTCTTACATGCATCAGCGTGGTTACTTCCACCGCGATC 1311
Query 1315 TTAAGCCAGAAAATCTGTTAGTCTCTAAAGACATCATTAAGATTGCTGATTTTGGCCTGG 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TTAAGCCAGAAAATCTGTTAGTCTCTAAAGACATCATTAAGATTGCTGATTTTGGCCTGG 1371
Query 1375 CACGTGAGGTTAATTCGAGTCCACCTTTTACCGAGTATGTTTCTACACGCTGGTACAGGG 1434
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 CCCGGGAGGTTAATTCGAGTCCACCTTTTACCGAGTATGTTTCTACACGCTGGTACAGGG 1431
Query 1435 CTCCTGAAGTACTTCTACAGTCATATGTATACACATCGAAAGTTGATATGTGGGCGATGG 1494
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1432 CTCCTGAAGTACTCCTACAATCATATGTATACACATCAAAAGTTGATATGTGGGCGATGG 1491
Query 1495 GAGCTATTATGGCTGAGTTGTTGTCTCTTCGCCCCATTTTTCCTGGGGCTAGTGAAGCAG 1554
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1492 GAGCTATTATGGCTGAGTTGTTGTCTCTTCGCCCAATTTTTCCTGGGGCTAGTGAAGCAG 1551
Query 1555 ATGAAATCTACAAAATCTGCAGTGTCATAGGCACCCCAACTGAGGAGACCTGGTTGGAGG 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 ATGAAATCTACAAAATCTGCAGTGTCATAGGCACCCCAACTGAGGAGACCTGGTTGGAGG 1611
Query 1615 GACTTAATCTTGCAAACACA-ATAAACTATCAATTCCCTCAGCTTCCTGGTGTACCTCTT 1673
||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1612 GACTTAATCTTGCTAACA-ATATAAACTATCAATTCCCTCAGCTTCCTGGTGTACCTCTT 1670
Query 1674 TCTAGCTTGATGCCATCTGCTAGTGAAGACGCAATTAATCTTATTGAGCGACTTTGCTCG 1733
|| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1671 TCAAGCTTGATGCCATCTGCTAGTGAAGATGCAATTAATCTTATTGAGCGGCTTTGCTCG 1730
Query 1734 TGGGATCCATCCAGCAGACCGACTGCTGCAGAGGTGCTGCAGCACCCGTTCTTCCAGAGT 1793
|||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1731 TGGGATCCATGCAGCAGACCGACTGCTGCTGAGGTGCTGCAGCATCCGTTCTTCCAGAGT 1790
Query 1794 TGCTTTTATGTCCCACCATCTCTTCGTCCCAAGCCTTCTGTTGCAAGAACTCCTCCGCCT 1853
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1791 TGCTTTTATGTCCCACCATCTCTTCGTCCCAAGCCTTCTGTTGCAAGAACTCCTCC-C-- 1847
Query 1854 GTCGGGCCTAGGGGATCATTCGAGCACCAATCAGTTAAACGGTACCCAGTGTCTCTTGCC 1913
| | | | |||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1848 G-C---C-T-GGGGATCATTCGAGCACCAATCAGTTAAACGGCACCCGGTGTCTCTTGCC 1901
Query 1914 AATGCTAAGCCATTCAATAGCTATGTTTCCCCAAAGTCAAATGCCGCTTTTGGCAGTGGT 1973
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1902 AATGCTAAGCCATTCAATAGCTATGTTTCCCCAAAATCAAATGCCGCTTTTGGCAGTGGC 1961
Query 1974 GTCCAGCGGAAACTTGATATGGTTAATCAAGATGGGACGAGAAACACTAAACCCGTGAGA 2033
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1962 GTCCAGCGGAAACTCGAGATGGCTAATCAAGATGGGACGAGAAACACTAAACCCGTGAGA 2021
Query 2034 AGTTCTGTCAGAGACTCCAAATACAGACCACCCGG-AAAAAAGAGTCCTCATAATGCAGC 2092
||||||||||||||||||||||||||||||||||| |||||| |||||||| || |||||
Sbjct 2022 AGTTCTGTCAGAGACTCCAAATACAGACCACCCGGGAAAAAA-AGTCCTCAAAAAGCAGC 2080
Query 2093 AGCAGCATCGTTGAACAAGAACCGGGTCACTCGTAGTAGTGTATCCGAGACTGCTGATAA 2152
|||||| || |||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct 2081 AGCAGCGTCATTGAACAAGAACCGGGTCACGCGTAGT-GT--ATCCGAGACTGCTGATAA 2137
Query 2153 ACTCGCAAACATGACCATTGGAGCAACTGGATCTCGAAGACACTCTGTGTCTGTGGTTGG 2212
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2138 ACTCGCAAACATGACCATTGGAGCAACTGGATCTCGAAGACACTCTGTATCCGTGGTTGG 2197
Query 2213 ACAGCATCAACAGCTGAAACCACCTCCGATGAAGGCAGGTTGGGTAGGAGAAACACGTGA 2272
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2198 ACAGCATCAACAGCTGAAACCACCTGCGATGAAGGCAGGTTGGGTAGGAGAAACACGTGA 2257
Query 2273 CATGTTCCTTAGACCAACACAACCCACCACCAATGCCTACTCTAGGAAAGTCGCCGGATG 2332
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2258 CATGTTCCTTAGACCAACACAACCCACCACCAATGCCTACTCTAGGAAAGTCGCTGGATG 2317
Query 2333 ACCCCTAAACCAATAGTAACTCAAGCATGCCTCTTCTGAGCAAATATTTTACTTTATAAA 2392
|||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| |||
Sbjct 2318 ACCCCTAAACAAATAGTAACTCAAGCAAGCCTCTTCTGAGCAAATATTT-ACTTTACAAA 2376
Query 2393 CTCTCTAAT-AA-TCTTATACAT-CATCAGAAAAAACAAGT--CTCCttttttctttttt 2447
|||||| || || ||| | | || |||||||||| ||||| |||||||| ||||| |
Sbjct 2377 CTCTCTTATTAAGTCTCA-A-ATTCATCAGAAAA--CAAGTGTCTCCTTTT--CTTTTAT 2430
Query 2448 tttCGACGGCGCGTCTTTGC-CTCGTCAATGGTTCTGCttttgttttcttttcttaattt 2506
|||| || ||||||| | ||||||| |||||||||||||||| ||||||| ||||
Sbjct 2431 ----GACG-CG--TCTTTGCGC-CGTCAATAGTTCTGCTTTTGTTTTATTTTCTTGATTT 2482
Query 2507 ctgt 2510
|||
Sbjct 2483 TTGT 2486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97092034505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5