BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19140.1
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492939 jgi|Araly1|492939|fgenesh2_kg.7__2372__AT4G19140.1 1552 0.0
Ahg888715 jgi|Araly1|888715|Al_scaffold_0007_701 374 1e-102
Ahg916348 jgi|Araly1|916348|Al_scaffold_0008_1099 366 2e-100
Ahg915317 jgi|Araly1|915317|Al_scaffold_0008_68 366 2e-100
> Ahg492939 jgi|Araly1|492939|fgenesh2_kg.7__2372__AT4G19140.1
Length=1051
Score = 1552 bits (840), Expect = 0.0
Identities = 1003/1077 (93%), Gaps = 30/1077 (3%)
Strand=Plus/Plus
Query 120 TTGTTCTGAGTAAAACTCACTCACCGTCACCGGAGAAGAAAGTGTAAATGGATTCCGAAG 179
||||||||||| | | ||||| | ||||||||||||| | || |||||||||||||
Sbjct 1 TTGTTCTGAGT-AGA---ACTCA-C-TCACCGGAGAAGATA--GT--ATGGATTCCGAAG 50
Query 180 AAACGACGTCGTCGGTAACGACTACAAAGAAGCAAAAGAGGGTTTTCTCTTCGTTAGCTT 239
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 51 AAACGACGTCGTCGGTGACGACGACAAAGAAGCAAAAGAGGGTTTTCTCTTCGTTAGCTT 110
Query 240 TGCGATTCCGTACAGTGATAGTTTTCTCGATCATTAGCTTCGTCGTCTTGTCGTTTCTAT 299
|||||||| |||||||| |||| ||||||||||| |||||||||||||||||||||||||
Sbjct 111 TGCGATTCTGTACAGTGCTAGTCTTCTCGATCATCAGCTTCGTCGTCTTGTCGTTTCTAT 170
Query 300 TAGGAATCTTAGTGATTTTCATCGGTGAATTGTGGGTTTATTC-TTCTTCATCTGCTTCT 358
||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |||||
Sbjct 171 TAGGAATCTTAGTGATTTTCATCGGTGAATTGTGGGTTTATTCATT-TTCTTCTTCTTCT 229
Query 359 GCTTCTCTTCATTCTCGCTGCAAAATTGTTTCCAGCTCTGTTGATCTTAGGTCTTCTAAA 418
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 230 GCTTCTCTTCATTCCCGCTGCAAAATTGTTTCCAGCTCTGTTGATCTAAGGTCTTCTAAA 289
Query 419 GTGTGTGGCATTGGACTATTGAACGTCAAAGCACAACATGTGTTTTACCCTTTTGAGAGA 478
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 290 GTGTGTGGCATTGGATTATTGAACATCAAAGCACAACATGTGTTTTACCCTTTTGAGAGA 349
Query 479 GATAAATTCAGATGTCGTTATGATTACTACTGGGCTTCTGTCTTCAA-G--GTAGAGTAT 535
||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 350 GATAAATTCAGATGTCGTTATGATTACTATTGGGCTTCTGTCTTCAAGGTTGTAGAGTAT 409
Query 536 AAAGATAACTTAATGGGTCAAACACGGTTAGCGTTTTCAGAAGCACCAAATGAAGCTCTT 595
|||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 410 AAAGATAACTTAATCGGTCAAACACGGCTAGCGTTTTCAGAAGCTCCAAATGAAGCTCTT 469
Query 596 CCTCCTGAGTGCAGACCTAACTTTGGTGCTGCATTACTTACCAAAGATAACTTCAAGGTT 655
|||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 470 CCTCCTGAGTGCAGACCTAACTTTGGTGCTGCGTTGCTTACTAAAGATAACTTCAAGGTG 529
Query 656 AATGAGACTTACGATTGCTGGTACACATTAGGGATTCCAAAGATAAAGCTTTATCGGGAT 715
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 AATGAGACTTATGATTGCTGGTACACATTAGGGATTCCAAAGATAAAGCTTTATCGGGAT 589
Query 716 AGCTTTTTCGGTTGCCAAGCAGATGATCTTTCTTTCACTGACATTGCTAAGCAATACTCT 775
||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||
Sbjct 590 AGCTTTTTCGGTTGCCAAGCAAATGATCTTTCTTTCACCGACATTGTTAAGCAATACTCT 649
Query 776 ATTGTAATCTCTAAACTTTTACAGTCATGGCTTAATGGAGAATCAACACCAAAGTACTGG 835
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 650 GTTGTAATCTCTAAACTTTTACAGTCATGGTTTAATGGAGAAGCAACACCAAAGTACTGG 709
Query 836 AAATATGATGTGATCGCTGGCATTGTCTCTGGCTTCGCAACTTCCATAATCACAGTCTTC 895
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 710 AAATATGATGTGATCGCTGGCACTGTCTCTGGCTTCGCAACTTCCATAATCATAGTCTTC 769
Query 896 ATCATAAGGATCTTAAGACATGCAAAATCTTGGTTCCCTCAAGCTTGTTGTTCAGTTAAG 955
||| || |||||||| |||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 770 ATCGTACGGATCTTACGACATGCAAAATCTTGGTTCCCTCGAGCTTGTTGTTCAGTGAAG 829
Query 956 AGACAGTTTTCTAAGGTGAATATATTGGTACAAGTGAAACGTGCATGTTTGCTTCTTGTT 1015
|| |||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 830 AGCCAGTTTTCTAAGGTGAATCTCTTGGTACAAGTGAAGCGTGCATGTTTGCTTCTTGTT 889
Query 1016 TACTTCTCGGTTCTCGGATGGATGGCTACACAATACTTAAAAATTCTTTTTCCAAATGCT 1075
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 890 TACTTCTCGGTTCTCGGATGGATGGCGACACAATACTTGAAAATTCTTTTTCCAAAGGCT 949
Query 1076 TAGGAAAAAACATTACTTGAGAGTCAGTGAGTATGTAATGATTCGTAGACAGTTGTGTGA 1135
||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 950 TAGGA-------------GAGTG--AGTGAGTATGTAATGATTCGTAGACAGTTGTGTGA 994
Query 1136 TGTAATCTTAAATCATTTACAGAAAAAGAAAGCAATACAGAGAAACAGCTTTAAAGT 1192
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 TGTAATCTTAAATCATTTACAGAAAAAGAAAGCAATACAGAGAAACAGCTTTAAAGT 1051
> Ahg888715 jgi|Araly1|888715|Al_scaffold_0007_701
Length=462
Score = 374 bits (202), Expect = 1e-102
Identities = 293/333 (88%), Gaps = 22/333 (7%)
Strand=Plus/Plus
Query 692 CCAAAGATAAAGCTTTATCGGGATAGCTTTTTCGGTTGCCAAGCAGATGATCTTTCTTTC 751
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 100 CCAAAGATAAAGCTTTATCGGAATAGCTTTTTCGGTTGCCAAGCAAATGATCTTTCTTTC 159
Query 752 ACTGACATTGCTAAGCAATACTCTATTGTAATCTCTAAACTTTTACAGTCATGGCTTAAT 811
|| ||||||| ||||| | | | | |||| || | ||||||||||||
Sbjct 160 ACAGACATTGTTAAGC---A----A---T-A-CTCT-AA----T----TCATGGCTTAAT 198
Query 812 GGAGAATCAACACCAAAGTACTGGAAATATGATGTGATCGCTGGCATTGTCTCTGGCTTC 871
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 199 GGAGAAGCAACACCAAAGTACTGGAAAGATGATGTGATCGCTGGCATTGTCTCTGGCTTC 258
Query 872 GCAACTTCCATAATCACAGTCTTCATCATAAGGATCTTAAGACATGCAAAATCTTGGTTC 931
||||||||||||||||||||||||||| || |||||||| |||||| |||||||||||||
Sbjct 259 GCAACTTCCATAATCACAGTCTTCATCGTACGGATCTTACGACATGTAAAATCTTGGTTC 318
Query 932 CCTCAAGCTTGTTGTTCAGTTAAGAGACAGTTTTCTAAGGTGAATATATTGGTACAAGTG 991
|||| ||||||||||||||| ||||| |||||||||||||||||| | ||||||||||||
Sbjct 319 CCTCGAGCTTGTTGTTCAGTAAAGAGCCAGTTTTCTAAGGTGAATCTCTTGGTACAAGTG 378
Query 992 AAACG-TGCATGTTTGCTTCTTGTTTACTTCTC 1023
|| || |||||| |||||||||||||| |||||
Sbjct 379 AAGCGGTGCATGCTTGCTTCTTGTTTATTTCTC 411
Score = 156 bits (84), Expect = 4e-37
Identities = 92/96 (96%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 398 GTTGATCTTAGGTCTTCTAAAGTGTGTGGCATTGGACTATTGAACGTCAAAGCACAACAT 457
|||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1 GTTGATCTTATGTCTTCTAAAGTATGTGGCATTGGACTATTGAACATCAAAGCACAACAT 60
Query 458 GTGTTTTACCCTTTTGAGAGAGATAAATTCAGATGT 493
|||||||||||||||||||||||||||||||||||
Sbjct 61 TTGTTTTACCCTTTTGAGAGAGATAAATTCAGATGT 96
> Ahg916348 jgi|Araly1|916348|Al_scaffold_0008_1099
Length=627
Score = 366 bits (198), Expect = 2e-100
Identities = 237/256 (93%), Gaps = 1/256 (0%)
Strand=Plus/Plus
Query 799 GTCATGGCTTAATGGAGAATCAACACCAAAGTACTGGAAATATGATGTGATCGCTGGCAT 858
|||||||||||||||| || |||||||||||||||||||| |||||||||| ||||||||
Sbjct 336 GTCATGGCTTAATGGAAAAGCAACACCAAAGTACTGGAAAGATGATGTGATTGCTGGCAT 395
Query 859 TGTCTCTGGCTTCGCAACTTCCATAATCACAGTCTTCATCATAAGGATCTTAAGACATGC 918
|||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 396 TGTCTCTGGCTTCGCAACTTCCATAATCACAGTCTTCATCGTACGGATCTTACGACATGT 455
Query 919 AAAATCTTGGTTCCCTCAAGCTTGTTGTTCAGTTAAGAGACAGTTTTCTAAGGTGAATAT 978
||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 456 AAAATCTTGGTTCCCTCGAGCTTGTTGTTCAGTAAAGAGCCAGTTTTCTAAGGTGAATCT 515
Query 979 ATTGGTACAAGTGAAACG-TGCATGTTTGCTTCTTGTTTACTTCTCGGTTCTCGGATGGA 1037
|||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| |
Sbjct 516 CTTGGTACAAGTGAAGCGGTGCATGTTTGCTTCTTGTTTATTTCTCGGTTCTCGGATGAA 575
Query 1038 TGGCTACACAATACTT 1053
|||| | |||||||||
Sbjct 576 TGGCGATACAATACTT 591
> Ahg915317 jgi|Araly1|915317|Al_scaffold_0008_68
Length=585
Score = 366 bits (198), Expect = 2e-100
Identities = 237/256 (93%), Gaps = 1/256 (0%)
Strand=Plus/Plus
Query 799 GTCATGGCTTAATGGAGAATCAACACCAAAGTACTGGAAATATGATGTGATCGCTGGCAT 858
|||||||||||||||| || |||||||||||||||||||| |||||||||| ||||||||
Sbjct 294 GTCATGGCTTAATGGAAAAGCAACACCAAAGTACTGGAAAGATGATGTGATTGCTGGCAT 353
Query 859 TGTCTCTGGCTTCGCAACTTCCATAATCACAGTCTTCATCATAAGGATCTTAAGACATGC 918
|||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 354 TGTCTCTGGCTTCGCAACTTCCATAATCACAGTCTTCATCGTACGGATCTTACGACATGT 413
Query 919 AAAATCTTGGTTCCCTCAAGCTTGTTGTTCAGTTAAGAGACAGTTTTCTAAGGTGAATAT 978
||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 414 AAAATCTTGGTTCCCTCGAGCTTGTTGTTCAGTAAAGAGCCAGTTTTCTAAGGTGAATCT 473
Query 979 ATTGGTACAAGTGAAACG-TGCATGTTTGCTTCTTGTTTACTTCTCGGTTCTCGGATGGA 1037
|||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| |
Sbjct 474 CTTGGTACAAGTGAAGCGGTGCATGTTTGCTTCTTGTTTATTTCTCGGTTCTCGGATGAA 533
Query 1038 TGGCTACACAATACTT 1053
|||| | |||||||||
Sbjct 534 TGGCGATACAATACTT 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44527567056
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5