BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19150.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329621 jgi|Araly1|329621|fgenesh1_pm.C_scaffold_7001848 843 0.0
Ahg492939 jgi|Araly1|492939|fgenesh2_kg.7__2372__AT4G19140.1 110 3e-23
> Ahg329621 jgi|Araly1|329621|fgenesh1_pm.C_scaffold_7001848
Length=756
Score = 843 bits (456), Expect = 0.0
Identities = 536/574 (93%), Gaps = 8/574 (1%)
Strand=Plus/Plus
Query 224 ACTACATTTAGCAGCATGGGCAGGGCACAACGAGGTAGTGAGCTACTTATGCAAGAACAA 283
|||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 180 ACTACACTTAGCAGCATGGGCAGGGCACAATGAGGTCGTGAGCTACTTGTGCAAGAACAA 239
Query 284 AGCTGATGTTGGTGCTGCAGCAGGAGATGACATGGGTGCGATTCACTTTGCTTCTCAAAA 343
|||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 240 AGCTGATGTTGGTGCTTCAGCAGGAGATGACATGGGTGCAATTCACTTTGCTTCCCAAAA 299
Query 344 GGGGCATTTGGAAGTTGTGAGAACTTTATTATCTGCCGGTGGTTCTGTGAAGTCTATCAC 403
||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct 300 GGGGCATTTGGAAGTTGTGAGAACTCTATTATCTGCTGGTGGTTCTGTGAAATCTATCAC 359
Query 404 TCGCAAGGGACTCACTCCTCTTCACTACGCTGCTCAAGGTTCTCACTTTGAAATCGTCAA 463
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 TCGCAAGGGACTCACACCTCTTCACTATGCTGCTCAAGGTTCTCACTTTGAAATCGTCAA 419
Query 464 GTACTTGGTTAAGAAAGGAGC-AAGCGTCAGAGCTACGACTAAGGCTGGGAAGAGTCCAG 522
||||||||||||||||||||| || ||||||||||| || ||||| ||||||| |||||
Sbjct 420 GTACTTGGTTAAGAAAGGAGCGAA-TGTCAGAGCTACTACAAAGGCCGGGAAGAATCCAG 478
Query 523 CTGATGTTGCGGGTAATGCAGAAACGCAAAATTTCCTTGAAGAATGTGAAGAGCAAGCAA 582
| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 479 CAGATGTTGCGGGTAATGCAGAAACCCAAAACTTCCTTGAAGAATGTGAAGAGCAAGCAA 538
Query 583 GGAAAGCTAAGGTGAACAATGAGAAAAAGACGGAA-ATAGTGAAACCAG-AGAGTTGTAG 640
|||||||||||||||||||||||||||||| ||| | ||||||||||| | ||||||||
Sbjct 539 GGAAAGCTAAGGTGAACAATGAGAAAAAGATAGAAGA-AGTGAAACCAGCA-AGTTGTAG 596
Query 641 CAATGAAGGAGATGTCAAGGATCTGAAAAGAAAGGACTCTGAGGATGGAAACGAGGGTGA 700
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CAATGCAGGAGATATCAAGGATCTGAAAAGAAAGGACTCTGAGGATGGAAACGAGGGTGA 656
Query 701 GGAAGAAGAAGCTTCTTCGAA-ACCGAAAAAGCCAAAAGTTGCTCTTTCTCATCTTCAGG 759
| |||||||||||||| | || | |||||||||||||||| |||||||||||||||||||
Sbjct 657 GAAAGAAGAAGCTTCTGC-AATATCGAAAAAGCCAAAAGTCGCTCTTTCTCATCTTCAGG 715
Query 760 ACATTGACGACACAGAAGCTGATCAAGAAGAAGA 793
||| ||| ||||||||||||||||||||||||||
Sbjct 716 ACACTGATGACACAGAAGCTGATCAAGAAGAAGA 749
Score = 73.1 bits (39), Expect = 4e-12
Identities = 55/62 (89%), Gaps = 3/62 (5%)
Strand=Plus/Plus
Query 84 GGCGGAAga---ggaggaggaggaggaggagCATCGGCTGATCTTCACTCCGCGGCAAGA 140
||||||||| || ||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 7 GGCGGAAGAGGCGGTGGAAGAGGCGGTGGAGCATCGGCTGATCTTCACTCCGCGGCAAGA 66
Query 141 TC 142
||
Sbjct 67 TC 68
> Ahg492939 jgi|Araly1|492939|fgenesh2_kg.7__2372__AT4G19140.1
Length=1051
Score = 110 bits (59), Expect = 3e-23
Identities = 59/59 (100%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 986 ACTTTAAAGCTGTTTCTCTGTATTGCTTTCTTTTTCTGTAAATGATTTAAGATTACATC 1044
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 ACTTTAAAGCTGTTTCTCTGTATTGCTTTCTTTTTCTGTAAATGATTTAAGATTACATC 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5