BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19160.2
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492935 jgi|Araly1|492935|fgenesh2_kg.7__2368__AT4G19160.2 2769 0.0
> Ahg492935 jgi|Araly1|492935|fgenesh2_kg.7__2368__AT4G19160.2
Length=1966
Score = 2769 bits (1499), Expect = 0.0
Identities = 1873/2037 (92%), Gaps = 92/2037 (5%)
Strand=Plus/Plus
Query 4 agagagagagaagagaACTACTCAGATATAAAAACCCTAGATTTCTTCTCTTAAAACCCA 63
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 2 AGAGAGAGAGAAGAGAACTACTCTGATATAAAAACCCTAGATTTCTTCTC-TAAAACCCA 60
Query 64 CATCGAATCTCAACTCAGAACCAACAATGCTCCAACCTTTCTCTTCCTCCTCTGTTTTCT 123
|||||||||||||||||||| | ||| ||| | | ||| | | |||||
Sbjct 61 CATCGAATCTCAACTCAGAA-C--CAA-----CAA----T-GC-TCCAAC-C---TTTCT 102
Query 124 CGAGAATCCTCTGGACTTTCTTGGTTTAAGAAGATTCGTTGTTGAATCAGAGAGAAAGAA 183
|||| | ||||||||||||| || || || |||||||||| |||| ||||
Sbjct 103 CGAG-A--------ACTTTCTTGGTTT-AG--GAATCCTTGTTGAATC--AGAG--AGAA 146
Query 184 AGCATCCA-TTTTTCTATCA----TTGCTTGCTTGCTATGGAATTGGGTAAATCTCGATT 238
|||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 147 AGCATCCATTTTTTC-ATCATTGCTTGCTTGCTTGCTATGGAATTGGGTAAATCTCGATT 205
Query 239 CTACTTATGTTGCAATTGCTTTTCTCCTGTTAGATTTTCCGATTATTCTTTAGCTGGAAG 298
||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 206 CTA-TT-TG-TGCAATTGCTTTTCTCCTGTTAGGTTTTCCGATTATTCTTTAGCTGGAAG 262
Query 299 TGATTATCCAGACGCCATCTCCATCACTTTCAATT-GTATTCC-TATACCTTCTTCTGAA 356
|||||||||||||||||| ||||| | ||| ||| | || | | |||||||||||
Sbjct 263 TGATTATCCAGACGCCATATCCATGAATTT-GATTCCCAAACCTTCT-TCTTCTTCTGAA 320
Query 357 GATTCTTCGTAT-TTCTCGATTCGATGTTTATAAACTTCAAAT-TCTCTTCCAAATCTTG 414
|||||||||||| || ||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 321 GATTCTTCGTATCTT-TCGATTCGATGCTTATAAACTTC-AATCTCTCTTCCAAATCTTG 378
Query 415 AAACGAATTTCTCCCAAAAATCT--CTGTTTCTTCACaaaaaaacaaaaaaaCAATGTTG 472
|||||| ||||| |||||||||| || |||| || | || || |||||||||||
Sbjct 379 AAACGATTTTCTTCCAAAAATCTCCCT-TTTC-TCTCTCCCAATCACTCAAACAATGTTG 436
Query 473 TGTGCATCATCTTCGCTTGCTCTTTTGGGTCCTCCTTCTTCAGCTATGGTGACTATGGCT 532
||||||||||||||| ||||||||||||||||| |||||| | | | ||||||||
Sbjct 437 TGTGCATCATCTTCGTTTGCTCTTTTGGGTCCTGCTTCTT---C-A----G-CTATGGCT 487
Query 533 TCTTCACCAGTGTCCAGATTTGTTGGATTTGGTCATCATACTATTCTCAGGTATGATAAT 592
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 488 TCTTCACCAGTTTCCAGATTTGTTGGATTTGGTCATCATACTACTCTCAGGTATGATCAT 547
Query 593 GATCAACGTCTTCGTCGTGGTTGTTCTTGGACTGGAATTGAAAAGAAGATCCCTTTTCCT 652
|||||||| ||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct 548 GATCAACG---TCGTCGTCGTTGTTC-TGGAC-----TTGAAAAGAAGATCCCTTTTCCT 598
Query 653 CGGAAGAAGACTGCCTCTGCTTCTGCTTACCCTCTCTTTCGCAGTCAGCATACTAAAGAC 712
||||| | ||||||||| |||||||||||||||||||||| |||||||| ||||||||||
Sbjct 599 CGGAATAGGACTGCCTCAGCTTCTGCTTACCCTCTCTTTCTCAGTCAGCTTACTAAAGAC 658
Query 713 T---CATCAAGACCCAAAAATTACAAAGAGGTTACTAAGTCAGCCAGGCAAATGTTTGCT 769
| || ||||||||| ||||||| ||||||| |||||||||||| ||||| ||||||||
Sbjct 659 TCACCACCAAGACCCAGAAATTACCAAGAGGTCACTAAGTCAGCCCGGCAATTGTTTGCT 718
Query 770 CGAGAGATCTCTATCCAATCGAAAGACAGTGAAATTTCGATTGCAAAGGTTCTCTTCTAC 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CGAGAGATCTCTATCCAATCGAAAGACAGTGAAATTTCGATTGCAAAGGTTCTCTTCTAC 778
Query 830 ATTGCTGCTGAAGATGAAGCCTTCTTGGCTGTTAACCGAGAGAGGGATGCTCAGTCACTC 889
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 779 ATTGCTGCTGAAGATGAAGCCTTCTTGGCTATAAACCGAGAGAGGGATGCTCAGTCACTC 838
Query 890 ATGAAGGAGAGGGAAAGTGTACAAGATCAGTCTGATCCGAGTGAGACAGACTCTGAGGAG 949
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 839 ATGAAGGAGAGGGAAAGTGTACAAGATCAGTCTGATCCGAGTGACACAGATTCTGAGGAG 898
Query 950 CTATTGCAGTTAGATGGAAAGAGTATATCTGAGTGGGTGAGTGAAATAGATGCAATTTCC 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTATTGCAGTTAGATGGAAAGAGTATATCTGAGTGGGTGAGTGAAATAGATGCAATTTCC 958
Query 1010 AAAGAAGTAGAGGCAGAGTTAGTCTCACGAGATATCGGCTGTCACTTGGTTCAAGTTCTT 1069
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 959 AAAGATGTAGAGGCAGAATTAGTCTCACGAGATATCGGCTGCCACTTGGTTCAAGTTCTT 1018
Query 1070 GAAGCTGTAAATACAGTTCTCTTCGATCTGAGAGGCTTCAAGAGGACATCTATTACTTTA 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GAAGCTGTAAATACAGTTCTCTTCGATCTGAGAGGCTTCAAGAGGACATCTATTACTTTA 1078
Query 1130 GACCCGGAGAATTCCTACCTTCACTCTGTACTTAACTGTAGATGCAGCACTGCGTTTCTG 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1079 GACCCGGAGAATTCCTACCTTCACTCTGTACTTAACTGTAGATGCAGCACTGCATTTCTG 1138
Query 1190 ATTAGTGTAATATACATTGAAGTTTGTAAGCGCCTGAATGTACCAATTGTTGGATCTCCA 1249
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1139 ATTAGTGTAATATACATTGAAGTTTGTAAGCGCCTCAATGTGCCAATTGTTGGATCTCCA 1198
Query 1250 GTTGGGGAAGATTTTCTGATTTGGCCTAAAACGGAGTATCCTGAGGAACTCTTTAAAGCA 1309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GTTGGGGAAGATTTTCTGATTTGGCCTAAAACGGAGTATCCTGAGGAACTCTTTAAAGCC 1258
Query 1310 ACTTCAGGACAGAGCTTGTTCTCTATTGTCAATGGAAGGTGTGTTGATGATCCTGGATCA 1369
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1259 ACTTCAGGACAGAGCTTGTTCTCTATTGTCAATGGAAGGTGCGTTGATGATCCTGGATCA 1318
Query 1370 ATGGCATCAGACTTAACTGCAAAATCACTTCAAGACCTCGACATGGCAACAAACAGAGAC 1429
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1319 ATGGCATCAGACTTAACTGCAAAATCACTTCAAGACCTCGACATTGCAACAAACAGAGAC 1378
Query 1430 ATTATAGGGATTGCTCTAGCCAATTTGATTAGGCTTCACTGGAGACGTGCTTCTAAGTCA 1489
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1379 ATTATAGGGATTGCTCTTGCCAATTTGATTAGGCTTCACTGGAGACGTGCTTCGAAGTCA 1438
Query 1490 TCCCATGGACTTATGCTGACTTCTCCTCTTAGTCAACTTAACAACATCAGTAGTTCTAAT 1549
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TCCCCTGGACTAATGCTGACTTCTCCTCTTAGTCAACTTAACAACATCAGTAGTTCTAAT 1498
Query 1550 TTCCCATTGTTGCGGCCTCAAGATCTTAGGTTGGCTATTGCGGCTGCAGAAAGGTTGTTG 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TTCCCATTGTTGCGGCCTCAAGATCTTAGGTTGGCTATTGCGGCTGCAGAAAGGTTGTTG 1558
Query 1610 ATTTTGCAACCTCATAACTGGGCACTTCGCAGAGACCTTGGTATGATGCTGTACTACGAC 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 ATTTTGCAACCTCATAACTGGGCACTTCGCAGAGACCTTGGTATGATGCTGTACTACGAC 1618
Query 1670 AGGCAATATGGAGAGGCGGTACAAGAGCTGAGCATATGTATGGCATTTGCTCCTCCTGAA 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AGGCAATATGGAGAGGCGGTACAAGAGCTGAGCATATGTATGGCATTTGCTCCTCCTGAA 1678
Query 1730 GAAGAAGCTGTGTTGGAGCCATTTGTAGAAAGACTTCATCTCCTTCGTCTCATATCTTCA 1789
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1679 GAAGAAGCTGTGTTGGAGCCATTTGTAGAGAGACTTCATCTACTTCGTCTCATATCTTCA 1738
Query 1790 TTGAAGCCTCTTGGTTCTGATCGCTTGACCGTTCCTTGACTtctctctctctctctctct 1849
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1739 TTGAAGCCTCTTGGCTCTGATCGCTTGACCGTTCCTTGACGTCTCTCTCTCTCTCTCTCT 1798
Query 1850 ACTCCACTTGTAAATTCACTCTCTTTCTTTCTC--TGT-T--GT-GTGTTTGAAGAACCT 1903
|||||||||||| |||||||||||||||||||| ||| | || |||||||||||||||
Sbjct 1799 ACTCCACTTGTAGATTCACTCTCTTTCTTTCTCGGTGTCTCTGTTGTGTTTGAAGAACCT 1858
Query 1904 TTGTAGTAGGAGACATGGAGCTTTTGTTGTTTGTTGTAACTCTACTAGACTACTACTGTT 1963
|||||||||||||| ||||||||| ||||||||||||| | | | || ||||||||
Sbjct 1859 TTGTAGTAGGAGACTTGGAGCTTT-GTTGTTTGTTGTAG-T--A--A--CT-CTACTGTT 1909
Query 1964 GTTTTCTAATCAGATCTAATGGATTTGGGCCTCCAGCTAAATTTTGAGTTTCCCGTG 2020
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1910 GTTTTCTGATCAGATCTAATGGATTTGGGCCTCCAGCTAAATTTTGACTTTCCCGTG 1966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76028129020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5