BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19170.1
Length=2072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946256 jgi|Araly1|946256|scaffold_702485.1 2724 0.0
> Ahg946256 jgi|Araly1|946256|scaffold_702485.1
Length=1840
Score = 2724 bits (1475), Expect = 0.0
Identities = 1733/1856 (93%), Gaps = 24/1856 (1%)
Strand=Plus/Plus
Query 32 AAAAACAAAAGGAGAGCAATGGActctgtttcttcttcttccttcctctcctccacattc 91
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3 AAAAACAAAAACAGAGCAATGGACTCTGTTTCTTCTTCTTCCTTCATCTCCTCCACATTC 62
Query 92 tctcttcatcactctcttcttcgccgccgatcttcctctcctact-ctcctccGTATCAA 150
|||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 63 TCTCTTCACCACTCTCTTCTTCGCCGCCGATCTTCCTCTCCT-CTCCTCCTCCGTATCAA 121
Query 151 CTCCGCCGTCGTCGAAGAACGTTCTCCAATCACAAACCCAAGCGACAACAATGATCGTCG 210
|||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 122 CTCCGCAGTCGTCGAAGAACGTACTCCGATCACGAACCCAAGCGACAACAATGATCGTCG 181
Query 211 TAACAAACCCAAAACACTCCACAACCGAACCAATCACACCTTAGTCTCATCACCACCGAA 270
|||||||||||||| ||||||||||||||||||||||||| |||||| || || ||||
Sbjct 182 TAACAAACCCAAAAAACTCCACAACCGAACCAATCACACCGCAGTCTCTTCTCCTGCGAA 241
Query 271 ACTCCGACCAGAAATGACTCTCGCAACAGCTCTCTTCACCACCGTCGAAGATGTAATCAA 330
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ACCCCGACCAGAAATGACTCTCGCAACAGCTCTCTTCACCACCGTCGAAGATGTAATCAA 301
Query 331 CACGTTCATCGATCCACCTTCACGTCCTTCCGTTGATCCAAAACATGTCCTCTCTGATAA 390
|||||||||||||||||| |||||||||||||| ||||||||||| || ||||| |||||
Sbjct 302 CACGTTCATCGATCCACCGTCACGTCCTTCCGTCGATCCAAAACACGTTCTCTCCGATAA 361
Query 391 CTTCGCTCCTGTCCTCGACGAGCTTCCTCCAACAGACTGTGAAATCATCCACGGCACTCT 450
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 362 CTTCGCTCCTGTTCTCGACGAGCTTCCTCCAACAGACTGTGAAATCATCCACGGCTCTCT 421
Query 451 TCCACTGTCACTTAACGGCGCTTACATCCGTAACGGTCCAAATCCACAGTTTCTCCCTCG 510
||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TCCGCCGTCACTCAACGGCGCTTACATCCGTAACGGTCCAAATCCACAGTTTCTCCCTCG 481
Query 511 TGGTCCTTACCATCTCTTCGACGGCGACGGTATGCTTCACGCCATAAAAATCCACAACGG 570
|||||||||||||||||| ||||||||||||||||||||||| || ||||| || ||
Sbjct 482 TGGTCCTTACCATCTCTTTGACGGCGACGGTATGCTTCACGCGATTCGTATCCATAATGG 541
Query 571 TAAAGCCACTCTCTGTAGCAGATACGTCAAGACTTATAAATACAACGTCGAGAAACAAAC 630
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 542 TAAAGCCACTCTCTGTAGCAGATACGTCAAGACTTATAAGTACAACGTGGAGAAACAAAC 601
Query 631 CGGAGCTCCGGTTATGCCTAACGTGTTTTCCGGATTCAACGGTGTAACGGCGTCAGTAGC 690
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 602 CGGAGCTCCGGTTATGCCTAACGTGTTTTCCGGATTTAACGGTGTAACGGCATCAGTAGC 661
Query 691 TCGTGGAGCTTTAACGGCAGCTAGGGTTTTAACCGGACAGTATAATCCGGTTAACGGCAT 750
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 662 TCGTGGAGCTTTAACGGCGGTTAGAGTTTTAACCGGACAGTATAATCCGGTTAACGGCAT 721
Query 751 TGGTTTAGCTAATACAAGTCTAGCTTTCTTCAGTAACCGTCTCTTTGCTTTAGGTGAATC 810
||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||||
Sbjct 722 TGGTTTAGCTAATACAAGTCTTGCTTTCTTCTGTAACCGTCTCTTCGCTTTAGGAGAATC 781
Query 811 TGATTTACCCTACGCCGTCCGATTAACCGAATCAGGAGATATTGAAACGATCGGACGGTA 870
|||||||||||||| |||||||||||| || || ||||||||||||||||||||||||||
Sbjct 782 TGATTTACCCTACGTCGTCCGATTAACTGATTCTGGAGATATTGAAACGATCGGACGGTA 841
Query 871 CGATTTCGACGGGAAATTAGCGATGAGTATGACAGCTCATCCTAAAACCGATCCAATAAC 930
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 842 CGATTTCGACGGGAAATTAGCGATGAGTATGACAGCTCATCCAAAAATCGATCCAATAAC 901
Query 931 CGGAGAAACTTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTTTAACATATTTCCGGTT 990
|||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 902 CGGAGAGACTTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTTTAACGTTTTTCCGGTT 961
Query 991 TGATTCCGCCGGGAAAAAACAAAGAGACGTTCCGATATTCTCGATGACGTCTCCGTCGTT 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TGATTCCGCCGGGAAAAAACAAAGAGACGTTCCGATATTCTCGATGACGTCTCCGTCGTT 1021
Query 1051 TCTCCATGACTTCGCGATCACGAAACGTCACGCGATTTTCGCAGAGATTCAGCTTGGCAT 1110
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct 1022 TCTCCATGACTTCGCGATCACGAAACGTCACGCGATTTTCGCGGAGATTCAGATTGGGAT 1081
Query 1111 GAGGATGAA-CATGTTGGATTTG--GTTCTCGAAGGTGGTTCTCCGGTTGGTACTGATAA 1167
||||||||| | | |||||||| ||| | |||||||||||||||||||||| ||||||
Sbjct 1082 GAGGATGAATCC-GATGGATTTGATGTT-T-GAAGGTGGTTCTCCGGTTGGTAATGATAA 1138
Query 1168 CGGAAAAACTCCAAGGCTTGGAGTGATTCCTAAGTACGCCGGAGATGAGTCGGAGATGAA 1227
||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1139 CGGAAAAACACCGAGGCTTGGAGTGATTCCAAAGTACGCCGGAGATGAATCGGAGATGAA 1198
Query 1228 ATGGTTCGAAGTTCCTGGATTCAATATCATTCACGCTATTAATGCTTGGGATGAAGATGA 1287
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1199 ATGGTTCGAAGTTCCTGGATTTAATATCATTCACGCCATTAATGCTTGGGATGAAGACGA 1258
Query 1288 TGGAAACAGCGTCGTTTTGATTGCACCGAATATTATGTCGATTGAACATACTTTAGAGAG 1347
||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 1259 TGGAAACTCCGTCGTTTTGATCGCTCCGAATATTATGTCAATTGAACATACTTTAGAGAG 1318
Query 1348 GATGGATCTGGTTCATGCTTTGGTGGAGAAGGTGAAGATCGATCTCGTCACCGGGATTGT 1407
||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1319 GATGGATTTGGTTCACGCTTTGGTGGAGAAGGTGAAGATCGATCTCGTCACCGGAATTGT 1378
Query 1408 GAGACGTCATCCGATCTCAGCGAGGAATCTCGATTTCGCTGTGATTAATCCGGCGTTTCT 1467
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GACACGTCATCCGATTTCAGCGAGGAATCTCGATTTCGCTGTGATTAATCCGGCGTTTCT 1438
Query 1468 CGGGAGAT-GTAGCAGGTACGTTTACGCGGCGATTGGAGATCCGATGCCGAAGATCTCCG 1526
||| ||| | ||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1439 CGGAAGACAG-AGCAGGTACGTTTACGCGGGGATTGGAGATCCGATGCCGAAAATCTCCG 1497
Query 1527 GTGTGGTGAAGCTTGATGTGTCTAAAGGAGATCGGGATGATTGTACGGTGGCCCGTAGAA 1586
| || |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 1498 GAGTTGTGAAGCTTGATGTGTCTAAAGGAGATCGGGATGATTGCACGGTGGCGCGTAAAA 1557
Query 1587 TGTACGGTTCAGGTTGTTACGGCGGAGAACCGTTTTTCGTAGCTAGGGATCCTGGTAATC 1646
|||||||| |||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1558 TGTACGGTAAAGGTTGTTACGGTGGTGAACCGTTTTTCGTAGCTAGGGATCCTGGGAATC 1617
Query 1647 CGGAGGCGGAGGAGGATGATGGTTATGTGGTGACGTATGTTCACGATGAAGTGACTGGAG 1706
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1618 CGGAGGCGGAGGAGGATGATGGTTACGTGGTGACGTATGTTCACGATGAAGTGACTGGAG 1677
Query 1707 AATCGAAGTTTCTGGTGATGGACGCTAAATCGCCGGAGCTTGAAATCGTCGCCGCCGTGA 1766
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1678 AATCGAAGTTTCTGGTGATGGACGCAAAATCGCCGGAGCTTGAAATCGTCGCCGCCGTGA 1737
Query 1767 GGTTGCCGCGAAGGGTTCCGTACGGATTCCATGGGTTATTTGTCAAGGAAAGTGACCTTA 1826
|| | |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 1738 GGCTACCGCGAAGGGTTCCGTACGGATTCCATGGGTTATTTGTGAAGGAGAGTGACCT-A 1796
Query 1827 ATAAGCTTTAACAATATAGGTAACTGCAATAGTTAATAGAATAATTAAGT-CTTAA 1881
| || | || ||||||||||||||||| | |||||||||||| |||||
Sbjct 1797 A----CT--A----TA--GGTAACTGCAATAGTTAGTGGAATAATTAAGTTCTTAA 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77932641270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5