BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19180.1
Length=2753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492932 jgi|Araly1|492932|fgenesh2_kg.7__2365__AT4G19180.1 3843 0.0
> Ahg492932 jgi|Araly1|492932|fgenesh2_kg.7__2365__AT4G19180.1
Length=2418
Score = 3843 bits (2081), Expect = 0.0
Identities = 2312/2424 (95%), Gaps = 14/2424 (1%)
Strand=Plus/Plus
Query 338 ATGGTTTTTGGTAGGATCACTGAACTTTTTACAGCTGCGTCAAGTCGATTACCAGCGGGT 397
||||||||||||||||| |||||||||||||| ||||| || |||||||| ||||||||
Sbjct 1 ATGGTTTTTGGTAGGATTACTGAACTTTTTACTGCTGCATCGAGTCGATTTTCAGCGGGT 60
Query 398 TCACAATCATCTGTTCCATATATGCCTACTGGATCATCACCGGATGTAGGAACCTCAGTT 457
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TCGCAATCATCTGTTCCGTATATGCCTACTGGATCATCACCGGATGTAGGAACTTCAGCG 120
Query 458 TCGGATTCAATAAGTATTGGGAATGGTGGACGGAAGAATTGTTTGAGACACTCAGCGTCT 517
||||||| || |||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 121 GCGGATTCCATCAGTATTGGGAATGGTGGACGAAAGAATAGTTTGAGACACTCAGCGTCT 180
Query 518 CTCCAAGATTTTTCTTCGTACCATGGGTTTGATCCTGAAGAATCCATTCTTCCTCGGGAA 577
||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 181 CTCCAAGATTTTTCTTCATATCATGGGTTTGATCCTGAAGAATCCATTCTTGCTCGGGAA 240
Query 578 GCTATATCATGGGGACAAAATGGATCAAGTTTTTCCAAGGAAAAGGGGAGTGTCCCTAAT 637
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GCTATATCATGGGGACTAAATGGATCAAGTTTTTCCAAGGAAAAGGGGAGTGTCCCGAAT 300
Query 638 GGGACCAATCCATCTACACGCCGTAAATTGATACGCGCGGTTATGATTGTTATGTGCCTG 697
|||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct 301 GGGACCAATCCATCTACACGCCGTAAATGGATCCGCGCGGTTATGATTGTTTTGTGCCTG 360
Query 698 TTTCTGTTTGCTTTTCTGGTGTATATAGTCTCCATGTATATTTATACAAACTGGTCACGG 757
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 TTTCTGTTTGCTTTTCTGGTGTATATAGTCTCCATGTATATTTATACAAACTGGTCTCGG 420
Query 758 GGAGCATCAAGATATTATGTTGTGTTTGACTGTGGAAGTACTGGGACTCGTGCATATGTT 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGAGCATCAAGATATTATGTTGTGTTTGACTGTGGAAGTACTGGGACTCGTGCATATGTT 480
Query 818 TATCAGGCTTCCATAAACTACAAGAAAGATAGTAGTCTCCCCATTGTTATGAAATCTTTG 877
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATCAGGCTTCTATAAACTACAAGAAAGATAGTAGTCTCCCCATTGTTATGAAATCTTTG 540
Query 878 ACAGAAGGTATTTCTAGAAAGAGTAGGGGTCGTGCTTATGATCGGATGGAGACAGAGCCT 937
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 541 ACAGAAGGTATTTCTAGAAAGAGTAAGGGTCGTGCTTATGATCGGATGGAGACAGAACCT 600
Query 938 GGGTTTGATAAGCTCGTCAATAACAGAACAGGCCTGAAAACTGCAATTAAACCCCTTATT 997
|||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 601 GGGTTTGATAAGCTTGTCAACAACAGAACAGGCCTGAAAACTGCGATAAAACCCCTTATT 660
Query 998 CAGTGGGCAGAGAAGCAAATCCCAAAGAATGCTCATAGAACCACATCTCTCTTTGTTTAC 1057
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 661 CAGTGGGCAGAGAAGCAAATCCCGAAGCACGCTCATAGAACCACATCTCTCTTTGTTTAT 720
Query 1058 GCAACAGCAGGCGTCCGGAGGCTTCGTCCTGCTGATTCAAGCTGGATTTTAGGTAATGTG 1117
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 721 GCAACAGCGGGCGTCCGGAGGCTTCGTCCTTCTGATTCAAGCTGGATTTTAGGTAACGTG 780
Query 1118 TGGTCTATACTAGCGAAGTCTCCCTTCACTTGCCGGAGGGAGTGGGTTAAGATCATCAGT 1177
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 TGGTCTATACTAGCGAAGTCTCCCTTCACTTGCCGAAGGGAGTGGGTTAAGATCATCAGT 840
Query 1178 GGTACTGAGGAAGCTTATTTTGGATGGACCGCCCTTAATTACCAAACAAGTATGTTGGGA 1237
||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||
Sbjct 841 GGTACAGAGGAAGCTTATTTTGGATGGACCGCTCTTAACTACCAAACAAGCATGTTAGGA 900
Query 1238 GCCCTACCAAAGAAGGCAACATTTGGTGCACTTGACTTAGGTGGCTCATCATTGCAGGTA 1297
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 GCCCTACCAAAGAAGGCAACATTTGGTGCACTTGATTTAGGTGGCTCATCATTGCAGGTA 960
Query 1298 ACCTTTGAGAATGAGGAGCGGACGCATAATGAGACCAACCTAAATCTCAGAATTGGGTCT 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ACCTTTGAGAATGAGGAGCGGACGCATAATGAGACCAACCTAAATCTCAGAATTGGGTCT 1020
Query 1358 GTTAACCATCATCTTAGTGCATATTCTCTTGCCGGATATGGTCTTAATGATGCGTTTGAT 1417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTTAACCATCATCTTAGTGCATATTCTCTTGCCGGATATGGTCTTAATGATGCGTTTGAA 1080
Query 1418 AGGTCTGTTGTTCATCTTTTAAAGAAGCTACCAAATGTCAACAAATCTGATTTGATTGAA 1477
|| |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1081 AGATCTGTTTTTCATCTTTTAAAGAGGCTACCAAATGTCAATAAATCTGATTTGATTGAA 1140
Query 1478 GGAAAATTGGAAATGAAACACCCGTGCTTAAATTCTGGATACAATGGACAGTACATATGT 1537
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1141 GGAAAATTGGAAATGAAACATCCTTGCTTAAATTCTGGATACAATGGACAGTACATATGT 1200
Query 1538 TCTCAGTGTGCTTCCAGTGTCCAAGGAGGTAAAAAAGGAAAGTCAGGAGTTTCTATCAAG 1597
||||| |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 1201 TCTCAATGTGCTTCCAGTGTCCAAGGAGGTAAGAAAGGGAAGTCAGGAGTTCCTATCAAG 1260
Query 1598 CTCGTTGGTGCTCCAAACTGGGGAGAGTGCAGCGCACTTGCAAAAAATGCTGTAAATAGC 1657
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1261 CTCGTTGGTGCTCCAAACTGGGGAGAATGCAGCGCACTGGCAAAAAATGCTGTAAATAGC 1320
Query 1658 TCTGAATGGTCAAACGCAAAACATGGAGTTGATTGTGATTTGCAGCCTTGTGCTCTTCCT 1717
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TCTGAATGGTCAAACACAAAACATGGAGTTGATTGTGATTTGCAGCCTTGTGCTCTTCCT 1380
Query 1718 GATGGTTACCCTCGTCCTCATGGTCAGTTCTATGCTGTATCCGGATTCTTCGTGGTGTAC 1777
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1381 GATGGTTACCCTCGTCCTCATGGTCAGTTCTATGCTGTATCTGGATTCTTCGTGGTGTAC 1440
Query 1778 CGTTTTTTCAACTTAAGTGCTGAAGCATCCCTTGATGATGTATTGGAAAAGGGTAGGGAA 1837
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1441 CGTTTTTTCAACTTAAGTGCTGAAGCTTCCCTTGATGATGTCTTGGAAAAGGGTAGGGAA 1500
Query 1838 TTTTGTGACAAGGCTTGGCAAGTAGCCAGAACCAGTGTTTCTCCACAACCCTTCATTGAA 1897
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TTTTGTGAAAAGGCATGGCAAGTAGCCAGAACCAGTGTTTCTCCACAACCCTTCATTGAA 1560
Query 1898 CAGTACTGCTTTAGAGCGCCATACATAGTCTCCCTGTTACGAGAAGGTTTATATATTACA 1957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 CAGTACTGCTTTAGAGCGCCATACATAGTCTCCCTGTTACGAGAAGGTTTATATATTACA 1620
Query 1958 GATAAGCAAATCATAATTGGGTCTGGGAGTATAACTTGGACACTTGGAGTAGCTCTTCTG 2017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1621 GATAAGCAAATCATAATTGGGTCTGGGAGTATAACTTGGACACTTGGAGTAGCTCTTTTG 1680
Query 2018 GAATCGGGGAAGGCTCTATCTTCTACATTGGGACTGAAGAGCTATGAGACTCTGAGCATG 2077
||| | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1681 GAAGCAGGGAAGGCTTTATCTTCTACATTGGGACTAAAGAGCTATGAGACTCTGAGCATG 1740
Query 2078 AAGATAAACCCAATTGCCCTTATATCTATCTTGATCTTGTCACTGCTTCTGCTTCTCTGT 2137
|| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1741 AAAATAAACCCAATTGCCCTTATATCTATCTTGCTCTTCTCACTGCTTCTGCTTCTCTGT 1800
Query 2138 GCACTATCACGTGTCAGCAATTGTTTGCCAAGATTCTTTAGAAAGTCATATCTCCCACTT 2197
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1801 GCACTTTCACGCGTCAGCAATTGTTTGCCAAGATTCTTTAGAAAGTCGTATCTCCCACTT 1860
Query 2198 TTTAGACACAATAGCACCTCAGCTTCGTCTGTTCTTAACATCCCGTCTCCCTTCAGATTC 2257
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1861 TTTAGACACAATAGCGCCTCAGCTTCGTCTGTTCTTAACATCCCGTCTCCATTCAGATTC 1920
Query 2258 CAGCGATGGAGTCCTATGAGTACAGGGGTAAAGACACCATTGAGTCCAACAGTTCGGGGA 2317
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1921 CAGCGATGGAGTCCTATGAGTACAGGGGTAAAGACACCGTTGAGTCCAACAGTTCGGGGA 1980
Query 2318 TCACCGCGTAGGCCATTTAGTTTTGGAAGCAGCATCCAGCTCATGGAATCTTC---ATTG 2374
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1981 TCACCGCGTAGGCCATTTAGTTTTGGAAGCAGCATACAGCTCATGGAATCTTCTTCATTG 2040
Query 2375 TACTCATCGAGTAGCTGCGTTATGCATAGTTGTTCTTCTGATAGCTTAGGGGATATACAA 2434
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2041 TACTCATCGAGCAGCTGCGTTATGCATAGTTGTTCTTCTGATAGCTTAGGGGATATGCAA 2100
Query 2435 TATGACAGTACTGGTTCCTTCTGGTCCTCCCCTCGCAGGAGTCAAATGCGTCTCCAAAGC 2494
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 TATGACAGCACTAGTTCCTTCTGGTCCTCCCCTCGCAGGAGTCAAATGCGTCTCCAAAGC 2160
Query 2495 CGAAGATCGCAATCTCGAGAAGATCTTAGTTCATCGCTCGCTGATTCACACATGCTCAAA 2554
|| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2161 CGGAGATCGCAATCTCGAGAAGATCTTAGTTCGTCACTCGCTGATTCACACATGCTCAAG 2220
Query 2555 ATGTAGGAGAA-A-TTTTT-GGTACGGCTTTTGTCACTTCCACACCAGCCTAATTTTT-T 2610
||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||| |
Sbjct 2221 ATGTAGGAGAAGAATTTTTTGGTACGGCTTTTGTCACTTCCACACCCTCCTAATTTTTCT 2280
Query 2611 CTATTTTCC-GGTTATGAGAATCACAATATAGAAAGGaaaaaaaTGGGAAAACTTCATGA 2669
|| |||| ||| |||||||||| | |||| ||| ||||||| ||||||| |||||||
Sbjct 2281 CTTTTTTTTTGGTCATGAGAATCATAGTATA-AAA--AAAAAAAGGGGAAAATTTCATGA 2337
Query 2670 GCAAAAATTTCCTTGTTTCAGTTGACATGTAATTCTTTCTATATACCATATACTTATATA 2729
|||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 2338 GCAAAA-TTTCCTTGTTTCAGTTGACATGTAATTCTTT-T-TATACCATATACTTATATA 2394
Query 2730 TGATTACTAATTTAACCTCAGTTC 2753
||||||||||||||||||||||||
Sbjct 2395 TGATTACTAATTTAACCTCAGTTC 2418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103872098115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5