BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19185.1 Length=1539 Score E Sequences producing significant alignments: (Bits) Value Ahg492931 jgi|Araly1|492931|fgenesh2_kg.7__2364__AT4G19185.1 2222 0.0 Ahg494442 jgi|Araly1|494442|fgenesh2_kg.8__258__AT5G45370.2 776 0.0 > Ahg492931 jgi|Araly1|492931|fgenesh2_kg.7__2364__AT4G19185.1 Length=1425 Score = 2222 bits (1203), Expect = 0.0 Identities = 1331/1391 (96%), Gaps = 15/1391 (1%) Strand=Plus/Plus Query 40 GAAAATTTGCACAGAACCTATAG----GACTCGACAAATAGAAGAAGCAGATTCGTTGCT 95 |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 GAAATTTTGCACAGAACCTATAGAAAAGACTCGACAAATAGAAGAAGCAGATTCGTTGCT 60 Query 96 AACGAAGTAAAGGATCTTACTTTTTTAGTCTTTGCTT--TAGAAATAACTTATAACTACA 153 |||||||||||||||| |||||||| ||||| |||| | ||||||||||| | ||| Sbjct 61 GACGAAGTAAAGGATCTCACTTTTTTGGTCTTCGCTTCATCTAAATAACTTAT-A--ACA 117 Query 154 AGTCAGAGAGGGGCCGAGTAAATCGGAAAGATGACGGCGCCGATGATCCTGACCGGAAGT 213 ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| | Sbjct 118 AGTCAGAGACGGGCTGAGTAAATCGGAAAGATGACGGCGCCGATGATCCTGAGCGGAGGC 177 Query 214 GGATCGGCGGCGGAGAGAGACGCTCGGATGGCGCACACTGCTATGGCGTTTGTTCAGCTC 273 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 178 GGATCGGCAGCGGAGAGAGACGCTCGGATGGCGCACACTGCCATGGCGTTTGTTCAGCTC 237 Query 274 TTTAATGGTGGATACCATGTGATTACTAAAGTAGCTCTTAATGTTGGAGTCAACCAGCTT 333 |||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||| Sbjct 238 TTTAATGGCGGATACCATGTGATTACAAAAGTAGCTCTCAACGTTGGAGTCAACCAGCTT 297 Query 334 GTCTTCTGTGTATGCCGTGATCTTCTTGCTCTCTCTATTCTCGCTCCTCTTGCTTACTTC 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 GTCTTCTGTGTATGCCGTGATCTTCTTGCTCTCTCTATTCTCGCTCCTCTTGCTTACTTC 357 Query 394 CGCGAAAGAAAGATCAGAACTCCAATGAATAAAAGCCTTCTCTTGTCATTCTTCTTTCTG 453 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 CGCGAAAGCAAGATCAGAACTCCAATGAATAAAAGCCTTCTCTTGTCATTCTTCTTTCTG 417 Query 454 GGCTTAGCAGGGGTATTTGGGAACCAGTTGTTATTTCTTATCGGTCTTACATACACAAAT 513 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 418 GGCTTAGCAGGGGTATTTGGGAACCAATTGTTATTTCTCATCGGTCTTACATACACAAAT 477 Query 514 CCCACTTATGCTGCTGCCATTCAACCATCCATCCCGGTCTTCACCTTTCTCTTGGCTGTC 573 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 478 CCAACTTATGCTGCTGCCATTCAACCATCCATCCCGGTCTTTACCTTTCTCTTGGCTGTA 537 Query 574 ATGATGGGTACAGAAAGAGTGAATTTGTTGAGAATCGAAGGTCAAACTAAGGTTGGAGGC 633 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 ATGATGGGTACAGAAAGAGTGAATTTGTTGAGAATCGAAGGTCAAACTAAGGTTGGAGGC 597 Query 634 ACACTTGTGTGTGTTATGGGTGCTGTCTTCATGGTTGTATTTCGAGGTCCGGCCTTGTTA 693 ||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||| Sbjct 598 ACACTTGTGTGTGTTATGGGTGCCGTCTTTATGGTTCTATTTCGAGGTCCAGCCTTGTTA 657 Query 694 GGAGATAAAGATGCAGACTTTGCGATGAACAATGAAATCAGTGCTAAAGGTCAACCTGAG 753 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 GGAGATAAAGATGCAGACTTTGCGATGAACAATGAAATCAGTGCTAAAGGTCAACCTGAG 717 Query 754 CCTACTGGTTGGTTAGTCTCTGGTTTTCTCGATCTTGGATTTGAGCA-ATGGCACATTGG 812 |||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 718 CCTACTGGGTGGTTAGTCTCTGGTTTTCTCGATCTTGGATTTGAG-ACATGGCACATTGG 776 Query 813 AGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGGCGCC 872 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 AGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGGCGCC 836 Query 873 ACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTATCATACTTCTTTGGCAC 932 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 837 ACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTGTCATACTTCTTTGGTAC 896 Query 933 AGTACTAATGTGCACAACAGCTTTCTTTATGGTAAAGGAGCCATTGGATTGGAAGCTAAC 992 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 897 AGTACTAATGTGCACAACAGCTTTCTTTATGGTAAAGGAGCCATTGGATTGGAGGCTAAC 956 Query 993 ACAATCTGAGGTTCTTGCAGTTATATATGCAGGAGTTATCGCATCAGCACTAAACTATGG 1052 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 957 ACAATCTGAGGTTCTTGCAGTTATATATGCAGGAGTTATCGCGTCAGCACTAAACTATGG 1016 Query 1053 ACTCTTGACTTGGTCCAATAAGATTATTGGTCCTGCCTTGGTTGCTCTCTACAATCCTCT 1112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 ACTCTTGACTTGGTCCAATAAGATTATTGGTCCTGCCTTGGTTGCTCTCTACAATCCTCT 1076 Query 1113 TCAACCCGCTGCATCAGCTTTCCTATCGAGAATCTTTCTCGGTAGCCCCATTTATCTCGG 1172 ||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1077 TCAGCCTGCTGCATCAGCGTTCCTATCGAGAATCTTTCTCGGTAGCCCTATTTATCTCGG 1136 Query 1173 AAGCGTTGTGGGTGGATTCTTCATCATTCTAGGACTCTATATGGTCACTTGGGCATCGTT 1232 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1137 AAGTGTTGTGGGTGGATTCTTCATCATTCTAGGACTCTATATGGTCACTTGGGCATCATT 1196 Query 1233 TAGAGAGCGAAAAACAGCGGTTTCCGGGATTGGGATTGCGCCCCATGGTCTAAAAACCTC 1292 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1197 TAGAGAGCGAAAAACAGCGGTTTCCGGGATTGGGATTGCGTCTCATGGTCTAAAAACCTC 1256 Query 1293 AGAGCCTCTGATATTTAATGGGACAGTTAACAGACTAGGACAGTTGTTTTCTGGATTACC 1352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 AGAGCCTCTGATATTTAATGGGACAGTTAACAGACTAGGACAGTTGTTTTCTGGATTACC 1316 Query 1353 CAGTTCCTCTGTGAAATCTGCAGACTAAAAAGATACCAAAA-A-GTTAAGATTCAGACGA 1410 ||||||||||||||||||||||||||||| | | ||||||| | ||||||||| |||| | Sbjct 1317 CAGTTCCTCTGTGAAATCTGCAGACTAAAGA-A-ACCAAAAGAAGTTAAGATTGAGACCA 1374 Query 1411 GATCCCATTTT 1421 || |||||||| Sbjct 1375 GAACCCATTTT 1385 Score = 75.0 bits (40), Expect = 2e-12 Identities = 42/43 (98%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 1436 TTTTTGTTAACTTTCATCTCTTATTAATATCTTCTTCGATTAC 1478 |||||||||||||||||||||||||||||||||||| |||||| Sbjct 1383 TTTTTGTTAACTTTCATCTCTTATTAATATCTTCTTTGATTAC 1425 > Ahg494442 jgi|Araly1|494442|fgenesh2_kg.8__258__AT5G45370.2 Length=1319 Score = 776 bits (420), Expect = 0.0 Identities = 890/1112 (80%), Gaps = 51/1112 (5%) Strand=Plus/Plus Query 220 GCGGCGGAGAGAGACGCTCGGATGGCGCACACTGCTATGGCGTTTGTTCAGCTCTTTAAT 279 ||| |||||||||| | || ||||| ||| |||| ||| | || |||||| || | ||| Sbjct 124 GCGACGGAGAGAGAAACACGAATGGCTCACTCTGCAATGACATTGGTTCAGGTCATAAAT 183 Query 280 GGTGGATACCATGTGATTACTAAAGTAGCTCTTAATGTTGGAGTCAACCAGCTTGTCTTC 339 || || ||||||||| |||| |||||||||||||| ||||| || || ||||| ||||| Sbjct 184 GGAGGTTACCATGTGGTTACGAAAGTAGCTCTTAACGTTGGTGTAAATCAGCTCGTCTTT 243 Query 340 TGTGTATGCCGTGATCTTCTTGCTCTCTCTATTCTCGCTCCTCTTGCTTACTTCCGCGAA 399 ||||| | || ||||||||||||||||| |||||||| ||||| |||| ||||||||| Sbjct 244 TGTGTCTTTCGCGATCTTCTTGCTCTCTCCATTCTCGCACCTCTCGCTTTTTTCCGCGAA 303 Query 400 AGAAAGATCAGAACTCCAATGAATAAAAGCCTTC-TCTTGTCATTCTTCTTTCTGGGCTT 458 |||| ||||||| |||| ||||||| ||| | || |||| ||| |||||||||| || || Sbjct 304 AGAAGGATCAGACCTCCTATGAATAGAAG-CGTCTTCTTTTCACTCTTCTTTCTTGGTTT 362 Query 459 AGCAGGGGTATTTGGGAACCAGTTGTTATTTCTTATCGGTCTTA-CATACACAAATCCCA 517 ||||||| |||||||||||||||| |||||||||| ||| ||| | ||||| ||||| | Sbjct 363 AGCAGGGATATTTGGGAACCAGTTACTATTTCTTATGGGT-TTATCGTACACGAATCCAA 421 Query 518 CTTATGCTGCTGCCATTCAACCATCCATCCCGGTCTTCACCTTTCTCTTGGCTGTCATGA 577 ||||||| || || || |||||||| ||||| ||||| || ||||||||||||||||||| Sbjct 422 CTTATGCCGCAGCTATACAACCATCAATCCCAGTCTTTACATTTCTCTTGGCTGTCATGA 481 Query 578 TGGGTACAGAAAGAGTGAATTTGTTGAGAATCGAAGGTCAAACTAAGGTTGGAGGCACAC 637 |||||||||||| |||||| ||||| | |||||| || ||||| || |||||||| || | Sbjct 482 TGGGTACAGAAAAAGTGAACTTGTTTAAAATCGAGGGCCAAACGAAAGTTGGAGGTACTC 541 Query 638 TTGTGTGTGTTAT-GGGTGCTGTCTTCA-TGG-TTGTATTTCGAGGTCCGGCCTTGTTAG 694 |||| |||||| | |||||| || || ||| || | || || ||||| |||||||| | Sbjct 542 TTGTTTGTGTT-TCGGGTGCCGTGG-CAATGGCTT-TGTTCCGTGGTCCAGCCTTGTTTG 598 Query 695 GAGATAAAGATGCAG-ACTTTGC-GATGAACAA-TGAAATCAGTGCTA-AAGGTCAACCT 750 ||| ||| ||||||| | || | | |||| || || ||| | || || ||| |||||| Sbjct 599 GAGGTAATGATGCAGTAGATT-CAG-TGAA-AAGTGTAATAATTGATAGAAG-TCAACCA 654 Query 751 GAGCCTACTGGTTGGTTAGTCTCTGGTTTTCTCGA-TCTTGGATTTGAGCAATGGCACAT 809 ||| ||| ||| |||||||||||| ||||||| | | |||| ||||| | ||||||||| Sbjct 655 GAGACTAATGGGTGGTTAGTCTCTAGTTTTCTTGGGT-TTGGGTTTGATCTATGGCACAT 713 Query 810 TGGAGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGGC 869 ||||||| |||||||||| ||||| || |||||||||||| ||||||| || | || || Sbjct 714 TGGAGTTATATGCTTGATAGGAAATTGTATGTGTATGGCTGCTTTTCTCGCTGTCCAAGC 773 Query 870 GCCACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTAT-CATACTTCTTTG 928 || |||||||||||||||| || | ||||| |||||||| | || |||||||||| | Sbjct 774 ACCGGTTTTGAAGAAGTATCCTGCCTACCTTTCGGTTGCTGCGT-ATTCATACTTCTTCG 832 Query 929 GCACAGT-ACTAATG-TGCACAACAGCTTTCTT-TATGGTAAAGGAGCC-ATTGGATTGG 984 | || | | ||||| | |||||||||| |||| | || || || |||| | | ||||| Sbjct 833 GTGCA-TCAATAATGAT-CACAACAGCTATCTTGTTTGTTAGAG-AGCCTAAAG-ATTGG 888 Query 985 AAGCT-AACACAATCTGAGGTTCTTGCAGTTATATAT-GCAGGAGT-TATCGCATCAGCA 1041 | ||| |||||||||||| |||||||| ||||||| | |||||||| | | || ||||| Sbjct 889 A-GCTTAACACAATCTGAAGTTCTTGCTGTTATAT-TCGCAGGAGTGTTT-GCGTCAGCT 945 Query 1042 CTAAACTATGGACTCTTGACTTGGTCCAATAAGATTATTGGTCCTGCCTTGGTTGCTCTC 1101 |||||||||||||||||||||||||| ||||| ||| |||| |||| |||||| |||| Sbjct 946 CTAAACTATGGACTCTTGACTTGGTCGAATAAAATTCTTGGAGCTGCTTTGGTTTCTCTA 1005 Query 1102 TACAATCCTCTTCAACCCGCTGCATCAGC-TTTCCTATCGA-GAATCTTTC-TCGGTAGC 1158 |||||||||||||| || || |||| || ||| |||| | || | |||| |||| ||| Sbjct 1006 TACAATCCTCTTCAGCCTGCAACATCCGCCTTTT-TATCAACGA-T-TTTCCTCGGCAGC 1062 Query 1159 CCCATTTATCTCGGAAGCGTTGTGGGTGGATTCTTCATCATTCTA-GGACTCTATATGGT 1217 || || |||||||||||| || |||| ||| || |||||||| | || || |||||||| Sbjct 1063 CCGATCTATCTCGGAAGCATTTTGGGCGGAATCCTCATCATT-TGCGGGCTTTATATGGT 1121 Query 1218 CACTTGGGCATCGTT-TAGAGAGCGAA-AAACAGCGGTTTCCGGGATTGGGATTGCGCCC 1275 ||||||||||| || |||||| | || ||||| | || || |||| || || ||| | Sbjct 1122 TACTTGGGCATC-TTATAGAGAAC-AACAAACAACAGTATCTGGGAATGAGACTGCTTCT 1179 Query 1276 -C-A-TGGTCTAAAAACCTCAGAGCCTCTGAT 1304 | | |||| ||| || |||||| ||| |||| Sbjct 1180 TCTAGTGGTGTAAGAATCTCAGAACCTTTGAT 1211 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57630540685 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5