BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19185.1
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492931 jgi|Araly1|492931|fgenesh2_kg.7__2364__AT4G19185.1 2222 0.0
Ahg494442 jgi|Araly1|494442|fgenesh2_kg.8__258__AT5G45370.2 776 0.0
> Ahg492931 jgi|Araly1|492931|fgenesh2_kg.7__2364__AT4G19185.1
Length=1425
Score = 2222 bits (1203), Expect = 0.0
Identities = 1331/1391 (96%), Gaps = 15/1391 (1%)
Strand=Plus/Plus
Query 40 GAAAATTTGCACAGAACCTATAG----GACTCGACAAATAGAAGAAGCAGATTCGTTGCT 95
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 GAAATTTTGCACAGAACCTATAGAAAAGACTCGACAAATAGAAGAAGCAGATTCGTTGCT 60
Query 96 AACGAAGTAAAGGATCTTACTTTTTTAGTCTTTGCTT--TAGAAATAACTTATAACTACA 153
|||||||||||||||| |||||||| ||||| |||| | ||||||||||| | |||
Sbjct 61 GACGAAGTAAAGGATCTCACTTTTTTGGTCTTCGCTTCATCTAAATAACTTAT-A--ACA 117
Query 154 AGTCAGAGAGGGGCCGAGTAAATCGGAAAGATGACGGCGCCGATGATCCTGACCGGAAGT 213
||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 118 AGTCAGAGACGGGCTGAGTAAATCGGAAAGATGACGGCGCCGATGATCCTGAGCGGAGGC 177
Query 214 GGATCGGCGGCGGAGAGAGACGCTCGGATGGCGCACACTGCTATGGCGTTTGTTCAGCTC 273
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 178 GGATCGGCAGCGGAGAGAGACGCTCGGATGGCGCACACTGCCATGGCGTTTGTTCAGCTC 237
Query 274 TTTAATGGTGGATACCATGTGATTACTAAAGTAGCTCTTAATGTTGGAGTCAACCAGCTT 333
|||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 238 TTTAATGGCGGATACCATGTGATTACAAAAGTAGCTCTCAACGTTGGAGTCAACCAGCTT 297
Query 334 GTCTTCTGTGTATGCCGTGATCTTCTTGCTCTCTCTATTCTCGCTCCTCTTGCTTACTTC 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GTCTTCTGTGTATGCCGTGATCTTCTTGCTCTCTCTATTCTCGCTCCTCTTGCTTACTTC 357
Query 394 CGCGAAAGAAAGATCAGAACTCCAATGAATAAAAGCCTTCTCTTGTCATTCTTCTTTCTG 453
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CGCGAAAGCAAGATCAGAACTCCAATGAATAAAAGCCTTCTCTTGTCATTCTTCTTTCTG 417
Query 454 GGCTTAGCAGGGGTATTTGGGAACCAGTTGTTATTTCTTATCGGTCTTACATACACAAAT 513
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 418 GGCTTAGCAGGGGTATTTGGGAACCAATTGTTATTTCTCATCGGTCTTACATACACAAAT 477
Query 514 CCCACTTATGCTGCTGCCATTCAACCATCCATCCCGGTCTTCACCTTTCTCTTGGCTGTC 573
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 478 CCAACTTATGCTGCTGCCATTCAACCATCCATCCCGGTCTTTACCTTTCTCTTGGCTGTA 537
Query 574 ATGATGGGTACAGAAAGAGTGAATTTGTTGAGAATCGAAGGTCAAACTAAGGTTGGAGGC 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATGATGGGTACAGAAAGAGTGAATTTGTTGAGAATCGAAGGTCAAACTAAGGTTGGAGGC 597
Query 634 ACACTTGTGTGTGTTATGGGTGCTGTCTTCATGGTTGTATTTCGAGGTCCGGCCTTGTTA 693
||||||||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||
Sbjct 598 ACACTTGTGTGTGTTATGGGTGCCGTCTTTATGGTTCTATTTCGAGGTCCAGCCTTGTTA 657
Query 694 GGAGATAAAGATGCAGACTTTGCGATGAACAATGAAATCAGTGCTAAAGGTCAACCTGAG 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGAGATAAAGATGCAGACTTTGCGATGAACAATGAAATCAGTGCTAAAGGTCAACCTGAG 717
Query 754 CCTACTGGTTGGTTAGTCTCTGGTTTTCTCGATCTTGGATTTGAGCA-ATGGCACATTGG 812
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 718 CCTACTGGGTGGTTAGTCTCTGGTTTTCTCGATCTTGGATTTGAG-ACATGGCACATTGG 776
Query 813 AGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGGCGCC 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGGCGCC 836
Query 873 ACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTATCATACTTCTTTGGCAC 932
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 837 ACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTGTCATACTTCTTTGGTAC 896
Query 933 AGTACTAATGTGCACAACAGCTTTCTTTATGGTAAAGGAGCCATTGGATTGGAAGCTAAC 992
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 897 AGTACTAATGTGCACAACAGCTTTCTTTATGGTAAAGGAGCCATTGGATTGGAGGCTAAC 956
Query 993 ACAATCTGAGGTTCTTGCAGTTATATATGCAGGAGTTATCGCATCAGCACTAAACTATGG 1052
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 ACAATCTGAGGTTCTTGCAGTTATATATGCAGGAGTTATCGCGTCAGCACTAAACTATGG 1016
Query 1053 ACTCTTGACTTGGTCCAATAAGATTATTGGTCCTGCCTTGGTTGCTCTCTACAATCCTCT 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 ACTCTTGACTTGGTCCAATAAGATTATTGGTCCTGCCTTGGTTGCTCTCTACAATCCTCT 1076
Query 1113 TCAACCCGCTGCATCAGCTTTCCTATCGAGAATCTTTCTCGGTAGCCCCATTTATCTCGG 1172
||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1077 TCAGCCTGCTGCATCAGCGTTCCTATCGAGAATCTTTCTCGGTAGCCCTATTTATCTCGG 1136
Query 1173 AAGCGTTGTGGGTGGATTCTTCATCATTCTAGGACTCTATATGGTCACTTGGGCATCGTT 1232
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1137 AAGTGTTGTGGGTGGATTCTTCATCATTCTAGGACTCTATATGGTCACTTGGGCATCATT 1196
Query 1233 TAGAGAGCGAAAAACAGCGGTTTCCGGGATTGGGATTGCGCCCCATGGTCTAAAAACCTC 1292
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1197 TAGAGAGCGAAAAACAGCGGTTTCCGGGATTGGGATTGCGTCTCATGGTCTAAAAACCTC 1256
Query 1293 AGAGCCTCTGATATTTAATGGGACAGTTAACAGACTAGGACAGTTGTTTTCTGGATTACC 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGAGCCTCTGATATTTAATGGGACAGTTAACAGACTAGGACAGTTGTTTTCTGGATTACC 1316
Query 1353 CAGTTCCTCTGTGAAATCTGCAGACTAAAAAGATACCAAAA-A-GTTAAGATTCAGACGA 1410
||||||||||||||||||||||||||||| | | ||||||| | ||||||||| |||| |
Sbjct 1317 CAGTTCCTCTGTGAAATCTGCAGACTAAAGA-A-ACCAAAAGAAGTTAAGATTGAGACCA 1374
Query 1411 GATCCCATTTT 1421
|| ||||||||
Sbjct 1375 GAACCCATTTT 1385
Score = 75.0 bits (40), Expect = 2e-12
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1436 TTTTTGTTAACTTTCATCTCTTATTAATATCTTCTTCGATTAC 1478
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1383 TTTTTGTTAACTTTCATCTCTTATTAATATCTTCTTTGATTAC 1425
> Ahg494442 jgi|Araly1|494442|fgenesh2_kg.8__258__AT5G45370.2
Length=1319
Score = 776 bits (420), Expect = 0.0
Identities = 890/1112 (80%), Gaps = 51/1112 (5%)
Strand=Plus/Plus
Query 220 GCGGCGGAGAGAGACGCTCGGATGGCGCACACTGCTATGGCGTTTGTTCAGCTCTTTAAT 279
||| |||||||||| | || ||||| ||| |||| ||| | || |||||| || | |||
Sbjct 124 GCGACGGAGAGAGAAACACGAATGGCTCACTCTGCAATGACATTGGTTCAGGTCATAAAT 183
Query 280 GGTGGATACCATGTGATTACTAAAGTAGCTCTTAATGTTGGAGTCAACCAGCTTGTCTTC 339
|| || ||||||||| |||| |||||||||||||| ||||| || || ||||| |||||
Sbjct 184 GGAGGTTACCATGTGGTTACGAAAGTAGCTCTTAACGTTGGTGTAAATCAGCTCGTCTTT 243
Query 340 TGTGTATGCCGTGATCTTCTTGCTCTCTCTATTCTCGCTCCTCTTGCTTACTTCCGCGAA 399
||||| | || ||||||||||||||||| |||||||| ||||| |||| |||||||||
Sbjct 244 TGTGTCTTTCGCGATCTTCTTGCTCTCTCCATTCTCGCACCTCTCGCTTTTTTCCGCGAA 303
Query 400 AGAAAGATCAGAACTCCAATGAATAAAAGCCTTC-TCTTGTCATTCTTCTTTCTGGGCTT 458
|||| ||||||| |||| ||||||| ||| | || |||| ||| |||||||||| || ||
Sbjct 304 AGAAGGATCAGACCTCCTATGAATAGAAG-CGTCTTCTTTTCACTCTTCTTTCTTGGTTT 362
Query 459 AGCAGGGGTATTTGGGAACCAGTTGTTATTTCTTATCGGTCTTA-CATACACAAATCCCA 517
||||||| |||||||||||||||| |||||||||| ||| ||| | ||||| ||||| |
Sbjct 363 AGCAGGGATATTTGGGAACCAGTTACTATTTCTTATGGGT-TTATCGTACACGAATCCAA 421
Query 518 CTTATGCTGCTGCCATTCAACCATCCATCCCGGTCTTCACCTTTCTCTTGGCTGTCATGA 577
||||||| || || || |||||||| ||||| ||||| || |||||||||||||||||||
Sbjct 422 CTTATGCCGCAGCTATACAACCATCAATCCCAGTCTTTACATTTCTCTTGGCTGTCATGA 481
Query 578 TGGGTACAGAAAGAGTGAATTTGTTGAGAATCGAAGGTCAAACTAAGGTTGGAGGCACAC 637
|||||||||||| |||||| ||||| | |||||| || ||||| || |||||||| || |
Sbjct 482 TGGGTACAGAAAAAGTGAACTTGTTTAAAATCGAGGGCCAAACGAAAGTTGGAGGTACTC 541
Query 638 TTGTGTGTGTTAT-GGGTGCTGTCTTCA-TGG-TTGTATTTCGAGGTCCGGCCTTGTTAG 694
|||| |||||| | |||||| || || ||| || | || || ||||| |||||||| |
Sbjct 542 TTGTTTGTGTT-TCGGGTGCCGTGG-CAATGGCTT-TGTTCCGTGGTCCAGCCTTGTTTG 598
Query 695 GAGATAAAGATGCAG-ACTTTGC-GATGAACAA-TGAAATCAGTGCTA-AAGGTCAACCT 750
||| ||| ||||||| | || | | |||| || || ||| | || || ||| ||||||
Sbjct 599 GAGGTAATGATGCAGTAGATT-CAG-TGAA-AAGTGTAATAATTGATAGAAG-TCAACCA 654
Query 751 GAGCCTACTGGTTGGTTAGTCTCTGGTTTTCTCGA-TCTTGGATTTGAGCAATGGCACAT 809
||| ||| ||| |||||||||||| ||||||| | | |||| ||||| | |||||||||
Sbjct 655 GAGACTAATGGGTGGTTAGTCTCTAGTTTTCTTGGGT-TTGGGTTTGATCTATGGCACAT 713
Query 810 TGGAGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGGC 869
||||||| |||||||||| ||||| || |||||||||||| ||||||| || | || ||
Sbjct 714 TGGAGTTATATGCTTGATAGGAAATTGTATGTGTATGGCTGCTTTTCTCGCTGTCCAAGC 773
Query 870 GCCACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTAT-CATACTTCTTTG 928
|| |||||||||||||||| || | ||||| |||||||| | || |||||||||| |
Sbjct 774 ACCGGTTTTGAAGAAGTATCCTGCCTACCTTTCGGTTGCTGCGT-ATTCATACTTCTTCG 832
Query 929 GCACAGT-ACTAATG-TGCACAACAGCTTTCTT-TATGGTAAAGGAGCC-ATTGGATTGG 984
| || | | ||||| | |||||||||| |||| | || || || |||| | | |||||
Sbjct 833 GTGCA-TCAATAATGAT-CACAACAGCTATCTTGTTTGTTAGAG-AGCCTAAAG-ATTGG 888
Query 985 AAGCT-AACACAATCTGAGGTTCTTGCAGTTATATAT-GCAGGAGT-TATCGCATCAGCA 1041
| ||| |||||||||||| |||||||| ||||||| | |||||||| | | || |||||
Sbjct 889 A-GCTTAACACAATCTGAAGTTCTTGCTGTTATAT-TCGCAGGAGTGTTT-GCGTCAGCT 945
Query 1042 CTAAACTATGGACTCTTGACTTGGTCCAATAAGATTATTGGTCCTGCCTTGGTTGCTCTC 1101
|||||||||||||||||||||||||| ||||| ||| |||| |||| |||||| ||||
Sbjct 946 CTAAACTATGGACTCTTGACTTGGTCGAATAAAATTCTTGGAGCTGCTTTGGTTTCTCTA 1005
Query 1102 TACAATCCTCTTCAACCCGCTGCATCAGC-TTTCCTATCGA-GAATCTTTC-TCGGTAGC 1158
|||||||||||||| || || |||| || ||| |||| | || | |||| |||| |||
Sbjct 1006 TACAATCCTCTTCAGCCTGCAACATCCGCCTTTT-TATCAACGA-T-TTTCCTCGGCAGC 1062
Query 1159 CCCATTTATCTCGGAAGCGTTGTGGGTGGATTCTTCATCATTCTA-GGACTCTATATGGT 1217
|| || |||||||||||| || |||| ||| || |||||||| | || || ||||||||
Sbjct 1063 CCGATCTATCTCGGAAGCATTTTGGGCGGAATCCTCATCATT-TGCGGGCTTTATATGGT 1121
Query 1218 CACTTGGGCATCGTT-TAGAGAGCGAA-AAACAGCGGTTTCCGGGATTGGGATTGCGCCC 1275
||||||||||| || |||||| | || ||||| | || || |||| || || ||| |
Sbjct 1122 TACTTGGGCATC-TTATAGAGAAC-AACAAACAACAGTATCTGGGAATGAGACTGCTTCT 1179
Query 1276 -C-A-TGGTCTAAAAACCTCAGAGCCTCTGAT 1304
| | |||| ||| || |||||| ||| ||||
Sbjct 1180 TCTAGTGGTGTAAGAATCTCAGAACCTTTGAT 1211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5