BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19191.1
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329616 jgi|Araly1|329616|fgenesh1_pm.C_scaffold_7001843 2867 0.0
Ahg929131 jgi|Araly1|929131|scaffold_301588.1 54.7 3e-06
> Ahg329616 jgi|Araly1|329616|fgenesh1_pm.C_scaffold_7001843
Length=3756
Score = 2867 bits (1552), Expect = 0.0
Identities = 1838/1976 (93%), Gaps = 19/1976 (1%)
Strand=Plus/Plus
Query 1 ATGTCCTTGATTCACCGACGGCTATA-TCGTATAT-CTGGATTATCGTCTGTTAATGCTT 58
|||||||||||||| || ||| || | | || | | ||||||| ||||||||||||||||
Sbjct 1789 ATGTCCTTGATTCATCGTCGGTTAAAGT-GT-TTTCCTGGATTGTCGTCTGTTAATGCTT 1846
Query 59 GGAA-TTTGC-AGATACGAGAAGCGGTTAATAGAAATGATCCGGTGGAATCACTTCTTCT 116
|||| ||| | || |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1847 GGAACTTT-CAAG-TACGTGAAGCGGTTAATCGAAATGATCCGGTGGAATCACTTCTTCT 1904
Query 117 GTTTCGAGAAATGAAGCGCGGAGGATTTGAACCGAACAACTTTACTTTTCCATTTGTGGC 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 GTTTCGAGAAATGAAGCGCGGAGGATTTGAACCGAACAACTTTACTTTTCCATTTGTGGC 1964
Query 177 GAAGGCGTGTGCTAGGCTCGCTGATGTTGGGTGCTGTGAGATGGTTCATGCACATTTGAT 236
|||||||||||||||||||||| || |||||| |||||||||||||||| | ||||||||
Sbjct 1965 GAAGGCGTGTGCTAGGCTCGCTTATATTGGGTACTGTGAGATGGTTCATACCCATTTGAT 2024
Query 237 AAAGTCTCCGTTTTGGTCTGATGTGTTCGTTGGGACAGCGACGGTTGACATGTTTGTGAA 296
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 2025 AAAGTCTCCGTTTTGGTCTGATGTTTTCGTTGGGACAGCGACGGTTGATATGTTTGTAAA 2084
Query 297 ATGTAATTCTGTGGATTATGCCGCCAAGGTGTTTGAGAGAATGCCTGAGAGAGATGCTAC 356
|||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2085 ATGTGATTCTCTGGATTATGCCGCCAAGGTGTTTGAGAGAATGCCTGTGAGAGATGCTAC 2144
Query 357 CACTTGGAACGCAATGCTGTCTGGTTTCTGTCAGTCGGGTCACACGGATAAGGCGTTTTC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2145 CACTTGGAACGCAATGCTGTCTGGTTTCTGTCAGTCGGGTCACACGGATAAGGTGTTTTC 2204
Query 417 -TCTATTTCGTGAAATGAGACTCAACGAGATTACACCTGATTCTGTGACTGTTATGACCT 475
| |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct 2205 AT-TATTTCGTGAAATGAGGCTCGACGAGATCCCACCTGATTCTGTGACTGTTATGACCT 2263
Query 476 TGATTCAATCTGCATCGTTTGAAAAAAGTTTGAAGCTTTTGGAGG-CTATGCATGCGGTT 534
||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| ||
Sbjct 2264 TGATTCAATCTGCATCGTTTGAAAAAAGTTTGAAGCTTTTGAAGGTC-ATGCATGCTTTT 2322
Query 535 GGGATACGTTTAGGTGTAGATGTACAAGTTACAGTTGCCAATACTTGGATTTCTACTTAT 594
||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| |||||
Sbjct 2323 GGGATACGTTTAGGTGTAGATTTACAAGCTACAGTTTCCAATACTTGGATTTCTGCTTAT 2382
Query 595 GGGAAATGTGGTGATTTGGATTCAGCAAAGTTGGTTTTCGAAGCTATTGACAGAGGTGAC 654
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2383 GGGAAATGTGGTGATTTGGATTCAGCAAAGTTAGTTTTCGAAGCTATTGACAGAGGTGAC 2442
Query 655 AGAACTGTTGTGTCTTGGAATTCTATGTTCAAAGCATATT-CAGTTTTTGGTGAAGCATT 713
|||||||||||||||||||| ||| |||||||||||| || |||||||||||||||||||
Sbjct 2443 AGAACTGTTGTGTCTTGGAACTCTGTGTTCAAAGCAT-TTGCAGTTTTTGGTGAAGCATT 2501
Query 714 TGATGCTTTTGGTCTTTACTGTTTGATGCTGCGTGAAGAGTTTAAGCCGGATTTGAGTAC 773
|||||||||||||| ||| | || ||||||||||| |||||||||||||||||||| ||
Sbjct 2502 TGATGCTTTTGGTCACTACCGGTTAATGCTGCGTGATGAGTTTAAGCCGGATTTGAGCAC 2561
Query 774 GTTTATTAACTTGGCTGCATCGTGTCAGAACCCTGAAACACTAACACAAGGAAGATTGAT 833
|||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct 2562 CTTTATTAACTTGGCTGCATCGTGTCAAAACCCTCAAACACTAACCCAAGGAAGATTGAT 2621
Query 834 TCATTCTCATGCAATCCATCTCGGTACAGATCAAGATATAGAAGCGATCAATACCTTTAT 893
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 2622 TCATTCTCATGCAATCCATCTCGGTACAGATCAAGATATCGAAGCGATTAATACCTTCAT 2681
Query 894 TTCTATGTATTCGAAATCCGAGGATACCTGTTCAGCGAGGCTTTTGTTTGACATAATGAC 953
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 2682 TTCTATGTATTCGAAATCCGGGGATTCCTGTTCAGCGAGGCTTTTGTTTGACATAATGCC 2741
Query 954 TTCCAGAACATGTGTTTCTTGGACTGTGATGATAAGCGGGTATGCTGAGAA-GGGCGACA 1012
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| || |
Sbjct 2742 TTCCAGAACATGTGTTTCTTGGACTGTGATGATAAGTGGGTATGCCGAGAAAGGG-GATA 2800
Query 1013 TGGATGAAGCTTTGGCCTTATTTCATGCCATGATCAAATCAGGAGAGAAACCAGATCTAG 1072
|||||||||||||||||||||||||||||||| |||| | |||| ||| |||||| |||
Sbjct 2801 TGGATGAAGCTTTGGCCTTATTTCATGCCATGGCCAAAACTGGAGTGAATCCAGATTTAG 2860
Query 1073 TTACCTTACTCTCCCTCATTTCAGGTTGTGGAAAATTTGGTTCACTTGAGACTGGAAAAT 1132
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 2861 TTACCTTACTCTCCCTCATTTCAGGTTGTGGAAAATTTGGTTCACTGGAGATTGGAAAAT 2920
Query 1133 GGATAGATGCTAGAGCAGATATATATGGGTGCAAGAGAGATAATGTCATGATTTGCAATG 1192
|||| |||| |||||||||||| || || ||||||| ||||||||||||| |||||||||
Sbjct 2921 GGATCGATGGTAGAGCAGATATGTACGGTTGCAAGAAAGATAATGTCATGGTTTGCAATG 2980
Query 1193 CTCTTATTGATATGTACTCAAAATGTGGAAGTATACATGAAGCTCGAGACATATTCGATA 1252
||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 2981 CTCTTATTGATATGTACTCAAAATGTGGAAGTATAGACGAAGCTCGAGACATCTTCGATA 3040
Query 1253 ACACGCCTGAGAAAACTGTTGTCACATGGACTACAATGATAGCTGGATATGCTTTGAACG 1312
||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 3041 ACACGTCTGAGAAAACTATGGTCACATGGACTACAATGATAGCTGGATATGCTTTGAACG 3100
Query 1313 GTATCTTTCTCGAAGCTTTGAAACTTTTTAGCAAGATGATAGATTTGGATTATAAACCAA 1372
| ||||| || |||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 3101 GAATCTTCCTAGAAGCTATGGAACTTTTCAGCAAGATGATAGATTTGGATTATAAACCAA 3160
Query 1373 ACCACATAACATTCCTTGCCGTCCTTCAAGCTTGTGCTCATTCGGGTTCTCTGGAGAAAG 1432
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 3161 ACCACATAACATTCCTTGCCGTCCTTCAAGCTTGTGCTCATTCGGGTTCTCTAGAAAAAG 3220
Query 1433 GTTGGGAGTATTTCCACATCATGAAACAAGTATACAACATCAGCCCTGGACTAGACCATT 1492
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3221 GTTGGGAGTATTTCCACATCATGAAACAAGTATACAACATCAGTCCTGGACTAGACCATT 3280
Query 1493 ACTCTTGTATGGTAGATCTTCTTGGAAGAAAAGGAAAGCTCGAAGAAGCATTAGAACTCA 1552
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3281 ACTCTTGTATGGTAGATCTTCTTGGAAGAAAAGGAAAGCTCGACGAAGCATTAGAACTCA 3340
Query 1553 TCCGTAACATGTCAGCTAAACCCGATGCTGGCATATGGGGTGCATTGCTAAATGCCTGCA 1612
||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 3341 TCCATAACATGTCAGCTAAACCCGATGCTGGCATATGGGGAGCATTGCTTAGTGCCTGCA 3400
Query 1613 AGATCCACCGTAATGTAAAGATAGCTGAGCAAGCCGCTGAGAGTCTTTTTAACTTAGAAC 1672
|||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||
Sbjct 3401 AGATCCACCGTAATGTAAAGATAGCTGAGCAAGCGGCTGACAGTCTCTTTAACTTGGAAC 3460
Query 1673 CGCAAATGGCAGCTCCTTATGTAGAAATGGCAAACATATATGCAGCTGCTGGTATGTGGG 1732
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3461 CGCAAATGGCAGCACCTTATGTAGAAATGTCAAACATATATGCAGCTGCTGGTATGTGGG 3520
Query 1733 ATGGTTTTGCGAGGATTAGATCAATTATGAAACAGAGGAACATTAAGAAGTATCCAGGTG 1792
|||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||
Sbjct 3521 ATGGTTTTGCGAGGATCAGATCAATGATGAAACTCTGGAACATTAAGAAGTATCCAGGTG 3580
Query 1793 AAAGCGTGATCCAGGTAAACGGAAAGAATCACAGTTTCACTGTAGGAGAACATGGTCATG 1852
|||||||||| || || |||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 3581 AAAGCGTGATTCAAGTGAACGGAAAAAATCACACTTTCACTGTAGGAGAACGTGGTCATA 3640
Query 1853 TAGAGAATGAAGTCATATACTTTACGCTGAATGGTTTGAGTTTGTTTGCCAAAGAT-AAA 1911
| |||||||||| |||||||| ||||||||||||||||||||||||||| | |||| |||
Sbjct 3641 TGGAGAATGAAGCCATATACTCTACGCTGAATGGTTTGAGTTTGTTTGCGAGAGATGAAA 3700
Query 1912 CACG--TATTGTATAAAGATGTGTACAAAGAACAAAGTTATGAACTTTTCATTTGA 1965
|| ||||| |||||||||||||||||||||| |||||| || |||||||||||
Sbjct 3701 AACAAATATTGCATAAAGATGTGTACAAAGAACAGAGTTATAAAGTTTTCATTTGA 3756
> Ahg929131 jgi|Araly1|929131|scaffold_301588.1
Length=1924
Score = 54.7 bits (29), Expect = 3e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1189 AATGCTCTTATTGATATGTACTCAAAATGTGG 1220
||| ||||||||||||||||||||||||||||
Sbjct 894 AATTCTCTTATTGATATGTACTCAAAATGTGG 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73856985055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5