BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19200.1 Length=974 Score E Sequences producing significant alignments: (Bits) Value Ahg946251 jgi|Araly1|946251|scaffold_702480.1 625 2e-178 Ahg952238 jgi|Araly1|952238|scaffold_48600002.1 300 1e-80 > Ahg946251 jgi|Araly1|946251|scaffold_702480.1 Length=564 Score = 625 bits (338), Expect = 2e-178 Identities = 520/598 (87%), Gaps = 51/598 (9%) Strand=Plus/Plus Query 84 GGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAGCAAGAGAA 143 ||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| || || Sbjct 6 GGTTTTAAGTGAAAAA-CAATGGGAGGTGGTAAAGACAAGCATCATGATGAGCATGACAA 64 Query 144 AGGATTTCATGGTTTTCCAGGAGGTGGACAT--T-ACCCACCTGCTCAAGGAGGTTACCC 200 ||| |||||||||||||||||||| |||||| | ||||||||||||||||||| || || Sbjct 65 AGGGTTTCATGGTTTTCCAGGAGGAGGACATCATTACCCACCTGCTCAAGGAGGGTATCC 124 Query 201 TCCTCAAGGTTACCCACCACAACAAGGGTATCCTCCAGCTGGAGGCTACCCACCTGCCGG 260 ||| |||||||||||||||||| ||||||||||||||||||||||| || ||||| || Sbjct 125 TCCACAAGGTTACCCACCACAA---GGGTATCCTCCAGCTGGAGGCTATCCGCCTGCTGG 181 Query 261 ATATCCTCCTGGTGCTTACCCTGCTGCGCCCGGTGGTTATCCTCCTGCACCTGGAGGTTA 320 ||||||||||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct 182 ATATCCTCCTGGTGCATACCCTGCTGCACCCGGTGGTTATCCTCCTGC---TGG------ 232 Query 321 CCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGGACATTCTGGTGGTGGACT 380 | | ||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 233 C--T----------ATCCTGCACCTGGAGCTCACCATTCAGGACATTCTAGTGGTGGAAT 280 Query 381 CGGAGGCATGATAGCAGGTGCAGCTGGTGCAGCCGCAGCAGCTTATGGAGCTCACCATGT 440 |||||||||||||||||| | |||| |||| ||| || |||||||||||||||| Sbjct 281 CGGAGGCATGATAGCAGG-G--GCTG---CAGC---AGC--CT-ATGGAGCTCACCATGT 328 Query 441 TGGTCACGCCTCTCACAACCCTTACGGGCATGCTGTAGGACATGGAGGGTATGGCCATGC 500 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 329 TGGTCATGCCTCTCACAACCCTTACGGGCATGCTGTAGGACATGGAGGGTATGGCCATGG 388 Query 501 CCCTGCTCATGGCTTTGGCCATGGTGGTCATGGTAAATTCAAGCACGGAAAGCATGGAGG 560 |||||||||||||||||| | |||||||||||| |||||||| |||||||||||||| Sbjct 389 CCCTGCTCATGGCTTTGGTGGTCATGGTCATGGTAAGTTCAAGCATGGAAAGCATGGAGG 448 Query 561 CAAATTCAAGCACGGAAAGCATGGAAAGCA---C--G---GG-AAACATGGCATGTTTGG 611 |||||||||||||||||||||||||||||| | | || |||||||| |||||||| Sbjct 449 CAAATTCAAGCACGGAAAGCATGGAAAGCATGGCAAGCACGGGAAACATGGTATGTTTGG 508 Query 612 AGGAGGAGGCAAATTCAAGAAGTGGAAGTAATCTCAAAAACCCCACCTTTGATCCTCT 669 |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| Sbjct 509 AGGAGGAGGCAAATTCAAGAAGTGGAAGTAATCTCAAAAAACCC-C-TTTGATCCTCT 564 > Ahg952238 jgi|Araly1|952238|scaffold_48600002.1 Length=280 Score = 300 bits (162), Expect = 1e-80 Identities = 239/272 (88%), Gaps = 21/272 (8%) Strand=Plus/Minus Query 358 TCAGGACATTCTGGTGGTGGACTCGGAGGCATGATAGCAGGTGCAGCTGGTGCAGCCGCA 417 |||||||||||| |||||||| ||||||||||||||||||| | || |||| ||| Sbjct 260 TCAGGACATTCTAGTGGTGGAATCGGAGGCATGATAGCAGG-G--GC---TGCA---GCA 210 Query 418 GCAGCTTATGGAGCTCACCATGTTGGTCACGCCTCTCACAACCCTTACGGGCATGCTGTA 477 || | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 209 GC--C-TATGGAGCTCACCATGTTGGTCATGCCTCTCACAACCCTTACGGGCATGCTGTA 153 Query 478 GGACATGGAGGGTATGGCCATGCCCCTGCTCATGGCTTTGGCCATGGTGGTCATGGTAAA 537 |||||||||||||||||||||| |||||||||||||||||| | |||||||||||| Sbjct 152 GGACATGGAGGGTATGGCCATGGCCCTGCTCATGGCTTTGGTGGTCATGGTCATGGTAAG 93 Query 538 TTCAAGCACGGAAAGCATGGAGGCAAATTCAAGCACGGAAAGCATGGAAAGCA---C--G 592 |||||||| |||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 92 TTCAAGCATGGAAAGCATGGAGGCAAATTCAAGCACGGAAAGCATGGAAAGCATGGCAAG 33 Query 593 ---GG-AAACATGGCATGTTTGGAGGAGGAGG 620 || |||||||| ||||||||||||||||| Sbjct 32 CACGGGAAACATGGTATGTTTGGAGGAGGAGG 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36178648233 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5