BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19200.1
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946251 jgi|Araly1|946251|scaffold_702480.1 625 2e-178
Ahg952238 jgi|Araly1|952238|scaffold_48600002.1 300 1e-80
> Ahg946251 jgi|Araly1|946251|scaffold_702480.1
Length=564
Score = 625 bits (338), Expect = 2e-178
Identities = 520/598 (87%), Gaps = 51/598 (9%)
Strand=Plus/Plus
Query 84 GGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAGCAAGAGAA 143
||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 6 GGTTTTAAGTGAAAAA-CAATGGGAGGTGGTAAAGACAAGCATCATGATGAGCATGACAA 64
Query 144 AGGATTTCATGGTTTTCCAGGAGGTGGACAT--T-ACCCACCTGCTCAAGGAGGTTACCC 200
||| |||||||||||||||||||| |||||| | ||||||||||||||||||| || ||
Sbjct 65 AGGGTTTCATGGTTTTCCAGGAGGAGGACATCATTACCCACCTGCTCAAGGAGGGTATCC 124
Query 201 TCCTCAAGGTTACCCACCACAACAAGGGTATCCTCCAGCTGGAGGCTACCCACCTGCCGG 260
||| |||||||||||||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct 125 TCCACAAGGTTACCCACCACAA---GGGTATCCTCCAGCTGGAGGCTATCCGCCTGCTGG 181
Query 261 ATATCCTCCTGGTGCTTACCCTGCTGCGCCCGGTGGTTATCCTCCTGCACCTGGAGGTTA 320
||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 182 ATATCCTCCTGGTGCATACCCTGCTGCACCCGGTGGTTATCCTCCTGC---TGG------ 232
Query 321 CCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGGACATTCTGGTGGTGGACT 380
| | ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 233 C--T----------ATCCTGCACCTGGAGCTCACCATTCAGGACATTCTAGTGGTGGAAT 280
Query 381 CGGAGGCATGATAGCAGGTGCAGCTGGTGCAGCCGCAGCAGCTTATGGAGCTCACCATGT 440
|||||||||||||||||| | |||| |||| ||| || ||||||||||||||||
Sbjct 281 CGGAGGCATGATAGCAGG-G--GCTG---CAGC---AGC--CT-ATGGAGCTCACCATGT 328
Query 441 TGGTCACGCCTCTCACAACCCTTACGGGCATGCTGTAGGACATGGAGGGTATGGCCATGC 500
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TGGTCATGCCTCTCACAACCCTTACGGGCATGCTGTAGGACATGGAGGGTATGGCCATGG 388
Query 501 CCCTGCTCATGGCTTTGGCCATGGTGGTCATGGTAAATTCAAGCACGGAAAGCATGGAGG 560
|||||||||||||||||| | |||||||||||| |||||||| ||||||||||||||
Sbjct 389 CCCTGCTCATGGCTTTGGTGGTCATGGTCATGGTAAGTTCAAGCATGGAAAGCATGGAGG 448
Query 561 CAAATTCAAGCACGGAAAGCATGGAAAGCA---C--G---GG-AAACATGGCATGTTTGG 611
|||||||||||||||||||||||||||||| | | || |||||||| ||||||||
Sbjct 449 CAAATTCAAGCACGGAAAGCATGGAAAGCATGGCAAGCACGGGAAACATGGTATGTTTGG 508
Query 612 AGGAGGAGGCAAATTCAAGAAGTGGAAGTAATCTCAAAAACCCCACCTTTGATCCTCT 669
|||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 509 AGGAGGAGGCAAATTCAAGAAGTGGAAGTAATCTCAAAAAACCC-C-TTTGATCCTCT 564
> Ahg952238 jgi|Araly1|952238|scaffold_48600002.1
Length=280
Score = 300 bits (162), Expect = 1e-80
Identities = 239/272 (88%), Gaps = 21/272 (8%)
Strand=Plus/Minus
Query 358 TCAGGACATTCTGGTGGTGGACTCGGAGGCATGATAGCAGGTGCAGCTGGTGCAGCCGCA 417
|||||||||||| |||||||| ||||||||||||||||||| | || |||| |||
Sbjct 260 TCAGGACATTCTAGTGGTGGAATCGGAGGCATGATAGCAGG-G--GC---TGCA---GCA 210
Query 418 GCAGCTTATGGAGCTCACCATGTTGGTCACGCCTCTCACAACCCTTACGGGCATGCTGTA 477
|| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 209 GC--C-TATGGAGCTCACCATGTTGGTCATGCCTCTCACAACCCTTACGGGCATGCTGTA 153
Query 478 GGACATGGAGGGTATGGCCATGCCCCTGCTCATGGCTTTGGCCATGGTGGTCATGGTAAA 537
|||||||||||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct 152 GGACATGGAGGGTATGGCCATGGCCCTGCTCATGGCTTTGGTGGTCATGGTCATGGTAAG 93
Query 538 TTCAAGCACGGAAAGCATGGAGGCAAATTCAAGCACGGAAAGCATGGAAAGCA---C--G 592
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 92 TTCAAGCATGGAAAGCATGGAGGCAAATTCAAGCACGGAAAGCATGGAAAGCATGGCAAG 33
Query 593 ---GG-AAACATGGCATGTTTGGAGGAGGAGG 620
|| |||||||| |||||||||||||||||
Sbjct 32 CACGGGAAACATGGTATGTTTGGAGGAGGAGG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36178648233
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5