BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19220.1
Length=2799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492927 jgi|Araly1|492927|fgenesh2_kg.7__2360__AT4G19220.1 4010 0.0
Ahg354569 jgi|Araly1|354569|fgenesh1_pg.C_scaffold_7001742 472 9e-132
Ahg951804 jgi|Araly1|951804|scaffold_17700003.1 396 5e-109
Ahg945968 jgi|Araly1|945968|scaffold_702197.1 267 4e-70
Ahg945959 jgi|Araly1|945959|scaffold_702188.1 267 4e-70
Ahg354574 jgi|Araly1|354574|fgenesh1_pg.C_scaffold_7001747 267 4e-70
Ahg951803 jgi|Araly1|951803|scaffold_17700002.1 233 4e-60
Ahg951805 jgi|Araly1|951805|scaffold_17700004.1 111 2e-23
> Ahg492927 jgi|Araly1|492927|fgenesh2_kg.7__2360__AT4G19220.1
Length=2760
Score = 4010 bits (2171), Expect = 0.0
Identities = 2566/2755 (93%), Gaps = 34/2755 (1%)
Strand=Plus/Plus
Query 41 AAAGCCTGAGACTTTATTGTTCCGGTCACATAATCGACTCTCTTAGGCATTCAATTTCTC 100
||| ||||||| |||||||||||||||| ||||| ||||||| ||||| ||||||| ||
Sbjct 21 AAA-CCTGAGAATTTATTGTTCCGGTCATGTAATCTACTCTCTAAGGCACTCAATTTTTC 79
Query 101 G-CTGGAATTCTCCTTCCGGCTATTGTTCTAATTATT-ACTTCAGTAAGAGAAAACATAA 158
| | |||| | | ||| | |||||||| || |||||||||||| ||||||| |
Sbjct 80 GCCGGGAA---T--AT-CGG----TCTTCTAATT-TTCACTTCAGTAAGATAAAACATGA 128
Query 159 GCGACACTTCACGTCCTCTGTTTTGTCTCCGGTTACTCCTATTGTCCATAACCTGTTCGA 218
|||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||
Sbjct 129 GCGACACTTCACGTCCTCTGTTTTGTCTCCAGTTACTCCTAGTGTATATAACCTGTTCGA 188
Query 219 CGAATTGCCTGAGAGAGAGAATAGGACTATGGAGTCGAGCTTTATGTTCTTACGAGATGT 278
|||| |||| ||||||| ||||||||| ||||| | || ||||||||||| ||||||||
Sbjct 189 CGAAATGCCCAAGAGAGATAATAGGACTGTGGAGGCTAGTTTTATGTTCTTGCGAGATGT 248
Query 279 ACTTAGATCCTTTATGATGAGAACAGAGACAGAGACTCCGAGGAGTGTCCATTGTTTCGC 338
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 249 ACTTAGATCCTTTATGATGAGAACAGAGACAGAGACTCCGAGGAGTATCCATTGTTTCGC 308
Query 339 TCTGAAGTGTGGTTTACTCCAAGATTTAGCTACATCTTCGAAGCTTCTGACGTTTTACGG 398
||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 309 TCTGAAGTGTGGTTTCCTCCAAGATTTAGCTACATCTTCAAAGCTTCTAACGATTTACGG 368
Query 399 TAGAACCGGGGAGTTAGTATCTTCTTCGTGTCTGTTTGATGAATTGAAAGAGAAAGATGT 458
|||||||||||| || || ||||||| | ||||||||| |||||||||||||||||||||
Sbjct 369 TAGAACCGGGGACTTGGTGTCTTCTTTGGGTCTGTTTGGTGAATTGAAAGAGAAAGATGT 428
Query 459 GATTGTTTGGAACAGTATGATCACT-GCTTTGAATCAAAATGGTCGTTACATTGCAGCTG 517
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 429 GATTGTTTGGAACAGTATGATCACTAG-TTTGAATCAAAATGGTCGTTACATGGCAGCTG 487
Query 518 TTGGATTGTTTATTGAGATGATTCATAAAGGAAATGAGTTTGATTCAACCACGCTTTTAC 577
|||||||||| |||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 488 TTGGATTGTTCGTTGAGATGATTCATAAGGGGAATGAGTTTGATTCGACCACGCTTTTAC 547
Query 578 TTGCAGCTTCTGCGTTATCTAGTCTACATCTTTCGAGA-AAATGTTCAATGCTTCATTGT 636
|||||| ||| |||||||||||| |||||||||| | | |||||| ||||| ||||||||
Sbjct 548 TTGCAGTTTCGGCGTTATCTAGTTTACATCTTTC-AAAGAAATGTCCAATGGTTCATTGT 606
Query 637 TTAGCAATAGAGACTGGTTTGGTTGGGGATTCTAGTTTGTGCAATGCATTGATGAATCTA 696
|| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 607 TTGGCAATAGAGACTGGTTTGGTTTCGGATTCTAGCTTGTGCAATGCATTGATGAATCTA 666
Query 697 TATGCAAAAGGCGAGAACTTGAGCTCCGCAGAGTGTGTGTTCACGCATATGGAGCATCGA 756
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 667 TATGCAAAAGGCGAGGACTTGAGCTCCGCAGAGTGCGTGTTCACGCATATGGAGCACCGA 726
Query 757 GACATTGTTTCTTGGAACACGATCATGACTAAATGTCTTGCAAAT-GGTCATCCCAGGAA 815
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 727 GACATTGTTTCTTGGAACACGATCATGACTAAATGTCTTGCAAATGGGT-ATCCCAGGAA 785
Query 816 ATCGTTGCA-ATATTTCAAGTCGATGACTGGTTCAGGACAAGAAGCTGATACTGTGACTT 874
||| || | ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 786 TTCGCTG-ATATATTTCAAGTCGATGATTGGTTCAGGACAAGAAGCTGATAATGTGACTT 844
Query 875 TTTCATGCGTTATCTCAGCTTGCTCTTCTATTGAAGAACTTACTTTGGGTGAATCACTCC 934
||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||| ||||
Sbjct 845 TTTCATGCGTTATATCAGCTTGCTCTTGTCTTGAAGAACTTCCTTTGGGTGAATCCCTCC 904
Query 935 ACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTCATGTCTCTGTGGGCAACTCGA 994
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 905 ACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTCATGTCTCTGTGGCCAACTCGA 964
Query 995 TCATTTCGATGTACTCAAAATGCGGGGACA-CGGAGGCTGCGGAAACTGTGTTTGAAGAA 1053
|||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 965 TCATTTCGATGTACTCAAAATGTGGGGACATC-GAGGCTGCGGAAACTGTGTTTGAAGAA 1023
Query 1054 TTAGTGTGCAGGGATGTTATTTCTTCGAACGCAATCCTTAATGGG-TTTGCTGCAAATGG 1112
||| |||||| |||||||||||||| ||| ||||||||||||||| ||| ||||||||||
Sbjct 1024 TTATTGTGCAAGGATGTTATTTCTTGGAATGCAATCCTTAATGGGCTTT-CTGCAAATGG 1082
Query 1113 AATGTTTGAAGAAGCATTTGGTATTTTGAACCAAATGCAATCGGTGGATAAGATTCAGCC 1172
||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1083 AATGTTTGAGGAAGCATTTGGTATTTTGAAGGAAATGCAGTCGGTGGATAAGATTCAGCC 1142
Query 1173 TGATATCGCCACTGTGGTTTCAATAACTTCCATATGTGGTGATTTAAGTTTTTCACGAGA 1232
||||||| |||| |||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1143 TGATATCTCCACCGTGGTTTCAATAACTTCCATATGTGGTGATTTTTGTTTGTCACGAGA 1202
Query 1233 GGGAAGAGCAGTTCATGGTTATACGGTTCGCATGGAGATGCAATCCAGAGCATTAGAGGT 1292
|||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1203 GGGAAGAGCAATTCATGGTTATATGGTTCGCAGGGAGATGCAATCCAGAGCATTAGAGGT 1262
Query 1293 AATAAACAGCGTTATTGATATGTATGGTAAATGTGGCTTAACAACTCAGGCTGAGTTGTT 1352
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 1263 AATAAACAGCGTTATTGATATGTACGGTAAATGTGGCTTAACAAGTCAGGCTGAGTTTTT 1322
Query 1353 GTTCAAGACAACAACACATCGAGACTTGGTTTCGTGGAACTCGATGATATCTGCTTTCT- 1411
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1323 GTTCAAGACCACAACACATCGAGACTTGGTTTCGTGGAACTCGATGATATCTGCTTT-TG 1381
Query 1412 CGCAAAACGGCTTTACGCACA-AAGCTAAGAATCTGTTCAAGGAAGTTGTCAGTGAGTAT 1470
|||||||||| ||||| || | |||||||||||||||||| |||||||||||||||||||
Sbjct 1382 CGCAAAACGGGTTTACACA-AGAAGCTAAGAATCTGTTCAGGGAAGTTGTCAGTGAGTAT 1440
Query 1471 TCTTGTTCAAAGTTTAGCTTGTCAACTGTCTTGGCAATTCTTACGTCTTGTGATTCCTCT 1530
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1441 ACTTGTTCAAAGTTTAGCTTGTCGACTGTGTTGGCAATTCTTACGTCTTGTGATTCCTCT 1500
Query 1531 GACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAAAGCTAGGGGACCTAACT 1590
|| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GATTCTCTCATTTTTGGAAAATCAGTCCACTGTTGGCTGCAAAAGCTAGGGGACCTAACT 1560
Query 1591 TCAGCATTCCTGCGGTTAGAGACGATGTCCGAAACAAGAGATCTCACATCTTGGAACTCT 1650
|||||||| || | |||||||| ||| | ||||||||| |||||||||||||||||||||
Sbjct 1561 TCAGCATTTCTTCTGTTAGAGATGATATTCGAAACAAGGGATCTCACATCTTGGAACTCT 1620
Query 1651 GTAATCTCTGGCTGCGCATCAAGTGGTCACCATTTAGAATCATTGAGAGCGTTTCAAGCA 1710
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 GTTATCTATGGCTGCGCATCAAGTGGTCACCATTTAGAATCATTGAGAGCGTTTCAAGCA 1680
Query 1711 ATGAGTCGTGAAGGGAAAATTCGTCATGACTTGATTACTCTCCTGGGTACTATTTCAGCT 1770
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1681 ATGAGTCGTGAAGGGAATATTCGTCATGACTTGATTACTCTTCTGGGTACTATTTCAGCT 1740
Query 1771 AGTGGAAACCTCGGACTGGTCTTACAAGGAAGGTGCTTTCATGGTCTAGCTATTAAAAGT 1830
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1741 AGTGGAAACCTCAGACTGGTCTTACAAGGAAGGTGCCTTCATGGTCTAGCTATTAAAAGT 1800
Query 1831 CTAAGAGAACTTGACACCCAACTGCAGAATACATTGATCACCATGTATGGTAGATGTAAA 1890
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1801 CTGAGAGAACTTGACACCCAACTGCAGAATACGTTGATCACCATGTATGGTAGATGTAAA 1860
Query 1891 GACATTGAGAGTGCAGTGAAGGTTTTTGGCTTAATCTCTGACCCTAACTTGTGTTCTTGG 1950
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1861 GACACTGAGAGTGCAGTGAAGGTTTTTGGCTTGATCTCTGACCCTAACTTGTGTTCCTGG 1920
Query 1951 AACTGTGTGATATCAGCTTTGTCTCAGAACAAAGCTGGACGAGAAGTGTTTCAACTCTTC 2010
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1921 AACTGTGTGATATCAGCTTTATCTCAGAACAAAGCTGGACGCGAAGTGTTTCAACTCTTC 1980
Query 2011 AGAAACCTCAAGTTAGAGCCAAACGAGATCACATTTGTTGGTCTTCTGTCTGCGTCGACT 2070
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1981 AGAAACCTCAAGTTAGAGCCAAACGAGATCACATTTGTTGGTCTTCTGTCTGCCTCGACT 2040
Query 2071 CAGCTTGGGTCAACGAGCTATGGTATGCAGGCACATTGTCATCTCATTCGTCGTGGGTTT 2130
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2041 CAGCTTGGGTCAACAAGCTATGGTATGCAGGCACACTGTCATCTCATTCGTCGTGGGTTT 2100
Query 2131 CAAGCTAACCCTTTTGTCAGTGCAGCACTTGTGGACATGTACAGTAGCTGCGGGATGCTA 2190
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2101 CAAGCTAACCCTTTTGTCAGTGCAGCACTAGTGGATATGTACAGTAGCTGCGGGATGCTA 2160
Query 2191 GAAACTGGCATGAAGGTGTTTAGAAACTCGGGGGTGAATTCAATTTCTGCTTGGAACTCC 2250
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2161 GAAACTGGCATGAAGGTGTTTAGAAACTCGGGGGTGAAATCAATTTCTGCTTGGAACTCA 2220
Query 2251 GTTATCTCTGCACATGGATTCCATGGAATGGGAGAGAAGGCAATGGAGCTATTCAAGGAA 2310
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 GTTATCTCTGCATATGGATTCCATGGAATGGGAGAGAAGGCAATGGAGCTATTCAAGGAA 2280
Query 2311 CTGAGTAGT---AACTCAGAGATGGAACCAAACAAGAGCAGTTTCATAAGCCTGTTGTCA 2367
|||||||| ||||||| |||| ||||||||||||||| |||||||||||| ||||||
Sbjct 2281 ATGAGTAGTGGTAACTCAGGGATGAAACCAAACAAGAGCACTTTCATAAGCCTATTGTCA 2340
Query 2368 GCTTGCAGCCACTCTGGGTTTATTGATGAAGGTCTAAGTTATTACAAGCAAATGGAGGAA 2427
||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||
Sbjct 2341 GCTTGTAGCCACTCTGGGTTTATAAATGAAGGTCTAAGATATTACAACCAAATGGAGGAA 2400
Query 2428 AAATTTGGGGTTAAACCAGTTACTGAGCATCGGGTTTGGATTGTTGACATGCTTGGCCGG 2487
||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 2401 AAATTTGGGGTTAAACCAGTTACCGAGCATTGGGTTTGCATTGTTGACATGCTTGGCCGG 2460
Query 2488 GCAGGGAAACTGAGAGAAGCTTATGAGTTCATCACAGGGATTGGTGAGCCACAAAAAGCA 2547
|||||||| |||| |||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 2461 GCAGGGAAGCTGAAAGAAGCTTATGAATTCATCATAGGGATTGGTGAGCCACAAAAAGCA 2520
Query 2548 GGTGTATGGGGAGCGTTGTTGAGCGCTTGCAACTATCATGGGGATACAAAGTTGGGAAAA 2607
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 2521 GGTGTGTGGGGAGCTTTGTTGAGCGCTTGTAACTATCATGGGGATACAAAGTTGGGAACA 2580
Query 2608 GAAGTTGCAGAAGTTTTGTTTGAAATGGAACCAGACAATGCATCTTATTACATCTCGTTG 2667
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2581 GAAGTTGCAGAAGTTTTGTTTGAATTGGAACCAGACAATGCATCTTATTACATCTCGTTG 2640
Query 2668 GCAAATACTTATGTTGGATTGGGAGGTTGGGAAGAAGCTGTAAGACTACGGAAGATGGTG 2727
|| |||||||||||||| ||||| |||||||| ||||||||| | ||||||||||| |||
Sbjct 2641 GCGAATACTTATGTTGGGTTGGGTGGTTGGGATGAAGCTGTACGGCTACGGAAGATTGTG 2700
Query 2728 GAGGATAATGCCTTGAAAAAGCTTCCTGGTTACAGTGTTATTGACGTTAGGTGTT 2782
||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 2701 GAGGATAATGCATTGAAGAAGCTACCTGGTTACAGTGTTATTGACGTTAG-TGTT 2754
> Ahg354569 jgi|Araly1|354569|fgenesh1_pg.C_scaffold_7001742
Length=1602
Score = 472 bits (255), Expect = 9e-132
Identities = 306/331 (92%), Gaps = 2/331 (1%)
Strand=Plus/Plus
Query 802 GGTCATCCCAGGAAATCGTTGCAATATTTCAAGTCGATGACTGGTTCAGGACAAGAAGCT 861
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 782 GGT-ATCCCAGGAAATCGTTGAAATATTTCAAGTCGATGACTGGTTCAGGACAAGAGGCT 840
Query 862 GATACTGTGACTTTTTCATGCGTTATCTCAGCTTGCTCTTCTATTGAAGAACTTACTTTG 921
|||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 841 GATAGTGTGACTTTTTCATGCGTTATCTCAGCTTGCTCTTCTCTTGAAAAACTTCCTTTG 900
Query 922 GGTGAATCACTCCACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTCATGTCTCT 981
|||||| | |||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 901 GGTGAACCCCTCCACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTGAGGTCTCT 960
Query 982 GTGGGCAACTCGATCATTTCGATGTACTCAAAATGCGGGGACACGGAGGCTGCGGAAACT 1041
|||| |||||| ||||||||||||||||||||||| | |||| | ||||| |||||||||
Sbjct 961 GTGGCCAACTCCATCATTTCGATGTACTCAAAATGTGAGGACGCCGAGGC-GCGGAAACT 1019
Query 1042 GTGTTTGAAGAATTAGTGTGCAGGGATGTTATTTCTTCGAACGCAATCCTTAATGGGTTT 1101
|||||||||||||| |||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct 1020 TTGTTTGAAGAATTATTGTGCAAGGATGTTATTTCTTGGAATGCAATCCTTAATGGGTTT 1079
Query 1102 GCTGCAAATGGAATGTTTGAAGAAGCATTTG 1132
||||||||||||||||| || ||||||||||
Sbjct 1080 GCTGCAAATGGAATGTTCGAGGAAGCATTTG 1110
Score = 267 bits (144), Expect = 4e-70
Identities = 195/219 (89%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 515 CTGTTGGATTGTTTATTGAGATGATTCATAAAGGAAATGAGTTTGATTCAACCACGCTTT 574
||||||||||||| ||||||||||||| || ||| ||||||||||||| || ||||| |
Sbjct 563 CTGTTGGATTGTTCGTTGAGATGATTCAGAAGGGATATGAGTTTGATTCTACGACGCTCT 622
Query 575 TACTTGCAGCTTCTGCGTTATCTA-GTCTACATCTTTCGAGA-AAATGTT-CAATGCTTC 631
||||||||||||| |||||||| | || |||||||||| | | |||| || ||||| |||
Sbjct 623 TACTTGCAGCTTCGGCGTTATCCACGT-TACATCTTTC-AAAGAAAT-TTCCAATGGTTC 679
Query 632 ATTGTTTAGCAATAGAGACTGGTTTGGTTGGGGATTCTAGTTTGTGCAATGCATTGATGA 691
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 680 ATTGTTTAGCAATAGAGACTAGTTTGGTTTCGGATTCTAGTTTGTGCAATGCATTGATGA 739
Query 692 ATCTATATGCAAAAGGCGAGAACTTGAGCTCCGCAGAGT 730
||||||||||||||||||| ||||||||||| ||||||
Sbjct 740 TTCTATATGCAAAAGGCGAGGACTTGAGCTCCACAGAGT 778
Score = 148 bits (80), Expect = 2e-34
Identities = 98/107 (92%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1580 GGGACCTAACTTCAGCATTCCTGCGGTTAGAGACGATGTCCGAAACAAGAGATCTCACAT 1639
||||||| |||||||||||||||| ||| |||||||| || |||||||| ||||||||||
Sbjct 1407 GGGACCTTACTTCAGCATTCCTGCTGTTCGAGACGATATCGGAAACAAGGGATCTCACAT 1466
Query 1640 CTTGGAACTCTGTAATCTCTGGCTGCGCATCAAGTGGTCACCATTTA 1686
||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1467 CTTGGAACTCTGTTATCGATGGCTGCGCATCAAGTGGTCACCATTTA 1513
Score = 111 bits (60), Expect = 2e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 1516 TCTTGTGATTCCTCTGACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAAAG 1575
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1282 TCTTGTGATTCGTCTGACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAATG 1341
Query 1576 CTAGGG 1581
||||||
Sbjct 1342 CTAGGG 1347
Score = 93.5 bits (50), Expect = 8e-18
Identities = 58/61 (95%), Gaps = 3/61 (5%)
Strand=Plus/Plus
Query 1231 GAGGGAAGAGCAGTTCATGGTTATACGGTTCGCATGG-AGATGCAATCCAGAGCATTAGA 1289
||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct 1110 GAGGGAAGAGCAGTTCATGGTTATACGGTTCGC-TGGGAGATGCAATCCAGA-CATTAGA 1167
Query 1290 G 1290
|
Sbjct 1168 G 1168
> Ahg951804 jgi|Araly1|951804|scaffold_17700003.1
Length=480
Score = 396 bits (214), Expect = 5e-109
Identities = 254/273 (93%), Gaps = 3/273 (1%)
Strand=Plus/Plus
Query 1066 GATGTTATTTCTTCGAACGCAATCCTTAATGGGTTTGCTGCAAATGGAATGTTTGAAGAA 1125
||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 208 GATGTTATTTCTTGGAATGCAATCCTTAATGGGTTTGCTGCAAATGGAATGTTCGAGGAA 267
Query 1126 GCATTTGGTATTTTGAACCAAATGCAATCGGTGGATAAGATTCAGCCTGATATCGCCACT 1185
||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 268 GCATTTGGTGTTTTGAAGGAAATGCAATCGGTGGATAAGATCCAGCCTGATATCGCCACC 327
Query 1186 GTGGTTTCAATAACTTCCATATGTGGTGATTTAAGTTTTTCACGAGAGGGAAGAGCAGTT 1245
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 328 GTGGTTTCAATAACTTCCATATGTGGTGATTTCTGTTTGTCACGAGAGGGAAGAGCAGTT 387
Query 1246 CATGGTTATACGGTTCGCATGG-AGATGCAATCCAGAGCATTAGAGGTAATAAACAGCGT 1304
|||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||
Sbjct 388 CATGGTTATACGGTTCGC-TGGGAGATGCAATCCAGAGCTTTAGAGGTAATAAACAGTGT 446
Query 1305 TATTGATATGTATGGTAAATGTGGCTTAACAAC 1337
|||||||||||| ||||||||||||||| |||
Sbjct 447 TATTGATATGTAACGTAAATGTGGCTTAA-AAC 478
Score = 305 bits (165), Expect = 9e-82
Identities = 193/207 (93%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 817 TCGTTGCAATATTTCAAGTCGATGACTGGTTCAGGACAAGAAGCTGATACTGTGACTTTT 876
|||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1 TCGTTGAAATATTTCAAGTCGATGACTGGTTCAGGACAAGAGGCTGATAGTGTGACTTTT 60
Query 877 TCATGCGTTATCTCAGCTTGCTCTTCTATTGAAGAACTTACTTTGGGTGAATCACTCCAC 936
||||||||||||||||||||||||||| ||||| ||||| ||||||||||| | ||||||
Sbjct 61 TCATGCGTTATCTCAGCTTGCTCTTCTCTTGAAAAACTTCCTTTGGGTGAACCCCTCCAC 120
Query 937 GGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTCATGTCTCTGTGGGCAACTCGATC 996
|||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |||
Sbjct 121 GGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTGAGGTCTCTGTGGCCAACTCCATC 180
Query 997 ATTTCGATGTACTCAAAATGCGGGGAC 1023
|||||||||||||||||||| | ||||
Sbjct 181 ATTTCGATGTACTCAAAATGTGAGGAC 207
> Ahg945968 jgi|Araly1|945968|scaffold_702197.1
Length=252
Score = 267 bits (144), Expect = 4e-70
Identities = 191/212 (90%), Gaps = 10/212 (5%)
Strand=Plus/Plus
Query 2272 CATGGAATGGGAGAGAAGGCAATGGAGCTATTCAAGGAACTG-----AGTA---GTAACT 2323
||| ||||||||||||||||||||||||||||||||||| || |||| ||||||
Sbjct 22 CAT-GAATGGGAGAGAAGGCAATGGAGCTATTCAAGGAAATGATATAAGTAGTGGTAACT 80
Query 2324 CAGAGATGGAACCAAACAAGAGCAGTTTCATAAGCCTGTTGTCAGCTTGCAGCCACTCTG 2383
||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 81 CAGGGATGGAACCAAACAAGAGCACTTTCATAAGCCTATTGTCAGCTTGCAGCCACTCTG 140
Query 2384 GGTTTATTGATGAAGGTCTAAGTTATTACAAGCAAATGGAGGAAAAATTTGGGGTTAAAC 2443
||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 141 GGTTTATAGATGAAGGTCTAAGATATTACAACCAAATGGAGAAAAAATTTGGGGTTAAAC 200
Query 2444 CAGTTACTGAGCATCGGGTTTGGAT-TGTTGA 2474
||||||| |||||||| ||||| || ||||||
Sbjct 201 CAGTTACCGAGCATCGTGTTTGTATCTGTTGA 232
> Ahg945959 jgi|Araly1|945959|scaffold_702188.1
Length=252
Score = 267 bits (144), Expect = 4e-70
Identities = 191/212 (90%), Gaps = 10/212 (5%)
Strand=Plus/Plus
Query 2272 CATGGAATGGGAGAGAAGGCAATGGAGCTATTCAAGGAACTG-----AGTA---GTAACT 2323
||| ||||||||||||| ||||||||||||||||||||| || |||| ||||||
Sbjct 22 CAT-GAATGGGAGAGAAAGCAATGGAGCTATTCAAGGAAATGATATAAGTAGTGGTAACT 80
Query 2324 CAGAGATGGAACCAAACAAGAGCAGTTTCATAAGCCTGTTGTCAGCTTGCAGCCACTCTG 2383
||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 81 CAGGGATGGAACCAAACAAGAGCACTTTCATAAGCCTATTGTCAGCTTGCAGCCACTCTG 140
Query 2384 GGTTTATTGATGAAGGTCTAAGTTATTACAAGCAAATGGAGGAAAAATTTGGGGTTAAAC 2443
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 141 GGTTTATAGATGAAGGTCTAAGATATTACAACCAAATGGAGGAAAAATTTGGGGTTAAAC 200
Query 2444 CAGTTACTGAGCATCGGGTTTGGAT-TGTTGA 2474
||||||| |||||||| ||||| || ||||||
Sbjct 201 CAGTTACCGAGCATCGTGTTTGTATCTGTTGA 232
> Ahg354574 jgi|Araly1|354574|fgenesh1_pg.C_scaffold_7001747
Length=1230
Score = 267 bits (144), Expect = 4e-70
Identities = 195/219 (89%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 515 CTGTTGGATTGTTTATTGAGATGATTCATAAAGGAAATGAGTTTGATTCAACCACGCTTT 574
||||||||||||| ||||||||||||| || ||| ||||||||||||| || ||||| |
Sbjct 512 CTGTTGGATTGTTCGTTGAGATGATTCAGAAGGGATATGAGTTTGATTCTACGACGCTCT 571
Query 575 TACTTGCAGCTTCTGCGTTATCTA-GTCTACATCTTTCGAGA-AAATGTT-CAATGCTTC 631
||||||||||||| |||||||| | || |||||||||| | | |||| || ||||| |||
Sbjct 572 TACTTGCAGCTTCGGCGTTATCCACGT-TACATCTTTC-AAAGAAAT-TTCCAATGGTTC 628
Query 632 ATTGTTTAGCAATAGAGACTGGTTTGGTTGGGGATTCTAGTTTGTGCAATGCATTGATGA 691
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 629 ATTGTTTAGCAATAGAGACTAGTTTGGTTTCGGATTCTAGTTTGTGCAATGCATTGATGA 688
Query 692 ATCTATATGCAAAAGGCGAGAACTTGAGCTCCGCAGAGT 730
||||||||||||||||||| ||||||||||| ||||||
Sbjct 689 TTCTATATGCAAAAGGCGAGGACTTGAGCTCCACAGAGT 727
Score = 265 bits (143), Expect = 2e-69
Identities = 162/171 (95%), Gaps = 1/171 (1%)
Strand=Plus/Plus
Query 802 GGTCATCCCAGGAAATCGTTGCAATATTTCAAGTCGATGACTGGTTCAGGACAAGAAGCT 861
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 731 GGT-ATCCCAGGAAATCGTTGAAATATTTCAAGTCGATGACTGGTTCAGGACAAGAGGCT 789
Query 862 GATACTGTGACTTTTTCATGCGTTATCTCAGCTTGCTCTTCTATTGAAGAACTTACTTTG 921
|||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 790 GATAGTGTGACTTTTTCATGCGTTATCTCAGCTTGCTCTTCTCTTGAAAAACTTCCTTTG 849
Query 922 GGTGAATCACTCCACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCT 972
|||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GGTGAACCCCTCCACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCT 900
Score = 228 bits (123), Expect = 2e-58
Identities = 140/148 (95%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 1145 AAATGCAATCGGTGGATAAGATTCAGCCTGATATCGCCACTGTGGTTTCAATAACTTCCA 1204
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 905 AAATGCAATCGGTGGATAAGATCCAGCCTGATATCGCCACCGTGGTTTCAATAACTTCCA 964
Query 1205 TATGTGGTGATTTAAGTTTTTCACGAGAGGGAAGAGCAGTTCATGGTTATACGGTTCGCA 1264
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 965 TATGTGGTGATTTCTGTTTGTCACGAGAGGGAAGAGCAGTTCATGGTTATACGGTTCGC- 1023
Query 1265 TGG-AGATGCAATCCAGAGCATTAGAGG 1291
||| |||||||||||||||| |||||||
Sbjct 1024 TGGGAGATGCAATCCAGAGCTTTAGAGG 1051
> Ahg951803 jgi|Araly1|951803|scaffold_17700002.1
Length=405
Score = 233 bits (126), Expect = 4e-60
Identities = 164/183 (90%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 147 GAGAAAACATAAGCGACACTTCACGTCCTCTGTTTTGTCTCCGGTTACTCCTATTGTCCA 206
|||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 24 GAGAAAACATGAGCGACACTTCACGTCCTCTGTCTTGTCTCCGGCTACTCCTATTGTCCA 83
Query 207 TAACCTGTTCGACGAATTGCCTGAGAGAGAGAATAGGACTATGGAGTCGAGCTTTATGTT 266
||| ||||||||||| ||| ||| |||| |||||||| ||||||||| ||| ||||
Sbjct 84 TAAAGTGTTCGACGAAAAGCCCAAGATAGAGGATAGGACTGTGGAGTCGATTTTTTTGTT 143
Query 267 CTTACGAGATGTACTTAGATCCTTTATGATGAGAACAGAGACAGAGACTCCGAGGAGTGT 326
|||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 144 CTTACGAGATGTTCTTAGATCCTCCATGATGATAACAGAGACAGAGACTCCGAGGAGTGT 203
Query 327 CCA 329
|||
Sbjct 204 CCA 206
Score = 209 bits (113), Expect = 7e-53
Identities = 179/209 (86%), Gaps = 11/209 (5%)
Strand=Plus/Plus
Query 356 TCCAAGATTTAGCTACATCTTCGAAGCTTCTGACGTTTTACGGTAGAACCGGGGAGTTAG 415
||||||||||| ||||||||||||||||||||||| ||||| | | ||||| ||||
Sbjct 203 TCCAAGATTTAACTACATCTTCGAAGCTTCTGACGCTTTAC----G--CGGGGGACTTAG 256
Query 416 TATCTTCTTCGTGTCTGTTTGATGAATTGAAAGAGAAAGATGTGATTGTTTGGAACAGTA 475
| ||||||| | | || |||| |||||||||||| |||||||||||||||||||||||||
Sbjct 257 TGTCTTCTTTGGGCCTATTTGGTGAATTGAAAGATAAAGATGTGATTGTTTGGAACAGTA 316
Query 476 TGATCACTGCTTTGAATCAAAATGGTCGTTACATT----G-CAGCTGTTGGATTGTTTAT 530
||||||||| || |||||||||||||| ||||||| | |||||||||||||||| |
Sbjct 317 TGATCACTGGTTCGAATCAAAATGGTCATTACATTACATGGCAGCTGTTGGATTGTTCGT 376
Query 531 TGAGATGATTCATAAAGGAAATGAGTTTG 559
|||||||||||| || ||| |||||||||
Sbjct 377 TGAGATGATTCAGAAGGGATATGAGTTTG 405
> Ahg951805 jgi|Araly1|951805|scaffold_17700004.1
Length=397
Score = 111 bits (60), Expect = 2e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 1516 TCTTGTGATTCCTCTGACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAAAG 1575
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 96 TCTTGTGATTCGTCTGACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAATG 155
Query 1576 CTAGGG 1581
||||||
Sbjct 156 CTAGGG 161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105624249385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5