BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19220.1 Length=2799 Score E Sequences producing significant alignments: (Bits) Value Ahg492927 jgi|Araly1|492927|fgenesh2_kg.7__2360__AT4G19220.1 4010 0.0 Ahg354569 jgi|Araly1|354569|fgenesh1_pg.C_scaffold_7001742 472 9e-132 Ahg951804 jgi|Araly1|951804|scaffold_17700003.1 396 5e-109 Ahg945968 jgi|Araly1|945968|scaffold_702197.1 267 4e-70 Ahg945959 jgi|Araly1|945959|scaffold_702188.1 267 4e-70 Ahg354574 jgi|Araly1|354574|fgenesh1_pg.C_scaffold_7001747 267 4e-70 Ahg951803 jgi|Araly1|951803|scaffold_17700002.1 233 4e-60 Ahg951805 jgi|Araly1|951805|scaffold_17700004.1 111 2e-23 > Ahg492927 jgi|Araly1|492927|fgenesh2_kg.7__2360__AT4G19220.1 Length=2760 Score = 4010 bits (2171), Expect = 0.0 Identities = 2566/2755 (93%), Gaps = 34/2755 (1%) Strand=Plus/Plus Query 41 AAAGCCTGAGACTTTATTGTTCCGGTCACATAATCGACTCTCTTAGGCATTCAATTTCTC 100 ||| ||||||| |||||||||||||||| ||||| ||||||| ||||| ||||||| || Sbjct 21 AAA-CCTGAGAATTTATTGTTCCGGTCATGTAATCTACTCTCTAAGGCACTCAATTTTTC 79 Query 101 G-CTGGAATTCTCCTTCCGGCTATTGTTCTAATTATT-ACTTCAGTAAGAGAAAACATAA 158 | | |||| | | ||| | |||||||| || |||||||||||| ||||||| | Sbjct 80 GCCGGGAA---T--AT-CGG----TCTTCTAATT-TTCACTTCAGTAAGATAAAACATGA 128 Query 159 GCGACACTTCACGTCCTCTGTTTTGTCTCCGGTTACTCCTATTGTCCATAACCTGTTCGA 218 |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| Sbjct 129 GCGACACTTCACGTCCTCTGTTTTGTCTCCAGTTACTCCTAGTGTATATAACCTGTTCGA 188 Query 219 CGAATTGCCTGAGAGAGAGAATAGGACTATGGAGTCGAGCTTTATGTTCTTACGAGATGT 278 |||| |||| ||||||| ||||||||| ||||| | || ||||||||||| |||||||| Sbjct 189 CGAAATGCCCAAGAGAGATAATAGGACTGTGGAGGCTAGTTTTATGTTCTTGCGAGATGT 248 Query 279 ACTTAGATCCTTTATGATGAGAACAGAGACAGAGACTCCGAGGAGTGTCCATTGTTTCGC 338 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 249 ACTTAGATCCTTTATGATGAGAACAGAGACAGAGACTCCGAGGAGTATCCATTGTTTCGC 308 Query 339 TCTGAAGTGTGGTTTACTCCAAGATTTAGCTACATCTTCGAAGCTTCTGACGTTTTACGG 398 ||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||||| Sbjct 309 TCTGAAGTGTGGTTTCCTCCAAGATTTAGCTACATCTTCAAAGCTTCTAACGATTTACGG 368 Query 399 TAGAACCGGGGAGTTAGTATCTTCTTCGTGTCTGTTTGATGAATTGAAAGAGAAAGATGT 458 |||||||||||| || || ||||||| | ||||||||| ||||||||||||||||||||| Sbjct 369 TAGAACCGGGGACTTGGTGTCTTCTTTGGGTCTGTTTGGTGAATTGAAAGAGAAAGATGT 428 Query 459 GATTGTTTGGAACAGTATGATCACT-GCTTTGAATCAAAATGGTCGTTACATTGCAGCTG 517 ||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| Sbjct 429 GATTGTTTGGAACAGTATGATCACTAG-TTTGAATCAAAATGGTCGTTACATGGCAGCTG 487 Query 518 TTGGATTGTTTATTGAGATGATTCATAAAGGAAATGAGTTTGATTCAACCACGCTTTTAC 577 |||||||||| |||||||||||||||| || |||||||||||||| ||||||||||||| Sbjct 488 TTGGATTGTTCGTTGAGATGATTCATAAGGGGAATGAGTTTGATTCGACCACGCTTTTAC 547 Query 578 TTGCAGCTTCTGCGTTATCTAGTCTACATCTTTCGAGA-AAATGTTCAATGCTTCATTGT 636 |||||| ||| |||||||||||| |||||||||| | | |||||| ||||| |||||||| Sbjct 548 TTGCAGTTTCGGCGTTATCTAGTTTACATCTTTC-AAAGAAATGTCCAATGGTTCATTGT 606 Query 637 TTAGCAATAGAGACTGGTTTGGTTGGGGATTCTAGTTTGTGCAATGCATTGATGAATCTA 696 || ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 607 TTGGCAATAGAGACTGGTTTGGTTTCGGATTCTAGCTTGTGCAATGCATTGATGAATCTA 666 Query 697 TATGCAAAAGGCGAGAACTTGAGCTCCGCAGAGTGTGTGTTCACGCATATGGAGCATCGA 756 ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 667 TATGCAAAAGGCGAGGACTTGAGCTCCGCAGAGTGCGTGTTCACGCATATGGAGCACCGA 726 Query 757 GACATTGTTTCTTGGAACACGATCATGACTAAATGTCTTGCAAAT-GGTCATCCCAGGAA 815 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 727 GACATTGTTTCTTGGAACACGATCATGACTAAATGTCTTGCAAATGGGT-ATCCCAGGAA 785 Query 816 ATCGTTGCA-ATATTTCAAGTCGATGACTGGTTCAGGACAAGAAGCTGATACTGTGACTT 874 ||| || | ||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 786 TTCGCTG-ATATATTTCAAGTCGATGATTGGTTCAGGACAAGAAGCTGATAATGTGACTT 844 Query 875 TTTCATGCGTTATCTCAGCTTGCTCTTCTATTGAAGAACTTACTTTGGGTGAATCACTCC 934 ||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||| |||| Sbjct 845 TTTCATGCGTTATATCAGCTTGCTCTTGTCTTGAAGAACTTCCTTTGGGTGAATCCCTCC 904 Query 935 ACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTCATGTCTCTGTGGGCAACTCGA 994 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 905 ACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTCATGTCTCTGTGGCCAACTCGA 964 Query 995 TCATTTCGATGTACTCAAAATGCGGGGACA-CGGAGGCTGCGGAAACTGTGTTTGAAGAA 1053 |||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| Sbjct 965 TCATTTCGATGTACTCAAAATGTGGGGACATC-GAGGCTGCGGAAACTGTGTTTGAAGAA 1023 Query 1054 TTAGTGTGCAGGGATGTTATTTCTTCGAACGCAATCCTTAATGGG-TTTGCTGCAAATGG 1112 ||| |||||| |||||||||||||| ||| ||||||||||||||| ||| |||||||||| Sbjct 1024 TTATTGTGCAAGGATGTTATTTCTTGGAATGCAATCCTTAATGGGCTTT-CTGCAAATGG 1082 Query 1113 AATGTTTGAAGAAGCATTTGGTATTTTGAACCAAATGCAATCGGTGGATAAGATTCAGCC 1172 ||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 1083 AATGTTTGAGGAAGCATTTGGTATTTTGAAGGAAATGCAGTCGGTGGATAAGATTCAGCC 1142 Query 1173 TGATATCGCCACTGTGGTTTCAATAACTTCCATATGTGGTGATTTAAGTTTTTCACGAGA 1232 ||||||| |||| |||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 1143 TGATATCTCCACCGTGGTTTCAATAACTTCCATATGTGGTGATTTTTGTTTGTCACGAGA 1202 Query 1233 GGGAAGAGCAGTTCATGGTTATACGGTTCGCATGGAGATGCAATCCAGAGCATTAGAGGT 1292 |||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1203 GGGAAGAGCAATTCATGGTTATATGGTTCGCAGGGAGATGCAATCCAGAGCATTAGAGGT 1262 Query 1293 AATAAACAGCGTTATTGATATGTATGGTAAATGTGGCTTAACAACTCAGGCTGAGTTGTT 1352 |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || Sbjct 1263 AATAAACAGCGTTATTGATATGTACGGTAAATGTGGCTTAACAAGTCAGGCTGAGTTTTT 1322 Query 1353 GTTCAAGACAACAACACATCGAGACTTGGTTTCGTGGAACTCGATGATATCTGCTTTCT- 1411 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1323 GTTCAAGACCACAACACATCGAGACTTGGTTTCGTGGAACTCGATGATATCTGCTTT-TG 1381 Query 1412 CGCAAAACGGCTTTACGCACA-AAGCTAAGAATCTGTTCAAGGAAGTTGTCAGTGAGTAT 1470 |||||||||| ||||| || | |||||||||||||||||| ||||||||||||||||||| Sbjct 1382 CGCAAAACGGGTTTACACA-AGAAGCTAAGAATCTGTTCAGGGAAGTTGTCAGTGAGTAT 1440 Query 1471 TCTTGTTCAAAGTTTAGCTTGTCAACTGTCTTGGCAATTCTTACGTCTTGTGATTCCTCT 1530 |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1441 ACTTGTTCAAAGTTTAGCTTGTCGACTGTGTTGGCAATTCTTACGTCTTGTGATTCCTCT 1500 Query 1531 GACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAAAGCTAGGGGACCTAACT 1590 || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1501 GATTCTCTCATTTTTGGAAAATCAGTCCACTGTTGGCTGCAAAAGCTAGGGGACCTAACT 1560 Query 1591 TCAGCATTCCTGCGGTTAGAGACGATGTCCGAAACAAGAGATCTCACATCTTGGAACTCT 1650 |||||||| || | |||||||| ||| | ||||||||| ||||||||||||||||||||| Sbjct 1561 TCAGCATTTCTTCTGTTAGAGATGATATTCGAAACAAGGGATCTCACATCTTGGAACTCT 1620 Query 1651 GTAATCTCTGGCTGCGCATCAAGTGGTCACCATTTAGAATCATTGAGAGCGTTTCAAGCA 1710 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1621 GTTATCTATGGCTGCGCATCAAGTGGTCACCATTTAGAATCATTGAGAGCGTTTCAAGCA 1680 Query 1711 ATGAGTCGTGAAGGGAAAATTCGTCATGACTTGATTACTCTCCTGGGTACTATTTCAGCT 1770 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 1681 ATGAGTCGTGAAGGGAATATTCGTCATGACTTGATTACTCTTCTGGGTACTATTTCAGCT 1740 Query 1771 AGTGGAAACCTCGGACTGGTCTTACAAGGAAGGTGCTTTCATGGTCTAGCTATTAAAAGT 1830 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1741 AGTGGAAACCTCAGACTGGTCTTACAAGGAAGGTGCCTTCATGGTCTAGCTATTAAAAGT 1800 Query 1831 CTAAGAGAACTTGACACCCAACTGCAGAATACATTGATCACCATGTATGGTAGATGTAAA 1890 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1801 CTGAGAGAACTTGACACCCAACTGCAGAATACGTTGATCACCATGTATGGTAGATGTAAA 1860 Query 1891 GACATTGAGAGTGCAGTGAAGGTTTTTGGCTTAATCTCTGACCCTAACTTGTGTTCTTGG 1950 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1861 GACACTGAGAGTGCAGTGAAGGTTTTTGGCTTGATCTCTGACCCTAACTTGTGTTCCTGG 1920 Query 1951 AACTGTGTGATATCAGCTTTGTCTCAGAACAAAGCTGGACGAGAAGTGTTTCAACTCTTC 2010 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 1921 AACTGTGTGATATCAGCTTTATCTCAGAACAAAGCTGGACGCGAAGTGTTTCAACTCTTC 1980 Query 2011 AGAAACCTCAAGTTAGAGCCAAACGAGATCACATTTGTTGGTCTTCTGTCTGCGTCGACT 2070 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1981 AGAAACCTCAAGTTAGAGCCAAACGAGATCACATTTGTTGGTCTTCTGTCTGCCTCGACT 2040 Query 2071 CAGCTTGGGTCAACGAGCTATGGTATGCAGGCACATTGTCATCTCATTCGTCGTGGGTTT 2130 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2041 CAGCTTGGGTCAACAAGCTATGGTATGCAGGCACACTGTCATCTCATTCGTCGTGGGTTT 2100 Query 2131 CAAGCTAACCCTTTTGTCAGTGCAGCACTTGTGGACATGTACAGTAGCTGCGGGATGCTA 2190 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 2101 CAAGCTAACCCTTTTGTCAGTGCAGCACTAGTGGATATGTACAGTAGCTGCGGGATGCTA 2160 Query 2191 GAAACTGGCATGAAGGTGTTTAGAAACTCGGGGGTGAATTCAATTTCTGCTTGGAACTCC 2250 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2161 GAAACTGGCATGAAGGTGTTTAGAAACTCGGGGGTGAAATCAATTTCTGCTTGGAACTCA 2220 Query 2251 GTTATCTCTGCACATGGATTCCATGGAATGGGAGAGAAGGCAATGGAGCTATTCAAGGAA 2310 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2221 GTTATCTCTGCATATGGATTCCATGGAATGGGAGAGAAGGCAATGGAGCTATTCAAGGAA 2280 Query 2311 CTGAGTAGT---AACTCAGAGATGGAACCAAACAAGAGCAGTTTCATAAGCCTGTTGTCA 2367 |||||||| ||||||| |||| ||||||||||||||| |||||||||||| |||||| Sbjct 2281 ATGAGTAGTGGTAACTCAGGGATGAAACCAAACAAGAGCACTTTCATAAGCCTATTGTCA 2340 Query 2368 GCTTGCAGCCACTCTGGGTTTATTGATGAAGGTCTAAGTTATTACAAGCAAATGGAGGAA 2427 ||||| ||||||||||||||||| ||||||||||||| |||||||| |||||||||||| Sbjct 2341 GCTTGTAGCCACTCTGGGTTTATAAATGAAGGTCTAAGATATTACAACCAAATGGAGGAA 2400 Query 2428 AAATTTGGGGTTAAACCAGTTACTGAGCATCGGGTTTGGATTGTTGACATGCTTGGCCGG 2487 ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| Sbjct 2401 AAATTTGGGGTTAAACCAGTTACCGAGCATTGGGTTTGCATTGTTGACATGCTTGGCCGG 2460 Query 2488 GCAGGGAAACTGAGAGAAGCTTATGAGTTCATCACAGGGATTGGTGAGCCACAAAAAGCA 2547 |||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 2461 GCAGGGAAGCTGAAAGAAGCTTATGAATTCATCATAGGGATTGGTGAGCCACAAAAAGCA 2520 Query 2548 GGTGTATGGGGAGCGTTGTTGAGCGCTTGCAACTATCATGGGGATACAAAGTTGGGAAAA 2607 ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| | Sbjct 2521 GGTGTGTGGGGAGCTTTGTTGAGCGCTTGTAACTATCATGGGGATACAAAGTTGGGAACA 2580 Query 2608 GAAGTTGCAGAAGTTTTGTTTGAAATGGAACCAGACAATGCATCTTATTACATCTCGTTG 2667 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2581 GAAGTTGCAGAAGTTTTGTTTGAATTGGAACCAGACAATGCATCTTATTACATCTCGTTG 2640 Query 2668 GCAAATACTTATGTTGGATTGGGAGGTTGGGAAGAAGCTGTAAGACTACGGAAGATGGTG 2727 || |||||||||||||| ||||| |||||||| ||||||||| | ||||||||||| ||| Sbjct 2641 GCGAATACTTATGTTGGGTTGGGTGGTTGGGATGAAGCTGTACGGCTACGGAAGATTGTG 2700 Query 2728 GAGGATAATGCCTTGAAAAAGCTTCCTGGTTACAGTGTTATTGACGTTAGGTGTT 2782 ||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 2701 GAGGATAATGCATTGAAGAAGCTACCTGGTTACAGTGTTATTGACGTTAG-TGTT 2754 > Ahg354569 jgi|Araly1|354569|fgenesh1_pg.C_scaffold_7001742 Length=1602 Score = 472 bits (255), Expect = 9e-132 Identities = 306/331 (92%), Gaps = 2/331 (1%) Strand=Plus/Plus Query 802 GGTCATCCCAGGAAATCGTTGCAATATTTCAAGTCGATGACTGGTTCAGGACAAGAAGCT 861 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 782 GGT-ATCCCAGGAAATCGTTGAAATATTTCAAGTCGATGACTGGTTCAGGACAAGAGGCT 840 Query 862 GATACTGTGACTTTTTCATGCGTTATCTCAGCTTGCTCTTCTATTGAAGAACTTACTTTG 921 |||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct 841 GATAGTGTGACTTTTTCATGCGTTATCTCAGCTTGCTCTTCTCTTGAAAAACTTCCTTTG 900 Query 922 GGTGAATCACTCCACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTCATGTCTCT 981 |||||| | |||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 901 GGTGAACCCCTCCACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTGAGGTCTCT 960 Query 982 GTGGGCAACTCGATCATTTCGATGTACTCAAAATGCGGGGACACGGAGGCTGCGGAAACT 1041 |||| |||||| ||||||||||||||||||||||| | |||| | ||||| ||||||||| Sbjct 961 GTGGCCAACTCCATCATTTCGATGTACTCAAAATGTGAGGACGCCGAGGC-GCGGAAACT 1019 Query 1042 GTGTTTGAAGAATTAGTGTGCAGGGATGTTATTTCTTCGAACGCAATCCTTAATGGGTTT 1101 |||||||||||||| |||||| |||||||||||||| ||| |||||||||||||||||| Sbjct 1020 TTGTTTGAAGAATTATTGTGCAAGGATGTTATTTCTTGGAATGCAATCCTTAATGGGTTT 1079 Query 1102 GCTGCAAATGGAATGTTTGAAGAAGCATTTG 1132 ||||||||||||||||| || |||||||||| Sbjct 1080 GCTGCAAATGGAATGTTCGAGGAAGCATTTG 1110 Score = 267 bits (144), Expect = 4e-70 Identities = 195/219 (89%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 515 CTGTTGGATTGTTTATTGAGATGATTCATAAAGGAAATGAGTTTGATTCAACCACGCTTT 574 ||||||||||||| ||||||||||||| || ||| ||||||||||||| || ||||| | Sbjct 563 CTGTTGGATTGTTCGTTGAGATGATTCAGAAGGGATATGAGTTTGATTCTACGACGCTCT 622 Query 575 TACTTGCAGCTTCTGCGTTATCTA-GTCTACATCTTTCGAGA-AAATGTT-CAATGCTTC 631 ||||||||||||| |||||||| | || |||||||||| | | |||| || ||||| ||| Sbjct 623 TACTTGCAGCTTCGGCGTTATCCACGT-TACATCTTTC-AAAGAAAT-TTCCAATGGTTC 679 Query 632 ATTGTTTAGCAATAGAGACTGGTTTGGTTGGGGATTCTAGTTTGTGCAATGCATTGATGA 691 |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 680 ATTGTTTAGCAATAGAGACTAGTTTGGTTTCGGATTCTAGTTTGTGCAATGCATTGATGA 739 Query 692 ATCTATATGCAAAAGGCGAGAACTTGAGCTCCGCAGAGT 730 ||||||||||||||||||| ||||||||||| |||||| Sbjct 740 TTCTATATGCAAAAGGCGAGGACTTGAGCTCCACAGAGT 778 Score = 148 bits (80), Expect = 2e-34 Identities = 98/107 (92%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1580 GGGACCTAACTTCAGCATTCCTGCGGTTAGAGACGATGTCCGAAACAAGAGATCTCACAT 1639 ||||||| |||||||||||||||| ||| |||||||| || |||||||| |||||||||| Sbjct 1407 GGGACCTTACTTCAGCATTCCTGCTGTTCGAGACGATATCGGAAACAAGGGATCTCACAT 1466 Query 1640 CTTGGAACTCTGTAATCTCTGGCTGCGCATCAAGTGGTCACCATTTA 1686 ||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 1467 CTTGGAACTCTGTTATCGATGGCTGCGCATCAAGTGGTCACCATTTA 1513 Score = 111 bits (60), Expect = 2e-23 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 1516 TCTTGTGATTCCTCTGACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAAAG 1575 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1282 TCTTGTGATTCGTCTGACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAATG 1341 Query 1576 CTAGGG 1581 |||||| Sbjct 1342 CTAGGG 1347 Score = 93.5 bits (50), Expect = 8e-18 Identities = 58/61 (95%), Gaps = 3/61 (5%) Strand=Plus/Plus Query 1231 GAGGGAAGAGCAGTTCATGGTTATACGGTTCGCATGG-AGATGCAATCCAGAGCATTAGA 1289 ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| Sbjct 1110 GAGGGAAGAGCAGTTCATGGTTATACGGTTCGC-TGGGAGATGCAATCCAGA-CATTAGA 1167 Query 1290 G 1290 | Sbjct 1168 G 1168 > Ahg951804 jgi|Araly1|951804|scaffold_17700003.1 Length=480 Score = 396 bits (214), Expect = 5e-109 Identities = 254/273 (93%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 1066 GATGTTATTTCTTCGAACGCAATCCTTAATGGGTTTGCTGCAAATGGAATGTTTGAAGAA 1125 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||| Sbjct 208 GATGTTATTTCTTGGAATGCAATCCTTAATGGGTTTGCTGCAAATGGAATGTTCGAGGAA 267 Query 1126 GCATTTGGTATTTTGAACCAAATGCAATCGGTGGATAAGATTCAGCCTGATATCGCCACT 1185 ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 268 GCATTTGGTGTTTTGAAGGAAATGCAATCGGTGGATAAGATCCAGCCTGATATCGCCACC 327 Query 1186 GTGGTTTCAATAACTTCCATATGTGGTGATTTAAGTTTTTCACGAGAGGGAAGAGCAGTT 1245 |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 328 GTGGTTTCAATAACTTCCATATGTGGTGATTTCTGTTTGTCACGAGAGGGAAGAGCAGTT 387 Query 1246 CATGGTTATACGGTTCGCATGG-AGATGCAATCCAGAGCATTAGAGGTAATAAACAGCGT 1304 |||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| || Sbjct 388 CATGGTTATACGGTTCGC-TGGGAGATGCAATCCAGAGCTTTAGAGGTAATAAACAGTGT 446 Query 1305 TATTGATATGTATGGTAAATGTGGCTTAACAAC 1337 |||||||||||| ||||||||||||||| ||| Sbjct 447 TATTGATATGTAACGTAAATGTGGCTTAA-AAC 478 Score = 305 bits (165), Expect = 9e-82 Identities = 193/207 (93%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 817 TCGTTGCAATATTTCAAGTCGATGACTGGTTCAGGACAAGAAGCTGATACTGTGACTTTT 876 |||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 1 TCGTTGAAATATTTCAAGTCGATGACTGGTTCAGGACAAGAGGCTGATAGTGTGACTTTT 60 Query 877 TCATGCGTTATCTCAGCTTGCTCTTCTATTGAAGAACTTACTTTGGGTGAATCACTCCAC 936 ||||||||||||||||||||||||||| ||||| ||||| ||||||||||| | |||||| Sbjct 61 TCATGCGTTATCTCAGCTTGCTCTTCTCTTGAAAAACTTCCTTTGGGTGAACCCCTCCAC 120 Query 937 GGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTCATGTCTCTGTGGGCAACTCGATC 996 |||||||||||||||||||||||||||||||||||| | |||||||||| |||||| ||| Sbjct 121 GGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCTGAGGTCTCTGTGGCCAACTCCATC 180 Query 997 ATTTCGATGTACTCAAAATGCGGGGAC 1023 |||||||||||||||||||| | |||| Sbjct 181 ATTTCGATGTACTCAAAATGTGAGGAC 207 > Ahg945968 jgi|Araly1|945968|scaffold_702197.1 Length=252 Score = 267 bits (144), Expect = 4e-70 Identities = 191/212 (90%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 2272 CATGGAATGGGAGAGAAGGCAATGGAGCTATTCAAGGAACTG-----AGTA---GTAACT 2323 ||| ||||||||||||||||||||||||||||||||||| || |||| |||||| Sbjct 22 CAT-GAATGGGAGAGAAGGCAATGGAGCTATTCAAGGAAATGATATAAGTAGTGGTAACT 80 Query 2324 CAGAGATGGAACCAAACAAGAGCAGTTTCATAAGCCTGTTGTCAGCTTGCAGCCACTCTG 2383 ||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 81 CAGGGATGGAACCAAACAAGAGCACTTTCATAAGCCTATTGTCAGCTTGCAGCCACTCTG 140 Query 2384 GGTTTATTGATGAAGGTCTAAGTTATTACAAGCAAATGGAGGAAAAATTTGGGGTTAAAC 2443 ||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||| Sbjct 141 GGTTTATAGATGAAGGTCTAAGATATTACAACCAAATGGAGAAAAAATTTGGGGTTAAAC 200 Query 2444 CAGTTACTGAGCATCGGGTTTGGAT-TGTTGA 2474 ||||||| |||||||| ||||| || |||||| Sbjct 201 CAGTTACCGAGCATCGTGTTTGTATCTGTTGA 232 > Ahg945959 jgi|Araly1|945959|scaffold_702188.1 Length=252 Score = 267 bits (144), Expect = 4e-70 Identities = 191/212 (90%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 2272 CATGGAATGGGAGAGAAGGCAATGGAGCTATTCAAGGAACTG-----AGTA---GTAACT 2323 ||| ||||||||||||| ||||||||||||||||||||| || |||| |||||| Sbjct 22 CAT-GAATGGGAGAGAAAGCAATGGAGCTATTCAAGGAAATGATATAAGTAGTGGTAACT 80 Query 2324 CAGAGATGGAACCAAACAAGAGCAGTTTCATAAGCCTGTTGTCAGCTTGCAGCCACTCTG 2383 ||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 81 CAGGGATGGAACCAAACAAGAGCACTTTCATAAGCCTATTGTCAGCTTGCAGCCACTCTG 140 Query 2384 GGTTTATTGATGAAGGTCTAAGTTATTACAAGCAAATGGAGGAAAAATTTGGGGTTAAAC 2443 ||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 141 GGTTTATAGATGAAGGTCTAAGATATTACAACCAAATGGAGGAAAAATTTGGGGTTAAAC 200 Query 2444 CAGTTACTGAGCATCGGGTTTGGAT-TGTTGA 2474 ||||||| |||||||| ||||| || |||||| Sbjct 201 CAGTTACCGAGCATCGTGTTTGTATCTGTTGA 232 > Ahg354574 jgi|Araly1|354574|fgenesh1_pg.C_scaffold_7001747 Length=1230 Score = 267 bits (144), Expect = 4e-70 Identities = 195/219 (89%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 515 CTGTTGGATTGTTTATTGAGATGATTCATAAAGGAAATGAGTTTGATTCAACCACGCTTT 574 ||||||||||||| ||||||||||||| || ||| ||||||||||||| || ||||| | Sbjct 512 CTGTTGGATTGTTCGTTGAGATGATTCAGAAGGGATATGAGTTTGATTCTACGACGCTCT 571 Query 575 TACTTGCAGCTTCTGCGTTATCTA-GTCTACATCTTTCGAGA-AAATGTT-CAATGCTTC 631 ||||||||||||| |||||||| | || |||||||||| | | |||| || ||||| ||| Sbjct 572 TACTTGCAGCTTCGGCGTTATCCACGT-TACATCTTTC-AAAGAAAT-TTCCAATGGTTC 628 Query 632 ATTGTTTAGCAATAGAGACTGGTTTGGTTGGGGATTCTAGTTTGTGCAATGCATTGATGA 691 |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 629 ATTGTTTAGCAATAGAGACTAGTTTGGTTTCGGATTCTAGTTTGTGCAATGCATTGATGA 688 Query 692 ATCTATATGCAAAAGGCGAGAACTTGAGCTCCGCAGAGT 730 ||||||||||||||||||| ||||||||||| |||||| Sbjct 689 TTCTATATGCAAAAGGCGAGGACTTGAGCTCCACAGAGT 727 Score = 265 bits (143), Expect = 2e-69 Identities = 162/171 (95%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 802 GGTCATCCCAGGAAATCGTTGCAATATTTCAAGTCGATGACTGGTTCAGGACAAGAAGCT 861 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 731 GGT-ATCCCAGGAAATCGTTGAAATATTTCAAGTCGATGACTGGTTCAGGACAAGAGGCT 789 Query 862 GATACTGTGACTTTTTCATGCGTTATCTCAGCTTGCTCTTCTATTGAAGAACTTACTTTG 921 |||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct 790 GATAGTGTGACTTTTTCATGCGTTATCTCAGCTTGCTCTTCTCTTGAAAAACTTCCTTTG 849 Query 922 GGTGAATCACTCCACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCT 972 |||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 850 GGTGAACCCCTCCACGGGTTGGTTATAAAATCAGGTTATAGTCCAGAAGCT 900 Score = 228 bits (123), Expect = 2e-58 Identities = 140/148 (95%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 1145 AAATGCAATCGGTGGATAAGATTCAGCCTGATATCGCCACTGTGGTTTCAATAACTTCCA 1204 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 905 AAATGCAATCGGTGGATAAGATCCAGCCTGATATCGCCACCGTGGTTTCAATAACTTCCA 964 Query 1205 TATGTGGTGATTTAAGTTTTTCACGAGAGGGAAGAGCAGTTCATGGTTATACGGTTCGCA 1264 ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 965 TATGTGGTGATTTCTGTTTGTCACGAGAGGGAAGAGCAGTTCATGGTTATACGGTTCGC- 1023 Query 1265 TGG-AGATGCAATCCAGAGCATTAGAGG 1291 ||| |||||||||||||||| ||||||| Sbjct 1024 TGGGAGATGCAATCCAGAGCTTTAGAGG 1051 > Ahg951803 jgi|Araly1|951803|scaffold_17700002.1 Length=405 Score = 233 bits (126), Expect = 4e-60 Identities = 164/183 (90%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 147 GAGAAAACATAAGCGACACTTCACGTCCTCTGTTTTGTCTCCGGTTACTCCTATTGTCCA 206 |||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 24 GAGAAAACATGAGCGACACTTCACGTCCTCTGTCTTGTCTCCGGCTACTCCTATTGTCCA 83 Query 207 TAACCTGTTCGACGAATTGCCTGAGAGAGAGAATAGGACTATGGAGTCGAGCTTTATGTT 266 ||| ||||||||||| ||| ||| |||| |||||||| ||||||||| ||| |||| Sbjct 84 TAAAGTGTTCGACGAAAAGCCCAAGATAGAGGATAGGACTGTGGAGTCGATTTTTTTGTT 143 Query 267 CTTACGAGATGTACTTAGATCCTTTATGATGAGAACAGAGACAGAGACTCCGAGGAGTGT 326 |||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 144 CTTACGAGATGTTCTTAGATCCTCCATGATGATAACAGAGACAGAGACTCCGAGGAGTGT 203 Query 327 CCA 329 ||| Sbjct 204 CCA 206 Score = 209 bits (113), Expect = 7e-53 Identities = 179/209 (86%), Gaps = 11/209 (5%) Strand=Plus/Plus Query 356 TCCAAGATTTAGCTACATCTTCGAAGCTTCTGACGTTTTACGGTAGAACCGGGGAGTTAG 415 ||||||||||| ||||||||||||||||||||||| ||||| | | ||||| |||| Sbjct 203 TCCAAGATTTAACTACATCTTCGAAGCTTCTGACGCTTTAC----G--CGGGGGACTTAG 256 Query 416 TATCTTCTTCGTGTCTGTTTGATGAATTGAAAGAGAAAGATGTGATTGTTTGGAACAGTA 475 | ||||||| | | || |||| |||||||||||| ||||||||||||||||||||||||| Sbjct 257 TGTCTTCTTTGGGCCTATTTGGTGAATTGAAAGATAAAGATGTGATTGTTTGGAACAGTA 316 Query 476 TGATCACTGCTTTGAATCAAAATGGTCGTTACATT----G-CAGCTGTTGGATTGTTTAT 530 ||||||||| || |||||||||||||| ||||||| | |||||||||||||||| | Sbjct 317 TGATCACTGGTTCGAATCAAAATGGTCATTACATTACATGGCAGCTGTTGGATTGTTCGT 376 Query 531 TGAGATGATTCATAAAGGAAATGAGTTTG 559 |||||||||||| || ||| ||||||||| Sbjct 377 TGAGATGATTCAGAAGGGATATGAGTTTG 405 > Ahg951805 jgi|Araly1|951805|scaffold_17700004.1 Length=397 Score = 111 bits (60), Expect = 2e-23 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 1516 TCTTGTGATTCCTCTGACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAAAG 1575 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 96 TCTTGTGATTCGTCTGACTCTCTCATCTTTGGCAAATCAGTCCACTGTTGGCTGCAAATG 155 Query 1576 CTAGGG 1581 |||||| Sbjct 156 CTAGGG 161 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105624249385 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5