BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19230.2
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492925 jgi|Araly1|492925|fgenesh2_kg.7__2358__AT4G19230.2 2595 0.0
Ahg915575 jgi|Araly1|915575|Al_scaffold_0008_326 1190 0.0
> Ahg492925 jgi|Araly1|492925|fgenesh2_kg.7__2358__AT4G19230.2
Length=1909
Score = 2595 bits (1405), Expect = 0.0
Identities = 1554/1623 (96%), Gaps = 22/1623 (1%)
Strand=Plus/Plus
Query 1 ATCACAAACATTTCTTCCATTACA-T-T-A-AAACTC-CAAAAAATTCATTTTTG-TTTT 54
|||||||||||||||||||||||| | | | ||| | |||||| |||||||||| ||||
Sbjct 1 ATCACAAACATTTCTTCCATTACATTATAACAAAAACACAAAAATTTCATTTTTGTTTTT 60
Query 55 C------TTTTAGAGTTCACAAGTTCTTCGTTGTTCAGCTACTCCCACTGTC-ATAACAC 107
| |||||||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct 61 CTTATAATTTTAGAG-TCACAAGTTCTTCGTTGTTCAGCTACTCCCACTGTCAAAAACAC 119
Query 108 GAAGTGGGtttttttCTGATCAAAGAACAAAAACAAAAATGGATATCTCCGCCTTGTTTC 167
|||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 120 GAAGTGGG--TTTTTCTGATCAAAGAACAAAAAAAAAAATGGATTTCTCCGCCTTGTTTC 177
Query 168 TCACTCTCTTCGCCGGAAGTCTCTTCCTTTACTTTCTCCGGTGTCTAATCTCTCAGCGCC 227
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCACTCTCCTCGCCGGAAGTCTCTTCCTTTACTTTCTCCGGTGTCTAATCTCTCAGCGCC 237
Query 228 GCTTTGGATCTTCCAAACTCCCACTCCCTCCGGGAACAATGGGTTGGCCTTACGTCGGAG 287
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GCCTTGGATCTTCCAAACTCCCACTCCCTCCGGGAACAATGGGTTGGCCTTACGTCGGAG 297
Query 288 AAACTTTCCAGCTTTACTCTCAAGACCCTAATGTCTTTTTCCAATCAAAACAGAA-AAGG 346
|||||||||||||||| ||||||||||| ||||||||||||||| ||||||| || ||||
Sbjct 298 AAACTTTCCAGCTTTATTCTCAAGACCCAAATGTCTTTTTCCAAACAAAACA-AAGAAGG 356
Query 347 TATGGATCGGTGTTTAAGACTCATGTATTGGGATGTCCATGTGTGATGATCTCGAGTCCA 406
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 357 TATGGATCGGTGTTTAAGACCCATGTATTGGGATGTCCATGTGTGATGATCTCGAGTCCA 416
Query 407 GAGGCTGCTAAGTTCGTGCTGGTGACGAAATCTCATCTCTTTAAACCAACTTTTCCGGCG 466
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 417 GAAGCTGCCAAGTTCGTGCTGGTGACGAAATCTCATCTCTTTAAACCGACTTTTCCGGCG 476
Query 467 AGTAAAGAGAGGATGTTGGGGAAACAAGCCATCTTCTTCCACCAGGGTGATTATCACGCT 526
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 477 AGTAAAGAGAGGATGTTGGGGAAACAAGCCATCTTCTTCCACCAAGGTGATTACCACGCT 536
Query 527 AAACTCAGGAAGCTTGTTCTTCGTGCTTTTATGCCTGAATCTATCAGAAACATGGTTCCT 586
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 537 AAACTCAGGAAGCTTGTTCTTCGTGCTTTCATGCCTGAAGCTATCAGAAACATGGTTCCT 596
Query 587 GATATTGAATCCATCGCTCAAGACTCTCTCCGAAGTTGGGAGGGAACAATGATCAACACT 646
||||| ||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||
Sbjct 597 GATATCGAATCAATCGCTCAAGATTCTCTCCGAATTTGGGAAGGAACAATGATCAACACT 656
Query 647 TACCAAGAAATGAAAACATACACCTTCAACGTTGCGTTGCTATCGATCTTCGGAAAAGAC 706
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 657 TACCAAGAAATGAAAACATACACCTTCAACGTTGCGTTGCTCTCGATCTTCGGAAAAGAC 716
Query 707 GAGGTTTTATACAGAGAAGATCTAAAACGATGCTACTACATTCTCGAGAAAGGTTACAAT 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GAGGTTTTATACAGAGAAGATCTAAAACGATGCTACTACATTCTCGAGAAAGGTTACAAT 776
Query 767 TCGATGCCAGTGAATCTCCCTGGAACACTTTTCCACAAATCAATGAAAGCTCGGAAGGAA 826
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 777 TCGATGCCAGTGAATCTCCCTGGAACACTCTTCCACAAATCAATGAAAGCTCGCAAGGAG 836
Query 827 CTCTCACAGATCCTCGCTAGAATCTTATCAGAGAGAAGACAGAACGGTTCCT-CACACAA 885
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 837 CTCTCACAGATCCTCGCTAGAATCTTATCAGAGAGAAGACAGAACGGTT-CTCCACACAA 895
Query 886 CGATCTTCTCGGATCATTCATGGGAGACAAAGAAGAGCTAACCGACGAACAGATCGCCGA 945
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 896 CGATCTTCTCGGATCATTCATGGGAGACAAAGAAGAGTTAACCGACGAACAGATCGCCGA 955
Query 946 CAACATAATCGGAGTAATCTTCGCCGCTAGAGACACGACGGCGAGTGTGATGTCGTGGAT 1005
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CAACATAATCGGAGTGATCTTCGCCGCTAGAGACACGACGGCGAGTGTGATGTCGTGGAT 1015
Query 1006 CCTCAAGTACCTAGCCGAGAATCCCAACGTTCTAGAAGCCGTTACTGAAGAACAAATGGC 1065
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CCTCAAGTACTTAGCCGAGAATCCCAACGTTCTAGAAGCCGTTACTGAAGAACAAATGGC 1075
Query 1066 AATAAGGAAAGACAAAGAAGAAGGAGAGTCTCTAACTTGGGGAGATACAAAGAAGATGCC 1125
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1076 AATAAGGAAAGACAAAGAAGAAGGAGAGGCTCTAACCTGGGGAGATACAAAGAAGATGCC 1135
Query 1126 ATTAACTTCAAGAGTTATTCAAGAAACATTAAGAGTCGCTTCAATCTTATCTTTCACATT 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 ATTAACTTCAAGAGTTATTCAAGAAACATTAAGAGTCGCTTCAATCTTATCTTTCACATT 1195
Query 1186 CAGAGAAGCTGTCGAAGATGTCGAATACGAAGGATATTTGATACCTAAAGGATGGAAAGT 1245
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1196 CAGAGAAGCTGTCGAAGATGTCGAATACGAAGGTTATTTGATACCTAAAGGATGGAAAGT 1255
Query 1246 GTTACCCCTATTCAGAAACATTCATCATAGTGCTGATATTTTTTCTAATCCGGGGAAATT 1305
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1256 GTTACCGCTTTTCAGAAACATTCATCATAGTGCTGATATTTTTTCAAATCCGGGGAAATT 1315
Query 1306 TGATCCATCAAGATTCGAGGTGGCTCCAAAACCCAATACGTTCATGCCATTTGGCAATGG 1365
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1316 TGATCCATCAAGATTCGAGGTGGCTCCAAAACCCAATACTTTCATGCCATTTGGCAATGG 1375
Query 1366 AACCCACTCGTGTCCTGGAAATGAATTAGCCAAGCTTGAGATGTCTATTATGATTCATCA 1425
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1376 AACCCACTCGTGTCCTGGAAATGAATTAGCAAAGCTTGAGATGTCTATTATGATTCATCA 1435
Query 1426 TCTCACCACCAAGTACAGGTTTGGTCAATTGTTGGAGCGAGCGACGGGATTCAGTATGGG 1485
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1436 TCTCACCACCAAGTACAGGTTTGGTCAATTGTTGGAGAGAGCGACGGGATTCAGTATGGG 1495
Query 1486 CCATTCGCGCTTCCCCAAAACGGACTGCCCATTGTGCTGGCCCGGAAGCCGGAGATCGAA 1545
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 1496 CCATTCGCGCTTCCCCAAAACGGACTGCCCATTGTGTTGGCCCGGAAGTCGGAGATTGAA 1555
Query 1546 GTGTAGAATGACAGAATTGCC-TTTAGCTTTTCTATATTTGGAAAGAGGAGACTAGAGAA 1604
|||||||||||||||||| || ||||||||| | ||||||||||||| |||| |||||||
Sbjct 1556 GTGTAGAATGACAGAATTACCCTTTAGCTTTCC-ATATTTGGAAAGAAGAGATTAGAGAA 1614
Query 1605 GAA 1607
|||
Sbjct 1615 GAA 1617
> Ahg915575 jgi|Araly1|915575|Al_scaffold_0008_326
Length=1392
Score = 1190 bits (644), Expect = 0.0
Identities = 1160/1403 (83%), Gaps = 60/1403 (4%)
Strand=Plus/Plus
Query 146 ATGGATATCTCCGCCTTGTTTCTCACTCTCTTCGCCGGAAG-TCTCTTCCTTTACTTT-C 203
|||||| |||||| ||||||||||||||||| | ||| | ||| || |||| ||| |
Sbjct 1 ATGGATTTCTCCGATTTGTTTCTCACTCTCTTTG-CGGTGGCTCTGTTTCTTT-GTTTAC 58
Query 204 TCCGGTGTCTAATCTCTCAG-CGCCGCTTTGGATCTTCCA--AA-CTCCCACTCCCTCCG 259
|||| | | | ||| | | | |||| | | || |||| || ||||| || ||||||
Sbjct 59 TCCGAT-T-T-ATCGC-CGGAATCCGCCGTAGCTCCTCCACGAATCTCCCTCTTCCTCCG 114
Query 260 GGAACAATGGGTTGGCCTTACGTCGGAGAAACTTTCCAGCTTTACTCTCAAGACCCTAAT 319
||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||||
Sbjct 115 GGAACAATGGGTTATCCTTACGTCGGCGAAACATTCCAACTTTACTCACAAGACCCTAAT 174
Query 320 GTCTTTTTC-CAATCAAAACAGAAAAGGTATGGATCGGTGTTTAAGACTCATGTATTGGG 378
|| || ||| | | ||||||||| ||| || ||||||||||| |||||||||||||||||
Sbjct 175 GTGTTCTTCGC-AGCAAAACAGAGAAGATACGGATCGGTGTTCAAGACTCATGTATTGGG 233
Query 379 ATGTCCATGTGTGATGATCTCGAGTCCAGAGGCTGCTAAGTTCGTGCTGGTGACGAAATC 438
||||||||||||||||||||| || || || || || || || || |||| || || ||
Sbjct 234 ATGTCCATGTGTGATGATCTCAAGCCCTGAAGCAGCGAAATTTGTATTGGTTACCAAGTC 293
Query 439 TCATCTCTTTAAACCAACTTTTCCGGCGAGTAAAGAGAGGATG-TTGGGGAAACAAGCCA 497
|||| | |||||||| ||||||||||||||||||||||||||| || || |||||||| |
Sbjct 294 TCATTTGTTTAAACCGACTTTTCCGGCGAGTAAAGAGAGGATGCTT-GGAAAACAAGCAA 352
Query 498 TCTTCTTCCACCAGGGTGATTATCACGCTAAACTCAGGAAGCTTGTTCTT-CGTGCTTTT 556
|||| |||||||| || |||||||| | ||||| || ||||| ||| || | || ||
Sbjct 353 TCTTTTTCCACCAAGGAGATTATCATTCCAAACTTAGAAAGCTAGTT-TTAAGAGCCTTC 411
Query 557 ATGCCTGAAT-CTATCAGAAACATGGTTCCTGATATTGAATCCATCGCTCAAGACTCTCT 615
||||||| || | |||||||||||||| ||| | |||||||| ||||||||||| || ||
Sbjct 412 ATGCCTG-ATGCAATCAGAAACATGGTCCCTCACATTGAATCAATCGCTCAAGAATCACT 470
Query 616 CCGAA--GTTGGGAGGGAA--CAATGATCAACACTTACCAAGAAATGAAAACATACACCT 671
| || |||||| |||| ||| ||||||||||||||||||||||||||||||| |
Sbjct 471 -C-AATTCTTGGGATGGAACTCAA--CTCAACACTTACCAAGAAATGAAAACATACACTT 526
Query 672 TCAACGTTGCGTTGCTATCGAT-CTTCGGAAAAGACGAGGTTTTATACAGAGAAGATCTA 730
|||| || |||||| | || || | |||| |||||||| ||||| ||| |||||||||||
Sbjct 527 TCAATGTGGCGTTGATCTCAATAC-TCGGCAAAGACGAAGTTTTCTACCGAGAAGATCTA 585
Query 731 AAACGATGCTACTACATTCTCGAGAAAGGTTACAATTCGATGCCAG-TGAATCTCCCTGG 789
|||||||||||||||||||| ||||||||||||||||||||||| | | |||||||| ||
Sbjct 586 AAACGATGCTACTACATTCTAGAGAAAGGTTACAATTCGATGCC-GATTAATCTCCCCGG 644
Query 790 AACACTTTTCCACAAATCAATGAAAGCTCGGAAGGAACT--CTCACAGATCCTCGCTAGA 847
|||||| ||||||||| | ||||||||||| ||||| || |||| | |||||||||| |
Sbjct 645 AACACTATTCCACAAAGCCATGAAAGCTCGTAAGGAGCTAGCTCA-A-ATCCTCGCTA-A 701
Query 848 -ATCTTAT-CAGAGAGAAGACAGAACGGTTCCTCACACAAC-GATCTTCTCGGATCATTC 904
||||||| || | |||||||| ||| || |||||| || ||||||||||||||||||
Sbjct 702 CATCTTATCCA-AAAGAAGACAAAACTCATCTTCACAC-ACAGATCTTCTCGGATCATTC 759
Query 905 ATGGGAGACAAAGAA-GAGCTAACCGACGAACAGATCGCCGACAACATA-ATC-GGAGTA 961
|||| |||||||||| || ||| ||||||||| |||||| | || | | | ||| |
Sbjct 760 ATGGAAGACAAAGAAGGA-TTAAGCGACGAACAAATCGCC-TCTTCACACA-CAGGATTT 816
Query 962 ATCTTCGCCGCTAGAGACACGACGGCGAGTGTGATGTCGTGGATCCTCAAGTACCTAGCC 1021
||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 817 ATCTTCGCCGCTAGAGACACGACGGCGAGTGTGCTGACGTGGATCCTCAAGTACTTAGCT 876
Query 1022 GAGAATCCCAAC-GTTCTAGAAGCCGTTACTGAAGAACAAATGGCAATAAGGAAAGACAA 1080
|| ||| ||||| |||||||||| | ||||| |||||||||||||||||||| ||
Sbjct 877 GATAAT-CCAACTGTTCTAGAAGAAAAAAAAGAAGAGCAAATGGCAATAAGGAAAGATAA 935
Query 1081 AGAAGAAGGAGAGTCTCTAACTTGGGGAGATACAAAGAAGATGCCATTAACTTCA-AGAG 1139
| ||||||||||| ||| ||||||| |||||||||||||||||||||||||| | ||||
Sbjct 936 AAAAGAAGGAGAGAGTCTCACTTGGGAAGATACAAAGAAGATGCCATTAACTT-ATAGAG 994
Query 1140 TTATTCAAGAAACATTAAGAGTC-GCTTCAATCTTATCTTTCACATTCAGAGAAGCTGTC 1198
| || ||||| |||||||||| | ||| ||||||||||||||||||| ||||||||||||
Sbjct 995 TAATCCAAGAGACATTAAGAG-CTGCTACAATCTTATCTTTCACATTTAGAGAAGCTGTC 1053
Query 1199 GAAGATGTCGAATACGAAGGATATTTGATACCTAAAGG-ATGGAAAGTGTTACCCCTATT 1257
|||||||||||||||||||||||||||||||| ||||| ||||||||| || || |||||
Sbjct 1054 GAAGATGTCGAATACGAAGGATATTTGATACC-AAAGGGATGGAAAGTATTGCCGCTATT 1112
Query 1258 CAGAAACATTCATCATAGTGCTGATATTTTTTCTAATCCGGGGAAATTTGATCCATCAAG 1317
|||||| |||||||| | ||||||||| ||||| ||||||| ||||| ||||| || ||
Sbjct 1113 CAGAAATATTCATCACAATGCTGATATATTTTCGGATCCGGGAAAATTCGATCCGTCGAG 1172
Query 1318 ATTCGAGGTGGCTCCAAAACCCAATACGTTCATGCCATTTGGCAA-TGGAACCCACTCGT 1376
|||||| || || || ||||| ||||| |||||||| ||||| || ||| | || || |
Sbjct 1173 ATTCGAAGTTGCGCCGAAACCGAATACATTCATGCCTTTTGG-AAGTGGGATTCATTCTT 1231
Query 1377 GTCCTGGAAATGAATTAGCCAAGCTTGAGATGTCTATTATGATTCATCATCTCACCACCA 1436
|||| || ||||| ||||| || ||||| || ||| || | || |||||||||||||| |
Sbjct 1232 GTCCAGGCAATGAGTTAGCTAAACTTGAAATCTCTGTTCTAATCCATCATCTCACCACTA 1291
Query 1437 AGTACAGGTTTGGTCAATTGTTGGAGCGAGCGACGGGATTCAGTATGGGCCATTCGCGCT 1496
||||||| | |||||||||| ||| | ||||| || |||||||||||||| ||||| ||
Sbjct 1292 AGTACAGAT--GGTCAATTGTAGGACCTAGCGATGGAATTCAGTATGGGCCGTTCGCTCT 1349
Query 1497 TCCCCAAAACGGACTGCCCATTG 1519
||| || || ||| |||| ||||
Sbjct 1350 TCCTCAGAATGGATTGCCTATTG 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74999692405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5