BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19330.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329612 jgi|Araly1|329612|fgenesh1_pm.C_scaffold_7001839 1646 0.0
Ahg327926 jgi|Araly1|327926|fgenesh1_pm.C_scaffold_7000153 110 4e-23
Ahg925158 jgi|Araly1|925158|scaffold_200719.1 93.5 4e-18
Ahg338454 jgi|Araly1|338454|fgenesh1_pg.C_scaffold_2000553 71.3 2e-11
> Ahg329612 jgi|Araly1|329612|fgenesh1_pm.C_scaffold_7001839
Length=1563
Score = 1646 bits (891), Expect = 0.0
Identities = 1320/1522 (87%), Gaps = 50/1522 (3%)
Strand=Plus/Plus
Query 15 TTCGTCATCTTCAACTCCTCCGGAGGATCTTGTTACATCGATGATCGGAAAGTTCGTCGC 74
||| |||||||||||| ||| |||| ||| | | | ||| |||||| |||||||| |
Sbjct 24 TTCATCATCTTCAACTACTCAGGAGAATCACGAAAAAAGGATCATCGGAGAGTTCGTCTC 83
Query 75 TGTCA-TGTCTAACAACGACATACGATACGAAGGCGTTAT-TAGCCTTCTCAATCTGCAA 132
|||| | || ||| ||| | || |||||||||| |||| | ||| | | ||||| |||
Sbjct 84 CGTCACTATC-AACGACGGTAAACAATACGAAGGCATTATCT-GCCATATTAATCTTCAA 141
Query 133 GATTCGAAATTAGGTCTCCAAAACGGTAACAATTCGATTCCAAACCCTCTCCAAGAT-C- 190
||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| |
Sbjct 142 GATTCGACGTTAGGTCTCCAAAACGGTAACCATTCGATTCCAAACCTTCTCCAAGATCCT 201
Query 191 ----TACTGTTTATGATTTTCTTCTTTTCAATCGTTAGGGT-TTATGGAAGAGAGGTTG- 244
|||||||| ||||||||||||||||||| |||| | | ||||||||||||| |
Sbjct 202 AATTTACTGTTTCTGATTTTCTTCTTTTCAATTGTTA-GATGCTATGGAAGAGAGG-AGA 259
Query 245 AGAATGATAATGAGCAACGAGTGTTCCAGGTTCTTAAAGAAG-TTCACAGTCACATGGTA 303
|||||||||||||||||||||| |||| ||||||||||||| || ||||| ||||| |
Sbjct 260 AGAATGATAATGAGCAACGAGTAATCCATGTTCTTAAAGAAGCTT-ACAGTTACATGCTT 318
Query 304 TTTAGAGGAAGTGACATTAAGTCAGTCGAAGTTCTCTCTCTGCC-GCCACCAGCTAGGCA 362
||||| |||||||||||||||| | ||||||||||||||||||| | ||||| | | |||
Sbjct 319 TTTAGCGGAAGTGACATTAAGTTACTCGAAGTTCTCTCTCTGCCAG-CACCACCAAAGCA 377
Query 363 TAATTCTGCT-ATAGGGCA-CGTAGGTAGCT-TGATTACTACCGAAGACGTGAGGAT-TG 418
||| |||| | ||||| || | | | ||| | | || ||||||| ||||||||| | ||
Sbjct 378 TAAATCTG-TCATAGGTCATC-TCGTTAG-TATAATAACTACCGGGGACGTGAGG-TGTG 433
Query 419 AGGGGGTTATCAGCCATGTTAAATTTCATGATTCGATGATATTCATGAAGAATTGTATGT 478
|||| | |||| ||| || || |||| |||||| |||||||||||||||||| ||||||
Sbjct 434 AGGGCCTAATCACCCACGTCAACTTTCGTGATTCTATGATATTCATGAAGAATGGTATGT 493
Query 479 GTTATGGTACTGAGGGGAGGACGAAGAGAAGACGTTCAATAGTAGCTTGCAATCAATTAG 538
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 494 GTTATGGTACTGAGGGGAGGACGAAGAGAAGACGTTCAATAGTAGCTTGCAAACAATTGG 553
Query 539 CTGATGACATCGTTTTGAATATCTTGGCTCGCATATCTACTTCCTACTACCAAACGCTCT 598
|||||||||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||
Sbjct 554 CTGATGACATTATTTTGAATATCTTGGCTCGCATATCCACTTCGTACTACCCAACGCTCT 613
Query 599 CTCTTGTCTCCAAGACCTTCCGTTTGCTCATCCTCTCCAAGGAGCTCGACATGGAACGTT 658
||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||
Sbjct 614 CTCTTGTCTCCAAGAGCTTCCGCTGGCTCATCCTCTCTGAGGAGCTCGACATGGAACGTT 673
Query 659 CCTACCTTGGAACCCGAAAACCATGTGTTTATGTCTGCCTTCAATCTCCCACCCATCCTT 718
||||||||||||||||||||| ||||||||| |||||| |||||||||||| ||||||||
Sbjct 674 CCTACCTTGGAACCCGAAAACAATGTGTTTACGTCTGCTTTCAATCTCCCAGCCATCCTT 733
Query 719 TTGATCGTAGATGGTTCGGTCTCTGGATAAAACCCTATGATCATCAGCCCCTAACCCATT 778
||| ||||||||||||| |||||||||||||||||| |||||||| |||||||||||||
Sbjct 734 TTGGTCGTAGATGGTTCAGTCTCTGGATAAAACCCTGCGATCATCAACCCCTAACCCATT 793
Query 779 GGACGATCGACATCAAGTGTACCGGACATTGGTTGCTACCGATGCCCTCTCCCTATTCTC 838
|||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||
Sbjct 794 GGACGATCGACATCAAGTGTACCGGACACTGGTTGCTACCGATGCCCTCTTCATACTCTC 853
Query 839 GTTGCTTACAAATAGTCCACGAAACTGTTGGTTCAGAAACATACGAAATCGGTGGACAAA 898
|| ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 854 GTCGCTTACAAACACTCCACGAAACTATTGGTTCAGAAACATACGAAATCGGTGGACAAA 913
Query 899 ACATGACA-CCCTCGACTGACGTATGGGTCTATGATAAGCTCATTGGCAAACAACGCAAA 957
||| | | ||||| || ||||| ||||||||||||||||| |||||||||| |||||
Sbjct 914 ACACG-CTGCCCTCAACCGACGTGTGGGTCTATGATAAGCTTATTGGCAAACGGTGCAAA 972
Query 958 G-CTCCTAGCATGATGGTGGCTCGTAAGAACGCCTTTACGTGCGTC-CTTGATGGAAAAC 1015
| | |||||||||||||||||||||||||| ||| |||| |||| | |||||||| ||||
Sbjct 973 GGC-CCTAGCATGATGGTGGCTCGTAAGAATGCCCTTACATGCG-CACTTGATGGGAAAC 1030
Query 1016 TATATGTAATGGGAGGATGTGAAGCGGATGA-ATCTACTCATTGGGCTGAAG-TTTTCGA 1073
||||||||||||||||||||||||| ||||| | | || ||||||||||| | |||||||
Sbjct 1031 TATATGTAATGGGAGGATGTGAAGCAGATGATACC-ACGCATTGGGCTGA-GCTTTTCGA 1088
Query 1074 CCCAAAGACTCAAACTTGGGAAGCATTGCCGGATCCTGGAGTTGAGCTCCGGTACTCTTC 1133
|||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||||||
Sbjct 1089 CCCAAAGACTCAAACTTGGGAAGCTTTACCGGATCCTGGTGTTGAGCTCCGGTCCTCTTC 1148
Query 1134 AGT-AAAGAATATCCAAACGAAGCAAGGAAAAGTGTACGTGAGGAGCAATAAGAAGAACT 1192
||| ||| || |||||||||||||||||||||| ||||||||||||||| |||||| |
Sbjct 1149 AGTTAAA-AAGCTCCAAACGAAGCAAGGAAAAGTTTACGTGAGGAGCAATGTGAAGAATT 1207
Query 1193 TTGTTTACCTTATAAAAGAGTGTATGTGGGAAGTTGCCGAGGAAAACTT-GG-G----TG 1246
|||||||||||| |||||| ||| |||||||||||| |||| |||||| || | ||
Sbjct 1208 TTGTTTACCTTACAAAAGAAAGTAGGTGGGAAGTTGCTGAGGGAAACTTAGGTGACCGTG 1267
Query 1247 AGAGTACCTGTGAGATAGAGAATGTATGCTACTGTTATAG-TAATAAAAGATACTGGTGG 1305
|||||| ||||||||||||||||||||||||| |||| | |||||||| || ||||||
Sbjct 1268 AGAGTATGTGTGAGATAGAGAATGTATGCTACTCTTAT-GCTAATAAAAAATGTTGGTGG 1326
Query 1306 TATGACGCAAAGTGTGAAGAGTGGAGATTAGTCAAAGGTAATTATGGTGGAAAACTTGTT 1365
|||||| |||| ||||||| |||||||| |||||||||| | ||||||||||||| ||
Sbjct 1327 TATGACACAAAATGTGAAGGGTGGAGATCGGTCAAAGGTACTGATGGTGGAAAACTCGTA 1386
Query 1366 GTCTTTTGGGACCGTGCGGTGT-CTCGT-TTAACCGCAACCAAAGAAATTTGGTGTGCTA 1423
|||||||||||||||| || || ||||| ||| | |||||||||||||||||||||||||
Sbjct 1387 GTCTTTTGGGACCGTGTGG-GTTCTCGTATTA-CTGCAACCAAAGAAATTTGGTGTGCTA 1444
Query 1424 TGATTTCTCTTGAAAAGGGACATGATGGTGAAATCTGGGGTCACATCGAATGGCTTGATG 1483
||||||| ||| |||||| || |||||||||| | ||||||||| | || ||||||||||
Sbjct 1445 TGATTTCGCTTAAAAAGGAACCTGATGGTGAAGTTTGGGGTCACGTTGAGTGGCTTGATG 1504
Query 1484 CTGTGCTTATAGCCCCTCGGTC 1505
||||||||||||||||||||||
Sbjct 1505 CTGTGCTTATAGCCCCTCGGTC 1526
> Ahg327926 jgi|Araly1|327926|fgenesh1_pm.C_scaffold_7000153
Length=2595
Score = 110 bits (59), Expect = 4e-23
Identities = 95/112 (85%), Gaps = 3/112 (3%)
Strand=Plus/Plus
Query 1009 GGAAAACTATATGTAATGGGAGGATGTGAAGCGGATGAATCTACT-CATTGGGCTGAAGT 1067
|||||| |||| ||||||||||| |||| ||| |||||||| | | |||||||||| ||
Sbjct 2018 GGAAAA-TATACGTAATGGGAGGTTGTGCAGCAGATGAATC-AATGAATTGGGCTGAGGT 2075
Query 1068 TTTCGACCCAAAGACTCAAACTTGGGAAGCATTGCCGGATCCTGGAGTTGAG 1119
|||||||||||||||||||||||||||| | || || || ||||| | ||||
Sbjct 2076 TTTCGACCCAAAGACTCAAACTTGGGAACCTTTACCTGACCCTGGGGATGAG 2127
> Ahg925158 jgi|Araly1|925158|scaffold_200719.1
Length=1136
Score = 93.5 bits (50), Expect = 4e-18
Identities = 112/141 (79%), Gaps = 8/141 (6%)
Strand=Plus/Plus
Query 998 GCGTCCTTGATGG-AAAACTATATGTAATGGGAGGATG-TGAAGCGGATGAATCTAC-TC 1054
||||||||||||| |||| |||| |||||||| || || | || || ||||| | ||
Sbjct 527 GCGTCCTTGATGGCAAAA-TATACGTAATGGGCGG-TGCCGGGGCTGACGAATC--CGTC 582
Query 1055 -ATTGGGCTGAAGTTTTCGACCCAAAGACTCAAACTTGGGAAGCATTGCCGGATCCTGGA 1113
| |||| ||| |||||||||||||||||||||||||||||| | || | || |||||
Sbjct 583 AACTGGGGTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAATCTTTACATGACCCTGGG 642
Query 1114 GTTGAGCTCCGGTACTCTTCA 1134
| ||||| ||||| ||||||
Sbjct 643 GCTGAGCACCGGTTTTCTTCA 663
> Ahg338454 jgi|Araly1|338454|fgenesh1_pg.C_scaffold_2000553
Length=816
Score = 71.3 bits (38), Expect = 2e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 1055 ATTGGGCTGAAGTTTTCGACCCAAAGACTCAAACTTGGGAA 1095
|||||||||| ||||||||||||||||||||||||||||||
Sbjct 497 ATTGGGCTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAA 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5