BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19350.1
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890243 jgi|Araly1|890243|Al_scaffold_0007_2229 771 0.0
> Ahg890243 jgi|Araly1|890243|Al_scaffold_0007_2229
Length=543
Score = 771 bits (417), Expect = 0.0
Identities = 503/545 (92%), Gaps = 4/545 (1%)
Strand=Plus/Plus
Query 82 ATGGAGAAACCGGGTCATGAAACGGATATTGCGGGTTCAAGACGAACCCATCTGAAGAAA 141
||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 1 ATGGAGAAACCGGGTGATGAAACGGATATTCCGGGTTCTAGACGAACGAATCTGAAGAAA 60
Query 142 TCATTCAAATCCACTCTTCGA-CATCTTCTCACTGCTTGCTCCAAACAGGATTTTGTTGA 200
||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||
Sbjct 61 TCATTCAAATCCAGTCTTCGATC-TCTTCTCACTGCTTGCTCCAAACAGGATTTTCTTGA 119
Query 201 TATTTTCTCGAAATTCAGTGGGGCTGAGCAAGAACTGCTTTTTCAGTTGTATACTCGGGT 260
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||
Sbjct 120 CATTTTCTCGAAATTCAGTGGAGCTGAGCAAGAACTGCTTTTTCAGTTTTATACTCAGGT 179
Query 261 TGTTGTGAATTTGCATCAGACAATAGAGGAAGAGTTTGATGAACAATGTCACGAAACTCA 320
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 180 TGTTGTGAATTTGCATCAGACAATAGAGGATGAGTTTGATGAACAATGTCACGAAGCTCA 239
Query 321 GGTCGGACCAATTCTTGATACAGTCGAGGAGCTGGTCGAAGAACAGAGTTTGGATCCCTT 380
||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 240 GGTTGGACCAATTCTTGATACAGTTGAGCAGCTTGTCGAAGAACAGAGTTTGGATCCCTT 299
Query 381 GTTTTCTGATAAGACTGATGTAATGGCAATAGCATATGATCTTACAACATCTAAGAAGAA 440
||||| |||||||| ||||| |||||||||||| || ||||||||||| | ||||||||
Sbjct 300 ATTTTCAGATAAGACGGATGTTATGGCAATAGCAAATAATCTTACAACAGCGAAGAAGAA 359
Query 441 CGAGATACAAAAGTTAACAGTTTTGCTCCAAAGGGCTGAAGAACAGAATCGCCAGAAGGA 500
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGAGATACAAAGGTTAACAGGTTTGCTCCAAAGGGCTGAAGAACAGAATCGCCAGAAGGA 419
Query 501 AGCCCGGATCAGCATGCTCAAAAAACAAACACAAGATCTCTCAGGCACAGCGGACAGAAT 560
|||||| |||||| ||||||||||||||||||||||| ||||||||||| | |||||| |
Sbjct 420 AGCCCGAATCAGCCTGCTCAAAAAACAAACACAAGATTTCTCAGGCACAACTGACAGAGT 479
Query 561 CGAAAAGCTGAATGC-CGGGGTCTCCGGCTACTTTGAAGGAAAAGACAAGCTACCTCCAA 619
||||||||| || || ||| |||| ||||||||||||||||| ||||||||||||||||
Sbjct 480 CGAAAAGCTAAAAGCTCGGT-TCTCGGGCTACTTTGAAGGAAAGGACAAGCTACCTCCAA 538
Query 620 TATAG 624
|||||
Sbjct 539 TATAG 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30117104430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5