BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19350.1 Length=815 Score E Sequences producing significant alignments: (Bits) Value Ahg890243 jgi|Araly1|890243|Al_scaffold_0007_2229 771 0.0 > Ahg890243 jgi|Araly1|890243|Al_scaffold_0007_2229 Length=543 Score = 771 bits (417), Expect = 0.0 Identities = 503/545 (92%), Gaps = 4/545 (1%) Strand=Plus/Plus Query 82 ATGGAGAAACCGGGTCATGAAACGGATATTGCGGGTTCAAGACGAACCCATCTGAAGAAA 141 ||||||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||| Sbjct 1 ATGGAGAAACCGGGTGATGAAACGGATATTCCGGGTTCTAGACGAACGAATCTGAAGAAA 60 Query 142 TCATTCAAATCCACTCTTCGA-CATCTTCTCACTGCTTGCTCCAAACAGGATTTTGTTGA 200 ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| |||| Sbjct 61 TCATTCAAATCCAGTCTTCGATC-TCTTCTCACTGCTTGCTCCAAACAGGATTTTCTTGA 119 Query 201 TATTTTCTCGAAATTCAGTGGGGCTGAGCAAGAACTGCTTTTTCAGTTGTATACTCGGGT 260 |||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| Sbjct 120 CATTTTCTCGAAATTCAGTGGAGCTGAGCAAGAACTGCTTTTTCAGTTTTATACTCAGGT 179 Query 261 TGTTGTGAATTTGCATCAGACAATAGAGGAAGAGTTTGATGAACAATGTCACGAAACTCA 320 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 180 TGTTGTGAATTTGCATCAGACAATAGAGGATGAGTTTGATGAACAATGTCACGAAGCTCA 239 Query 321 GGTCGGACCAATTCTTGATACAGTCGAGGAGCTGGTCGAAGAACAGAGTTTGGATCCCTT 380 ||| |||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| Sbjct 240 GGTTGGACCAATTCTTGATACAGTTGAGCAGCTTGTCGAAGAACAGAGTTTGGATCCCTT 299 Query 381 GTTTTCTGATAAGACTGATGTAATGGCAATAGCATATGATCTTACAACATCTAAGAAGAA 440 ||||| |||||||| ||||| |||||||||||| || ||||||||||| | |||||||| Sbjct 300 ATTTTCAGATAAGACGGATGTTATGGCAATAGCAAATAATCTTACAACAGCGAAGAAGAA 359 Query 441 CGAGATACAAAAGTTAACAGTTTTGCTCCAAAGGGCTGAAGAACAGAATCGCCAGAAGGA 500 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 360 CGAGATACAAAGGTTAACAGGTTTGCTCCAAAGGGCTGAAGAACAGAATCGCCAGAAGGA 419 Query 501 AGCCCGGATCAGCATGCTCAAAAAACAAACACAAGATCTCTCAGGCACAGCGGACAGAAT 560 |||||| |||||| ||||||||||||||||||||||| ||||||||||| | |||||| | Sbjct 420 AGCCCGAATCAGCCTGCTCAAAAAACAAACACAAGATTTCTCAGGCACAACTGACAGAGT 479 Query 561 CGAAAAGCTGAATGC-CGGGGTCTCCGGCTACTTTGAAGGAAAAGACAAGCTACCTCCAA 619 ||||||||| || || ||| |||| ||||||||||||||||| |||||||||||||||| Sbjct 480 CGAAAAGCTAAAAGCTCGGT-TCTCGGGCTACTTTGAAGGAAAGGACAAGCTACCTCCAA 538 Query 620 TATAG 624 ||||| Sbjct 539 TATAG 543 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30117104430 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5