BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19360.1 Length=807 Score E Sequences producing significant alignments: (Bits) Value Ahg329610 jgi|Araly1|329610|fgenesh1_pm.C_scaffold_7001837 678 0.0 > Ahg329610 jgi|Araly1|329610|fgenesh1_pm.C_scaffold_7001837 Length=879 Score = 678 bits (367), Expect = 0.0 Identities = 540/620 (87%), Gaps = 25/620 (4%) Strand=Plus/Plus Query 1 ATGAAAACTGTGA-CT-TC-TCAGCATCCTTCTTCATTGTCACCACCATCTTTTCTTCCT 57 ||| ||||||| | | || |||| ||| |||| ||| ||||||| | | | | |||| Sbjct 1 ATGGAAACTGTAAGTTCTCATCAGTATCTTTCTCCATGGTCACCAGC-T-TCAAC-TCCT 57 Query 58 CCACAAATTCCCGTCGAAGCGTACATAGGAAGTTTCGTCACTCTGATTGCTAACTTCGAT 117 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| Sbjct 58 CCACAAATTCCCGTCGAAGCGTACATAGGAAGTTTCGTCACTATGATTTCTAACACCGAT 117 Query 118 ATACGTTACGAAGGCAT-ACTCTGTTTTCTCAATCTCCAAGAGTCGACTCTAGGTCTTCA 176 |||||||||||||||| | | |||||||||||| | ||||| ||||||||||||||||| Sbjct 118 CTACGTTACGAAGGCATTA-TATGTTTTCTCAATATTCAAGATTCGACTCTAGGTCTTCA 176 Query 177 AAACGTGGTATGTTATGGAACAGAAGGAAGGAAC-CAAAACGGAGTTCAAATTCCTCCGG 235 ||||||| |||||||||| ||||||||||||||| | || |||| ||||| |||||||| Sbjct 177 AAACGTGATATGTTATGGTACAGAAGGAAGGAACACTAA-CGGATTTCAAGTTCCTCCGT 235 Query 236 ATACTAAAATTCA-GAATTACATTCTTTTCAACGGAAATAACATTAAGGAAATAATAGTT 294 ||| |||| || | || |||||||||||||||||||||| || ||||||| ||||||||| Sbjct 236 ATAATAAAGTTTACGA-TTACATTCTTTTCAACGGAAATGACTTTAAGGAGATAATAGTT 294 Query 295 CAGCCTCCTACTTG-GG-----GTTTAGCAAGAGGATCTACATGTAGTAAATCTTGTCTT 348 ||||||||||||| || ||||||||| ||||||||||||||||||| |||||||| Sbjct 295 AAGCCTCCTACTTGTGGTTATTGTTTAGCAATAGGATCTACATGTAGTAAAGCTTGTCTT 354 Query 349 GCCCCAAACCCACCGCTTCCTATAATTGTCTCACCAAACAATCGATCCGACGATAAGATA 408 ||| |||| ||||| || ||||||||||||||||||||||||||||||| | ||||||| Sbjct 355 GCCACAAAACCACCACTCCCTATAATTGTCTCACCAAACAATCGATCCGGTGCTAAGATA 414 Query 409 CTCCAACAATTTCCATTGATCTCGAATGAAAATCTCATTCAACCG-CAAGCTA-AGACAG 466 ||||||||| ||||||||||||| |||||||||||||| || || ||||||| | |||| Sbjct 415 CTCCAACAACTTCCATTGATCTCCAATGAAAATCTCAT-CATCCCTCAAGCTACA-ACAG 472 Query 467 AGTCGAATGCTTTCTCAGTTAATGGATCAGTCAATGATAGATTTCCCATTGCTTCTCAAC 526 |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 473 AGTCTAATGCTTTCTCAGTTAATGGATCAGTCAATGATAGATTACACATTGCTTCTCAAC 532 Query 527 CACAGTTTCCT--T-CATACTTCTATGACCCTTATGTTTACCAGTCTATGCCTTATGCTG 583 || || |||| | |||||||||||||||||||||||||||||||||||||||||| || Sbjct 533 AACGGTATCCTGGTTCATACTTCTATGACCCTTATGTTTACCAGTCTATGCCTTATGATG 592 Query 584 AACTTAGTCAAGCTCCTATA 603 ||||| ||||||||||||| Sbjct 593 GACTTAATCAAGCTCCTATA 612 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29812121094 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5