BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19360.1
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329610 jgi|Araly1|329610|fgenesh1_pm.C_scaffold_7001837 678 0.0
> Ahg329610 jgi|Araly1|329610|fgenesh1_pm.C_scaffold_7001837
Length=879
Score = 678 bits (367), Expect = 0.0
Identities = 540/620 (87%), Gaps = 25/620 (4%)
Strand=Plus/Plus
Query 1 ATGAAAACTGTGA-CT-TC-TCAGCATCCTTCTTCATTGTCACCACCATCTTTTCTTCCT 57
||| ||||||| | | || |||| ||| |||| ||| ||||||| | | | | ||||
Sbjct 1 ATGGAAACTGTAAGTTCTCATCAGTATCTTTCTCCATGGTCACCAGC-T-TCAAC-TCCT 57
Query 58 CCACAAATTCCCGTCGAAGCGTACATAGGAAGTTTCGTCACTCTGATTGCTAACTTCGAT 117
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 58 CCACAAATTCCCGTCGAAGCGTACATAGGAAGTTTCGTCACTATGATTTCTAACACCGAT 117
Query 118 ATACGTTACGAAGGCAT-ACTCTGTTTTCTCAATCTCCAAGAGTCGACTCTAGGTCTTCA 176
|||||||||||||||| | | |||||||||||| | ||||| |||||||||||||||||
Sbjct 118 CTACGTTACGAAGGCATTA-TATGTTTTCTCAATATTCAAGATTCGACTCTAGGTCTTCA 176
Query 177 AAACGTGGTATGTTATGGAACAGAAGGAAGGAAC-CAAAACGGAGTTCAAATTCCTCCGG 235
||||||| |||||||||| ||||||||||||||| | || |||| ||||| ||||||||
Sbjct 177 AAACGTGATATGTTATGGTACAGAAGGAAGGAACACTAA-CGGATTTCAAGTTCCTCCGT 235
Query 236 ATACTAAAATTCA-GAATTACATTCTTTTCAACGGAAATAACATTAAGGAAATAATAGTT 294
||| |||| || | || |||||||||||||||||||||| || ||||||| |||||||||
Sbjct 236 ATAATAAAGTTTACGA-TTACATTCTTTTCAACGGAAATGACTTTAAGGAGATAATAGTT 294
Query 295 CAGCCTCCTACTTG-GG-----GTTTAGCAAGAGGATCTACATGTAGTAAATCTTGTCTT 348
||||||||||||| || ||||||||| ||||||||||||||||||| ||||||||
Sbjct 295 AAGCCTCCTACTTGTGGTTATTGTTTAGCAATAGGATCTACATGTAGTAAAGCTTGTCTT 354
Query 349 GCCCCAAACCCACCGCTTCCTATAATTGTCTCACCAAACAATCGATCCGACGATAAGATA 408
||| |||| ||||| || ||||||||||||||||||||||||||||||| | |||||||
Sbjct 355 GCCACAAAACCACCACTCCCTATAATTGTCTCACCAAACAATCGATCCGGTGCTAAGATA 414
Query 409 CTCCAACAATTTCCATTGATCTCGAATGAAAATCTCATTCAACCG-CAAGCTA-AGACAG 466
||||||||| ||||||||||||| |||||||||||||| || || ||||||| | ||||
Sbjct 415 CTCCAACAACTTCCATTGATCTCCAATGAAAATCTCAT-CATCCCTCAAGCTACA-ACAG 472
Query 467 AGTCGAATGCTTTCTCAGTTAATGGATCAGTCAATGATAGATTTCCCATTGCTTCTCAAC 526
|||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 473 AGTCTAATGCTTTCTCAGTTAATGGATCAGTCAATGATAGATTACACATTGCTTCTCAAC 532
Query 527 CACAGTTTCCT--T-CATACTTCTATGACCCTTATGTTTACCAGTCTATGCCTTATGCTG 583
|| || |||| | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 533 AACGGTATCCTGGTTCATACTTCTATGACCCTTATGTTTACCAGTCTATGCCTTATGATG 592
Query 584 AACTTAGTCAAGCTCCTATA 603
||||| |||||||||||||
Sbjct 593 GACTTAATCAAGCTCCTATA 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29812121094
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5