BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19380.1
Length=2367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946241 jgi|Araly1|946241|scaffold_702470.1 3446 0.0
> Ahg946241 jgi|Araly1|946241|scaffold_702470.1
Length=2219
Score = 3446 bits (1866), Expect = 0.0
Identities = 2107/2225 (95%), Gaps = 9/2225 (0%)
Strand=Plus/Plus
Query 105 ACTCACTGACGCCACGTGAGATGGAATCTCTTGTTGCGATCTGCGATACCTTCATATCCT 164
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1 ACTCACTGACACCACGTGAGATGGAATCTCTAGTTGCGATCTGCGATACCTTCATTTCCT 60
Query 165 CCATCGACGACTCTGGAGTAGGACACGTGGATGATTGCGTCGCTGGATATTTCTCCGCCT 224
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 CCATCGACGGCTCTGGAGTAGGACACGTGGATGATTGCGTCGCTGGATATTTTTCCGCCT 120
Query 225 CCGCTTCTCAGACCGGAACTCCCGACCGCGTGGCGAGGTTAATGAGTGAGAGACTTCACC 284
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 121 CCGCTTCTCAGACCGGAACTCCTGACCGCGTGGCGAGGTTGATGAGTGAGAGACTTCACC 180
Query 285 ACCCAAAGAAGTGGATACTAAGAGCTGGATTGTGGTTACTCTCTACTTGGATCGGAAGTC 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 ACCCAAAGAAGTGGATACTAAGAGCTGGATTGTGGTTACTCTCTACTTGGATCGGAACTC 240
Query 345 TAGTCTTGTGTGGTTGGAGAAGTTTCACCGGCGAGTTTCCTTACTTCCGGAGATTCTGCC 404
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TAATCTTGTGTGGTCGGAGAAGTTTCACCGGCGAGTTTCCTTACTTCCGGAGATTCTGCC 300
Query 405 GGCTTCCGGAGAAACGGAGAGAAGAGATATTGCTGAATTGGTCTTCAAGCTATTTCTCAC 464
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGCTTCCGGAGAAACAGAGAGAAGAGATATTGCTGAATTGGTCTTCAAGCTATTTCTCAC 360
Query 465 TTCTTAGAATGTTATTTAGGACCATCAAACTTATAAGTGCCCTTGTCTTCTTCACTCAGG 524
| ||||||||||| |||||| ||||||||||||| | |||| ||||||||||||||||||
Sbjct 361 TCCTTAGAATGTTCTTTAGGTCCATCAAACTTATCACTGCCTTTGTCTTCTTCACTCAGG 420
Query 525 TTGATGAAAAAGGAAGGAACTTGGCGTGGAAAGCAATAGGTTACAATGGACCCAGCCCTG 584
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 421 TTGATGAAAAAGGAAGGAACTTGGCGTGGAAAGCAATAAGTTACAATGGACCCAGCTCTG 480
Query 585 ATCATAGTGATCATGAAGTAGAACTAAACGAGGAGAAGAAGAAGAAGAAACCTGAGGAGA 644
||||||||||||||||||||||||| || | ||||||| | ||||||||| ||||||||
Sbjct 481 ATCATAGTGATCATGAAGTAGAACT-AA--ATGAGAAGATGCAGAAGAAACGTGAGGAGA 537
Query 645 TCTTTGGACCACTTTACAATGGCATCGTTGATCTAAAAAGCCCTAGAGAAGCCGTGGAAA 704
|||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||
Sbjct 538 TCTTTGGACCACTTTACAATGGCATCATCGATCTACAAAGCCCTAGAGAAGCCGTGGCAA 597
Query 705 AGAAGCTAGCCGGTCGTGGGTTCGCAGTTTCAAATCAAAAGAGGAATACAAACGGATCAT 764
||||| || |||||| ||| ||| ||||||||| |||||||||||| |||||||||||||
Sbjct 598 AGAAGTTAACCGGTCATGGATTCACAGTTTCAACTCAAAAGAGGAACACAAACGGATCAT 657
Query 765 CTATCTCTGACCCGGTGATGAAAATCCAGTGTGATGCTGTGGTGGTTGGGTCTGGATCCG 824
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 658 CTATCTCTGACCCGGTGATGACAATCCGGTGTGATGCTGTGGTGGTTGGGTCTGGATCCG 717
Query 825 GTGGAGGAGTGGCGGCAGGAGTGTTAGCCAAGGCTGGTTACAAAGTGTTGGTGATTGAGT 884
|||||||||| | ||| ||||| ||||||||||| ||||| ||||| |||||| | ||||
Sbjct 718 GTGGAGGAGTAGTGGCTGGAGTTTTAGCCAAGGCGGGTTATAAAGTATTGGTGGTGGAGT 777
Query 885 CAGGGAATTACTATGCAAGAAGCAAACTTTCTTTACTTGAAGGGCAAGCTATGGATGACA 944
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 778 CAGGGAATTACTATGCAAGAAGCAAACTTTCTTTACTTGAAGGGCAAGCAATGGATGATA 837
Query 945 TGTATTTATCCGGTGGGTTATTAGCGACGTCCGATACGAACGTAGTGATTCTTGCGGGAT 1004
|||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 838 TGTACTTATCCGGTGGGTTATTAGCGACGTCTGACACGAACGTAGTGATTCTTGCGGGGT 897
Query 1005 CCACAGTCGGAGGTGGTTCTACAATCAATTGGTCCGCCTCGATCAAGACACCAGAACATG 1064
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 898 CCACGGTCGGAGGTGGTTCGACAATCAATTGGTCCGCCTCGATCAAGACACCGGAACATG 957
Query 1065 TGATGAAGGAATGGGCAGAAAAGTCAAAACTCGAAATGTTCGGAAGTGATTTGTATCGAG 1124
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 958 TGATGAAGGAATGGGCAGAAAAATCAAAACTCGAAATGTTCGGAAGTAATTTGTATCGAG 1017
Query 1125 AGGCAATGGATGTTGTCTGTAAGAGGATGGGTGTTCAATGCGGATTTGTAGAAGAAGGGT 1184
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1018 AGGCAATGGATGTTGTCTGTGAGAGAATGGGTGTTCAATGCGGATTTGTAGAAGAAGGGT 1077
Query 1185 TTAATAATGAGGTATTGAGAAAAGGTTGTGAAAAGTTAGGGTTACCAGTGAAGAATATTC 1244
||||||||||| |||||||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct 1078 TTAATAATGAGATATTGAGAAAGGGTTGTGAAGAGTTAGGGTTACCAGTAAAGAATATTC 1137
Query 1245 CGAGGAATGCTCCATCCGATCATTACTGTGGGTTTTGTTGCTTGGGTTGCAAGAAAGGTC 1304
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1138 CGAGGAATGCTCCATCCGATCATTACTGTGGGTTTTGCTGCTTGGGATGCAAGAAAGGTC 1197
Query 1305 AAAAGCAGGGGACTTCAGAGACTTGGCTTGTAGATTTGGTGGAATCTGATAATGGTTTAA 1364
||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||||||
Sbjct 1198 AAAAGCAAGGGACTTCAGAGACATGGCTTGTAGATTTGGTGGAATCTGGTAACGGTTTAA 1257
Query 1365 TCCTTCCAGGTTGTCAAGCGACGGAAGTCATGTACGACTGT-GAACAGGGGAAGAAGAAG 1423
|||||||||||||| |||||| ||||||| ||||||||||| ||| |||||||||||||
Sbjct 1258 TCCTTCCAGGTTGTGAAGCGATGGAAGTCTTGTACGACTGTGGAA-GGGGGAAGAAGAAG 1316
Query 1424 AAGGCAACTGGAGTTGCGTTTGCGTTTGGGGAAGAGATTTATGTGGTGGAGTCTAGAGTG 1483
||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||| || |
Sbjct 1317 AAGGCGACTGGAGTTGCGTTTGCATATGGGGAAGAGATTTATGTGGTAGAGTCTAAAGCG 1376
Query 1484 ACAATAGTGGCTTGCGGTGCGCTTAGAACGCCGCATCTGTTGAAACGTAGCGGTTTGAAG 1543
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1377 ACGGTAGTGGCTTGCGGTGCGCTTAGAACGCCGCATCTGTTGAAACGGAGCGGTTTGAAG 1436
Query 1544 AATAGTAACATTGGGAGAAACCTTTGTCTACATCCGGTTGTTATGGCTTGGGGATGGTTT 1603
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1437 AATGGTAACATTGGGAGAAACCTTTGTTTACATCCGGTTGTTATGGCTTGGGGATGGTTT 1496
Query 1604 CCAGAGGAAGATAAGTGGCCGGAAAAGAAGAAAAAGAGCTACGAGGGGGGAATAATGACT 1663
||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1497 CCAGATGAAGATAAATGGCCGGAAAAGAAGAAAAAGAGCTACGAGGGAGGAATAATGACC 1556
Query 1664 GCGATGTCTAGCGTTGTAATTGAAGAAACGCATAGTTCTTATGGTGAAATGGTTATCCAG 1723
||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 1557 GCGATGTCTAGCGTTGTAAATGCAGAGACGCATAGTTCTTATGGTGAAATGGTTATCCAG 1616
Query 1724 ACACCTGCTCTACATCCAGGAATGTTCTCAGGGATCATTCCCTGGACATCAAGCAAGGAT 1783
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1617 ACACCTGCTCTACATCCAGGAATGTTCTCAGGGATCATTCCTTGGACATCAAGCAAGGAT 1676
Query 1784 TTCAAAACCCGAATGCTCAAATTTTCAAGAACCGCACACATTTTTGCGCTTCTGAGAGAT 1843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TTCAAAACCCGAATGCTCAAATTTTCAAGAACCGCACACATTTTTGCGCTTCTGAGAGAT 1736
Query 1844 AAAGGAACCGGAACAATAGATTCCAAGACCTACATTGACTACAACTTAAACGATGAAGAC 1903
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1737 AAAGGAACCGGAACAATAAATTCCAAGAGCTACATTGACTACAACTTAAACGATGAAGAC 1796
Query 1904 GAAGAGAGTCTAAAGAACGGTCTTGAAAGAGTCTTGAAGATTCTGGCCGCAGCCGGAGCC 1963
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1797 GAAGAGAGTCTAAAGAGTGGTCTTGATAGAGTCTTGAAGATTCTGGCCGCAGCCGGAGCT 1856
Query 1964 GAGGAGATTGGGACGCATCATTCAGAAGGTAGGAGTCTGAATGTTAGAACAGCGAGTTCG 2023
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||
Sbjct 1857 GAGGAGATTGGGACGCATCATTCAGAAGGTAAGAGTTTGAATGTTAGAACAGCGAGTACG 1916
Query 2024 TTAGAGATTGAGCGGTTTGTGAGAGAAGAGAGTTCAAAGCCGTTGAAGGATTTGTCAGGT 2083
||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1917 TTAGAGATTGAACGGTTTGTGAGAGAAGAAAGTTCGAAGCCGTTGAAGGATTTGTCAGGT 1976
Query 2084 CAGATATGTTCAGCTCACCAAATGGGAAGTTGTAGGATGGGAATTAGGCCGGAGGAATCC 2143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 CAGATATGTTCAGCTCACCAAATGGGAAGTTGTAGGATGGGAATTAGGCCGGAGGAATCC 2036
Query 2144 GCGGTGAGGCCAACAGGAGAGACTTGGGAGGTCGAAAGGTTATTTGTGGCGGACACAAGT 2203
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2037 GCGGTGAGGCCAACAGGAGAGACTTGGGAGGTCGAAGGGTTATTTGTGGCGGACACAAGT 2096
Query 2204 GTTTTTCCGACCGCTTTAGGGGTTAATCCGATGGTCACCGTTCAGTCTATTGCTTATTGT 2263
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 GTTTTTCCGACGGCTTTAGGGGTTAATCCGATGGTCACCGTTCAGTCTATTGCTTATTGT 2156
Query 2264 ATTGGACTTAATGTTGTTGATGTTCTTAAGAAGAAGAAGTGAGGGTTC-ATCAGTT-TGA 2321
||||||||||||||||||||||||||||||| |||||| ||||| | | ||| ||| | |
Sbjct 2157 ATTGGACTTAATGTTGTTGATGTTCTTAAGAGGAAGAAATGAGG-TACCATCTGTTCT-A 2214
Query 2322 AATAG 2326
|||||
Sbjct 2215 AATAG 2219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89169263545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5