BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G19380.1 Length=2367 Score E Sequences producing significant alignments: (Bits) Value Ahg946241 jgi|Araly1|946241|scaffold_702470.1 3446 0.0 > Ahg946241 jgi|Araly1|946241|scaffold_702470.1 Length=2219 Score = 3446 bits (1866), Expect = 0.0 Identities = 2107/2225 (95%), Gaps = 9/2225 (0%) Strand=Plus/Plus Query 105 ACTCACTGACGCCACGTGAGATGGAATCTCTTGTTGCGATCTGCGATACCTTCATATCCT 164 |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1 ACTCACTGACACCACGTGAGATGGAATCTCTAGTTGCGATCTGCGATACCTTCATTTCCT 60 Query 165 CCATCGACGACTCTGGAGTAGGACACGTGGATGATTGCGTCGCTGGATATTTCTCCGCCT 224 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 61 CCATCGACGGCTCTGGAGTAGGACACGTGGATGATTGCGTCGCTGGATATTTTTCCGCCT 120 Query 225 CCGCTTCTCAGACCGGAACTCCCGACCGCGTGGCGAGGTTAATGAGTGAGAGACTTCACC 284 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 121 CCGCTTCTCAGACCGGAACTCCTGACCGCGTGGCGAGGTTGATGAGTGAGAGACTTCACC 180 Query 285 ACCCAAAGAAGTGGATACTAAGAGCTGGATTGTGGTTACTCTCTACTTGGATCGGAAGTC 344 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 181 ACCCAAAGAAGTGGATACTAAGAGCTGGATTGTGGTTACTCTCTACTTGGATCGGAACTC 240 Query 345 TAGTCTTGTGTGGTTGGAGAAGTTTCACCGGCGAGTTTCCTTACTTCCGGAGATTCTGCC 404 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TAATCTTGTGTGGTCGGAGAAGTTTCACCGGCGAGTTTCCTTACTTCCGGAGATTCTGCC 300 Query 405 GGCTTCCGGAGAAACGGAGAGAAGAGATATTGCTGAATTGGTCTTCAAGCTATTTCTCAC 464 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GGCTTCCGGAGAAACAGAGAGAAGAGATATTGCTGAATTGGTCTTCAAGCTATTTCTCAC 360 Query 465 TTCTTAGAATGTTATTTAGGACCATCAAACTTATAAGTGCCCTTGTCTTCTTCACTCAGG 524 | ||||||||||| |||||| ||||||||||||| | |||| |||||||||||||||||| Sbjct 361 TCCTTAGAATGTTCTTTAGGTCCATCAAACTTATCACTGCCTTTGTCTTCTTCACTCAGG 420 Query 525 TTGATGAAAAAGGAAGGAACTTGGCGTGGAAAGCAATAGGTTACAATGGACCCAGCCCTG 584 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 421 TTGATGAAAAAGGAAGGAACTTGGCGTGGAAAGCAATAAGTTACAATGGACCCAGCTCTG 480 Query 585 ATCATAGTGATCATGAAGTAGAACTAAACGAGGAGAAGAAGAAGAAGAAACCTGAGGAGA 644 ||||||||||||||||||||||||| || | ||||||| | ||||||||| |||||||| Sbjct 481 ATCATAGTGATCATGAAGTAGAACT-AA--ATGAGAAGATGCAGAAGAAACGTGAGGAGA 537 Query 645 TCTTTGGACCACTTTACAATGGCATCGTTGATCTAAAAAGCCCTAGAGAAGCCGTGGAAA 704 |||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| || Sbjct 538 TCTTTGGACCACTTTACAATGGCATCATCGATCTACAAAGCCCTAGAGAAGCCGTGGCAA 597 Query 705 AGAAGCTAGCCGGTCGTGGGTTCGCAGTTTCAAATCAAAAGAGGAATACAAACGGATCAT 764 ||||| || |||||| ||| ||| ||||||||| |||||||||||| ||||||||||||| Sbjct 598 AGAAGTTAACCGGTCATGGATTCACAGTTTCAACTCAAAAGAGGAACACAAACGGATCAT 657 Query 765 CTATCTCTGACCCGGTGATGAAAATCCAGTGTGATGCTGTGGTGGTTGGGTCTGGATCCG 824 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 658 CTATCTCTGACCCGGTGATGACAATCCGGTGTGATGCTGTGGTGGTTGGGTCTGGATCCG 717 Query 825 GTGGAGGAGTGGCGGCAGGAGTGTTAGCCAAGGCTGGTTACAAAGTGTTGGTGATTGAGT 884 |||||||||| | ||| ||||| ||||||||||| ||||| ||||| |||||| | |||| Sbjct 718 GTGGAGGAGTAGTGGCTGGAGTTTTAGCCAAGGCGGGTTATAAAGTATTGGTGGTGGAGT 777 Query 885 CAGGGAATTACTATGCAAGAAGCAAACTTTCTTTACTTGAAGGGCAAGCTATGGATGACA 944 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 778 CAGGGAATTACTATGCAAGAAGCAAACTTTCTTTACTTGAAGGGCAAGCAATGGATGATA 837 Query 945 TGTATTTATCCGGTGGGTTATTAGCGACGTCCGATACGAACGTAGTGATTCTTGCGGGAT 1004 |||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| | Sbjct 838 TGTACTTATCCGGTGGGTTATTAGCGACGTCTGACACGAACGTAGTGATTCTTGCGGGGT 897 Query 1005 CCACAGTCGGAGGTGGTTCTACAATCAATTGGTCCGCCTCGATCAAGACACCAGAACATG 1064 |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 898 CCACGGTCGGAGGTGGTTCGACAATCAATTGGTCCGCCTCGATCAAGACACCGGAACATG 957 Query 1065 TGATGAAGGAATGGGCAGAAAAGTCAAAACTCGAAATGTTCGGAAGTGATTTGTATCGAG 1124 |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 958 TGATGAAGGAATGGGCAGAAAAATCAAAACTCGAAATGTTCGGAAGTAATTTGTATCGAG 1017 Query 1125 AGGCAATGGATGTTGTCTGTAAGAGGATGGGTGTTCAATGCGGATTTGTAGAAGAAGGGT 1184 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 1018 AGGCAATGGATGTTGTCTGTGAGAGAATGGGTGTTCAATGCGGATTTGTAGAAGAAGGGT 1077 Query 1185 TTAATAATGAGGTATTGAGAAAAGGTTGTGAAAAGTTAGGGTTACCAGTGAAGAATATTC 1244 ||||||||||| |||||||||| ||||||||| |||||||||||||||| |||||||||| Sbjct 1078 TTAATAATGAGATATTGAGAAAGGGTTGTGAAGAGTTAGGGTTACCAGTAAAGAATATTC 1137 Query 1245 CGAGGAATGCTCCATCCGATCATTACTGTGGGTTTTGTTGCTTGGGTTGCAAGAAAGGTC 1304 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 1138 CGAGGAATGCTCCATCCGATCATTACTGTGGGTTTTGCTGCTTGGGATGCAAGAAAGGTC 1197 Query 1305 AAAAGCAGGGGACTTCAGAGACTTGGCTTGTAGATTTGGTGGAATCTGATAATGGTTTAA 1364 ||||||| |||||||||||||| ||||||||||||||||||||||||| ||| ||||||| Sbjct 1198 AAAAGCAAGGGACTTCAGAGACATGGCTTGTAGATTTGGTGGAATCTGGTAACGGTTTAA 1257 Query 1365 TCCTTCCAGGTTGTCAAGCGACGGAAGTCATGTACGACTGT-GAACAGGGGAAGAAGAAG 1423 |||||||||||||| |||||| ||||||| ||||||||||| ||| ||||||||||||| Sbjct 1258 TCCTTCCAGGTTGTGAAGCGATGGAAGTCTTGTACGACTGTGGAA-GGGGGAAGAAGAAG 1316 Query 1424 AAGGCAACTGGAGTTGCGTTTGCGTTTGGGGAAGAGATTTATGTGGTGGAGTCTAGAGTG 1483 ||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||| || | Sbjct 1317 AAGGCGACTGGAGTTGCGTTTGCATATGGGGAAGAGATTTATGTGGTAGAGTCTAAAGCG 1376 Query 1484 ACAATAGTGGCTTGCGGTGCGCTTAGAACGCCGCATCTGTTGAAACGTAGCGGTTTGAAG 1543 || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1377 ACGGTAGTGGCTTGCGGTGCGCTTAGAACGCCGCATCTGTTGAAACGGAGCGGTTTGAAG 1436 Query 1544 AATAGTAACATTGGGAGAAACCTTTGTCTACATCCGGTTGTTATGGCTTGGGGATGGTTT 1603 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1437 AATGGTAACATTGGGAGAAACCTTTGTTTACATCCGGTTGTTATGGCTTGGGGATGGTTT 1496 Query 1604 CCAGAGGAAGATAAGTGGCCGGAAAAGAAGAAAAAGAGCTACGAGGGGGGAATAATGACT 1663 ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1497 CCAGATGAAGATAAATGGCCGGAAAAGAAGAAAAAGAGCTACGAGGGAGGAATAATGACC 1556 Query 1664 GCGATGTCTAGCGTTGTAATTGAAGAAACGCATAGTTCTTATGGTGAAATGGTTATCCAG 1723 ||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| Sbjct 1557 GCGATGTCTAGCGTTGTAAATGCAGAGACGCATAGTTCTTATGGTGAAATGGTTATCCAG 1616 Query 1724 ACACCTGCTCTACATCCAGGAATGTTCTCAGGGATCATTCCCTGGACATCAAGCAAGGAT 1783 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1617 ACACCTGCTCTACATCCAGGAATGTTCTCAGGGATCATTCCTTGGACATCAAGCAAGGAT 1676 Query 1784 TTCAAAACCCGAATGCTCAAATTTTCAAGAACCGCACACATTTTTGCGCTTCTGAGAGAT 1843 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1677 TTCAAAACCCGAATGCTCAAATTTTCAAGAACCGCACACATTTTTGCGCTTCTGAGAGAT 1736 Query 1844 AAAGGAACCGGAACAATAGATTCCAAGACCTACATTGACTACAACTTAAACGATGAAGAC 1903 |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 1737 AAAGGAACCGGAACAATAAATTCCAAGAGCTACATTGACTACAACTTAAACGATGAAGAC 1796 Query 1904 GAAGAGAGTCTAAAGAACGGTCTTGAAAGAGTCTTGAAGATTCTGGCCGCAGCCGGAGCC 1963 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1797 GAAGAGAGTCTAAAGAGTGGTCTTGATAGAGTCTTGAAGATTCTGGCCGCAGCCGGAGCT 1856 Query 1964 GAGGAGATTGGGACGCATCATTCAGAAGGTAGGAGTCTGAATGTTAGAACAGCGAGTTCG 2023 ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || Sbjct 1857 GAGGAGATTGGGACGCATCATTCAGAAGGTAAGAGTTTGAATGTTAGAACAGCGAGTACG 1916 Query 2024 TTAGAGATTGAGCGGTTTGTGAGAGAAGAGAGTTCAAAGCCGTTGAAGGATTTGTCAGGT 2083 ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1917 TTAGAGATTGAACGGTTTGTGAGAGAAGAAAGTTCGAAGCCGTTGAAGGATTTGTCAGGT 1976 Query 2084 CAGATATGTTCAGCTCACCAAATGGGAAGTTGTAGGATGGGAATTAGGCCGGAGGAATCC 2143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1977 CAGATATGTTCAGCTCACCAAATGGGAAGTTGTAGGATGGGAATTAGGCCGGAGGAATCC 2036 Query 2144 GCGGTGAGGCCAACAGGAGAGACTTGGGAGGTCGAAAGGTTATTTGTGGCGGACACAAGT 2203 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2037 GCGGTGAGGCCAACAGGAGAGACTTGGGAGGTCGAAGGGTTATTTGTGGCGGACACAAGT 2096 Query 2204 GTTTTTCCGACCGCTTTAGGGGTTAATCCGATGGTCACCGTTCAGTCTATTGCTTATTGT 2263 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2097 GTTTTTCCGACGGCTTTAGGGGTTAATCCGATGGTCACCGTTCAGTCTATTGCTTATTGT 2156 Query 2264 ATTGGACTTAATGTTGTTGATGTTCTTAAGAAGAAGAAGTGAGGGTTC-ATCAGTT-TGA 2321 ||||||||||||||||||||||||||||||| |||||| ||||| | | ||| ||| | | Sbjct 2157 ATTGGACTTAATGTTGTTGATGTTCTTAAGAGGAAGAAATGAGG-TACCATCTGTTCT-A 2214 Query 2322 AATAG 2326 ||||| Sbjct 2215 AATAG 2219 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89169263545 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5