BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19390.1
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492923 jgi|Araly1|492923|fgenesh2_kg.7__2356__AT4G19390.1 1282 0.0
> Ahg492923 jgi|Araly1|492923|fgenesh2_kg.7__2356__AT4G19390.1
Length=955
Score = 1282 bits (694), Expect = 0.0
Identities = 899/990 (91%), Gaps = 46/990 (5%)
Strand=Plus/Plus
Query 32 CCACACCTGGTTGACTCAACCACGATTCGTCCCTAAGCAGCCATGACGACGCCGTGCCGG 91
||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct 1 CCACACCTGGTTGACTCAACCACGA--C-T--CAAAGCAGCCATGACGACGCCGTGCCGG 55
Query 92 ACCATTAACGCTAATGCTATCGCCGCACCGTCGCCTTCGGGATTGATCTTTAACGGGTTT 151
||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||
Sbjct 56 ACCATTAACGCTAATGCTATCGCCGCACCATCGTCTTCGGGATTGATCTTCAACGGGTTT 115
Query 152 CGTGATTTCGTCCCGATTGAAAAGAGGCTTGTTATATCAAGCTTTCGTGGCTTGAAACTA 211
|| ||||| || || || || |||||||||||||||||||||| ||| |||||| || ||
Sbjct 116 CGAGATTTTGTTCCAATCGATAAGAGGCTTGTTATATCAAGCTCTCGCGGCTTGCAATTA 175
Query 212 CCGTCGAGGACGACGAAGACTATTACGAGCTCTGAC-TGGAGTTGGAGTTATAGGTCTCC 270
|||| || ||| |||||| | |||||||||||| | ||| |||||||||||||||||||
Sbjct 176 CCGTTGATGACAACGAAGTCGGTTACGAGCTCTG-CTTGGCGTTGGAGTTATAGGTCTCC 234
Query 271 GGGAAGATTGgcgtctgcgtctacgtctacgtctgcgtctacgtctacgtctgcgGCTGT 330
||||||| | | |||| | ||||||||||||||||| | | ||||||
Sbjct 235 GGGAAGA------T-T--GTCT--G----CGTCTGCGTCTACGTCT--G--T--GGCTGT 273
Query 331 AACATCGAATTCTACGAATAGATTTGAAGCTTTAGAAGAGGGGATTGAGAAGGTCATTTA 390
||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 274 AACATCGAATTCTGCGAATAGATTTGAAGTTTTAGAAGAGGGTATTGAGAAGGTCATTTA 333
Query 391 TAGTTGTCGATTTATGACGTTTCTTGGAACATTAGGATCTTTGCTCGGATCGGTTCTCTG 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 TAGTTGTCGATTTATGACGTTTCTTGGAACATTAGGATCTTTGCTCGGATCGGTTCTCTG 393
Query 451 TTTCATCAAGGGATGTATGTATGTTGTAGACTCGTTTTTGCAGTATTCGGTGAATCGTGG 510
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 TTTTATCAAGGGATGTATGTATGTTGTAGACTCGTTTTTGCAGTATTCGGTGAATCGTGG 453
Query 511 GAAAGTGATATTCCTTTTGGTTGAGGCCATAGATATATATCTCCTAGGAACTGTGATGTT 570
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GAAGGTGATATTCCTTTTGGTTGAGGCCATAGATATATATCTCCTAGGAACTGTGATGTT 513
Query 571 AGTCTTTGGATTGGGACTTTACGAGTTGTTCATCAGCAATCTCGATACTTCAGAGTCGCG 630
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 514 GGTCTTTGGACTGGGACTTTACGAGTTGTTCATCAGCAATCTCGACACTTCAGAGTCGCG 573
Query 631 CACACACGATATTGTTTCCAATAGGTCGAGCCTCTTTGGCATGTTCACCTTAAAGGAGCG 690
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 574 CTCACACGATATTGTTTCCAATAGGTCGAGCCTCTTTGGCATGTTCACTTTAAAGGAGCG 633
Query 691 ACCTCAATGGTTAGAGGTGAAATCGGTAAGCGAGCTGAAAACAAAGTTGGGACATGTAAT 750
|||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||
Sbjct 634 ACCTCAATGGTTAGAGGTGAAATCAGTAAGCCAGCTGAAAACGAAGTTGGGACATGTAAT 693
Query 751 AGTGATGCTACTATTGATTGGTTTGTTTGACAAGAGCAAGAGAGTAGTCATAACTTCTGT 810
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 694 AGTGATGCTACTATTGATTGGTTTGTTTGACAAGAGCAAGAAAATAGTCATAACTTCTGT 753
Query 811 CACGGATTTGCTATGTATCTCTGTTTCTATCtttttttCTTCTGCTTGTCTCTTCTTGCT 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 CACGGATTTGCTATGTATCTCTGTTTCTATCTTTTTTTCTTCTGCTTGTCTCTTCTTGCT 813
Query 871 CTCTAGGCTCAATGGTTCACACTGAGGAGTTAATGGTGTTGTCCCAAAACAAAAGAAACT 930
||||||||||||||| ||||| |||| |||||||| |||||||||||||||| |||||
Sbjct 814 CTCTAGGCTCAATGGGTCACATTGAG---TTAATGGTTTTGTCCCAAAACAAAATAAACT 870
Query 931 TTGTATGT-GT--AT----A-A-TGTTTTAGCAACGCTCCATCTT-CTCTTTTTGTTCAT 980
|||||||| || || | | ||||||||||| | | || ||| ||||||| ||||||
Sbjct 871 TTGTATGTTGTGTATGTGTATAATGTTTTAGCAAAGTTTCA-CTTTCTCTTTT-GTTCAT 928
Query 981 TATATATTGTTTCTCTCTGACTTTGATTTT 1010
|||| | |||| ||||||||||||| |||
Sbjct 929 -ATAT-T-GTTTTTCTCTGACTTTGAGTTT 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38313531585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5