BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19410.1
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492921 jgi|Araly1|492921|fgenesh2_kg.7__2354__AT4G19410.1 2172 0.0
Ahg494455 jgi|Araly1|494455|fgenesh2_kg.8__271__AT5G45280.2 989 0.0
> Ahg492921 jgi|Araly1|492921|fgenesh2_kg.7__2354__AT4G19410.1
Length=1439
Score = 2172 bits (1176), Expect = 0.0
Identities = 1362/1449 (94%), Gaps = 23/1449 (2%)
Strand=Plus/Plus
Query 1 GAAGACATCAATGACTGGCTTCCATAAACTTTTAAAGCTCTCTCTTTCAGATTCCTCTCT 60
||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAGACAACCATGGCTGGCTTCCATAAACTTTTAAAGCTCTCTCTTTCAGATTCCTCTCT 60
Query 61 ATCCATTTCATT-A-ACACC-AAAAC----C-TTTTTCTTCTCTCTAACCAAACAAG-A- 110
|||||| ||||| | ||||| ||||| | ||||||||||||||||||||||||| |
Sbjct 61 ATCCATCTCATTAACACACCAAAAACAAAACTTTTTTCTTCTCTCTAACCAAACAAGAAT 120
Query 111 --AGAGGACTCCATTTTCGCAAGAATGGGGAGGCTTAAGCAATGTTGGTCAAGTCTGCTA 168
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TTAGAGGACTCCATTTTCACAAGAATGGGGAGGCTTAAGCAATGTTGGTCAAGTTTGCTA 180
Query 169 GTATTGGCAGTGTTGGTGATCGGAACTGGAGCCGTTCCCATCACTTATCTCCAAAGCGCC 228
|| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 GTGTTGGCAGTGGTGGTGATCGGAACCGGAGCCGTTCCCATCACTTATCTACAAAGCGCC 240
Query 229 GTCGCTAAAGGAGCCGTGTGTTTGGATGGGAGTGCACCAGCTTACCATTTTGACAAAGGG 288
|| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 241 GTTGCCAAAGGAGCCGTGTGTTTGGATGGGAGTGCACCAGCTTATCATTTCGACAAAGGG 300
Query 289 TTTGGTTCGGGTGTTAACAATTGGATCGTCCACATGGAGGGAGGAGGATGGTGTACCGAC 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTGGTTCGGGTGTTAACAATTGGATCGTCCACATGGAGGGAGGAGGATGGTGTACCGAT 360
Query 349 GTTGCTTCATGTAATGAACGTAAGGGTACAATGAAGGGTTCTTCCAAATTCATGAACAAA 408
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GTCGCTTCATGTAATGAACGTAAGGGTACAATGAAGGGTTCGTCCAAATTCATGAACAAA 420
Query 409 GACTTTGGATTTTCCGGTATCTTGGGTGGCAAGCAAAGCACTAACCCAGATTTCTACAAT 468
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GACTTTGGATTTTCCGGTATCTTGGGTGGCAAGCAAAGCACTAACCCAGATTTTTACAAT 480
Query 469 TGGAACAGAATCAAAGTACGATATTGTGACGGATCATCCTTTACCGGCAATGTAGAAGCC 528
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 481 TGGAACAGAATCAAAGTACGATATTGCGATGGGTCATCCTTTACCGGCAATGTAGAAGCC 540
Query 529 GTTAATCCGGCAAACAAGCTGTTCTTCCGCGGTGCCCGAGTTTGGCGTGCGGTGGTTGAT 588
||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 GTTAATCCGGCGAATAAGCTGTTCTTCCGCGGTGCCCGAGTTTGGCGTGCGGTGATTGAT 600
Query 589 GATCTTATGGCTAAAGGAATGAAAAACGCTCAAAACGCTATACTCTCCGGTTGTTCAGCT 648
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 601 GATCTTATGGCTAAAGGAATGAAAAACGCTCAAAACGCGATACTCTCCGGTTGTTCAGCC 660
Query 649 GGAGCATTGGCTGCGATTCTTCATTGTGACACTTTCCGTGCCATACTTCCCCGAACAGCT 708
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGAGCATTGGCCGCGATTCTACATTGTGACACTTTCCGTGCCATACTTCCCCGAACAGCT 720
Query 709 AGCGTCAAATGTGTTTCTGATGCCGGTTACTTTATCCACGGTAAAGATATCACAGGAGGA 768
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGCGTCAAATGTGTTTCCGATGCCGGTTACTTTATCCACGGTAAAGATATCACAGGAGGA 780
Query 769 TCATACATTC-AATCATATTACAGCAAAGTCGTCGCACTCCACGGATCTGCAAAGAGTCT 827
||||||| || |||| || ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 781 TCATACA-TCGAATCGTACTACAGCAAAGTCGTCGCGCTCCATGGATCTGCAAAGAGTCT 839
Query 828 TCCTGTTTCTTGTACCTCAAAAATGAAACCAGAACTCTGTTTCTTCCCGCAATACGTCGT 887
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 840 TCCTGTTTCTTGCACCTCAAAAATGAAACCAGAACTCTGTTTCTTCCCCCAATATGTCGT 899
Query 888 TCCTTCCATGCGAACACCGCTCTTTGTCATCAATGCCGCTTTTGATTCTTGGCAGATCAA 947
||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||
Sbjct 900 TCCTTCCATGCGAACACCGCTCTTTGTCATCAACGCCGCCTACGATTCATGGCAGATCAA 959
Query 948 GAACGTTTTGGCTCCAACTGCTGTTGATAAGGGAAAAGAGTGGAAGAATTGTAAGCTTGA 1007
||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 960 GAACGTTTTGGCTCCCACTGCTGTTGATAAGGGAAAACAATGGAAGAATTGTAAGCTTGA 1019
Query 1008 TCTTAAGAAATGTAGTGCCGCTCAGCTCAAAACCGTCCAAGGGTTTAGAGATCAGATGAT 1067
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TCTCAAGAAATGTAGTGCCGCTCAGCTCAAAACCGTCCAAGGGTTTAGAGATCAGATGAT 1079
Query 1068 GCGAGCATTGTCACCGGTTCACAGTACACCGTCTAGAGGATTGTTCTTAGACTCGTGTCA 1127
||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1080 GCGTGCATTATCACCGGTTCACAGTACACCGTCGAGAGGGTTGTTCTTAGACTCGTGTCA 1139
Query 1128 CGCTCATTGCCAAGGAGGAAGCGCCGCCTCTTGGTCCGGTGACAAAGGTCCCCAAGTCGC 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1140 CGCTCATTGCCAAGGAGGAAGCGCCGCCTCTTGGTCCGGTGACAAAGGTCCCCAAATCGC 1199
Query 1188 CAATACGAGAATTGCGAAAGCAGTCGGAAACTGGTTTTATGGCCGGAGTGCATTTCAGAA 1247
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1200 TAATACGAGAATTGCGAAAGCAGTCGGAAACTGGTTTTATGGTCGGAGTGCATTTCAGAA 1259
Query 1248 GATAGATTGTCCGTCGCCGACTTGTAATCCTACTTGTCCTGCTATCTCTACTGAAGACTA 1307
|||||| |||||||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct 1260 GATAGACTGTCCGTCGCCGACTTGTAATCCTACGTGTCCTGCAATTTCAACTGAAGACTA 1319
Query 1308 GAATCATCTCTAAATGTTCAAttttttttAATTTGAAATTGAAAGAGCTCGCAAACATTT 1367
||||||||| ||||||||||||||| ||||| || || ||||| ||| | |||||||
Sbjct 1320 GAATCATCT--AAATGTTCAATTTTT---AATTTCAA-TTAAAAGATCTCTCGAACATTT 1373
Query 1368 TGGATTTGTTTTCCAAATCGGATCAATAATAATCACTGCAATTTGAATAAAGAGTATATC 1427
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1374 TGGATTTGTTTTCCAAATCGGATCAATAAT---CACTGCAATTTGAATAAAGAGTATCTT 1430
Query 1428 TTTACTTTG 1436
|||||||||
Sbjct 1431 TTTACTTTG 1439
> Ahg494455 jgi|Araly1|494455|fgenesh2_kg.8__271__AT5G45280.2
Length=1414
Score = 989 bits (535), Expect = 0.0
Identities = 999/1218 (82%), Gaps = 51/1218 (4%)
Strand=Plus/Plus
Query 119 CCATTTTCGCAAGAATGGGGAGGCTTAAGCAA-TGTTGGTCAAGTCTGCTAGTATTGGCA 177
|||||||| ||||||||| |||||| |||||| || ||||||||| | | || ||||
Sbjct 101 CCATTTTCTCAAGAATGGCGAGGCTAAAGCAATTG-TGGTCAAGTTTTTTGGTGCTGGCC 159
Query 178 GTGTTGGTGATCGGAACTGGAGCCGTTCCCATCACTTATCTCCAAAGCGCCGTCGCTAAA 237
||| ||||||| || | |||| || |||||||| ||||| || ||| || ||||||
Sbjct 160 GTGGTGGTGATTGGGGCCAGAGCTGTGCCCATCACATATCTTGAATCCGCGGTAGCTAAA 219
Query 238 GGAGCCGTGTGTTTGGATGGGAGTGCACCAGCTTACCATTTTGACAAAGGG-TTTGGTTC 296
||||| |||||||||||||| || |||||||| |||||||| || ||||| | ||| ||
Sbjct 220 GGAGCTGTGTGTTTGGATGGTAGCGCACCAGCATACCATTTCGA-TAAGGGATCTGGCTC 278
Query 297 GGGTGTTAACAATTGGATCGTCCACATGGAGGGAGGAGGATGGTGTACCGACGTTGCTTC 356
|| | |||||||||||||| || ||||| |||||||||||||| || || | ||| |
Sbjct 279 AGGAGCGAACAATTGGATCGTTCATATGGAAGGAGGAGGATGGTGCACTGATATAGCTAC 338
Query 357 AT--GTAATGAACGTAAGGGTACAATGAAGGGTTCTTCCAA-ATTCATGAACAAAGACTT 413
|| || | ||||||| ||||||||||||||||||| || || ||||||||||||||
Sbjct 339 ATGCGT-A-CAACGTAAAAGTACAATGAAGGGTTCTTCTAAGCTT-ATGAACAAAGACTT 395
Query 414 TGGATTT-TCCGGTATCTTGGGTGGCAAGCAAAGCACTAACCCAGA-TTTCTACAATTGG 471
||| ||| || |||||||||||||||||||||||||| || ||||| ||| |||||||||
Sbjct 396 TGG-TTTCTCTGGTATCTTGGGTGGCAAGCAAAGCACCAATCCAGACTTT-TACAATTGG 453
Query 472 AACAGAATCAAAGTACGATATTGTGACGGATCATCCTTT-ACCGGCAATGTAGAAGCCGT 530
|| ||||||||||| || ||||| || || |||| |||| || ||| || ||||||| ||
Sbjct 454 AATAGAATCAAAGTTCGGTATTGCGATGGTTCAT-CTTTCACTGGCGATATAGAAGCTGT 512
Query 531 TAATCCGGCAAACAAGCTGTTCTTCCGCGGTGCCCGAGTTTGGCGTGCGGTGGTTGATGA 590
| ||||| | |||||||||||||| |||||||| | ||||||||||||||| | |||||
Sbjct 513 TGATCCGACGAACAAGCTGTTCTTTCGCGGTGCTAGGGTTTGGCGTGCGGTGATCGATGA 572
Query 591 TCTTATGGCTAAAGGAATGAAAAACGCTCAAAACGCTATACTCTCCGGTTGTTCAGCTGG 650
|||||||||||| || |||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 573 TCTTATGGCTAAGGGGATGAGCAACGCTCAAAACGCGATACTCTCTGGTTGTTCAGCTGG 632
Query 651 AGCATTGGCTGCGATTCTTCATTGTGAC-ACTTTCC-GTGCCATACTTCCCCGAA-CAGC 707
|||||||||||||||||| ||||| ||| | || | || |||| || ||| || | ||
Sbjct 633 AGCATTGGCTGCGATTCTACATTGCGACCAGTT-CAAGT-CCATTCT-CCCTAAAACGGC 689
Query 708 TA-GCGTCAAATGTGTTTCTGATGCCGGTTACTTTATCCACGGTAAAGATATCACAGGAG 766
|| | ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 690 TAAG-GTCAAATGTGTTTCTGACGCCGGTTACTTCATCCACGGTAAAGATATCACTGGAG 748
Query 767 GATCATACATTCAATCATATTACAGC-AAAGTCGTCGC-ACTCCACGGATCTGCAAAGAG 824
|||| ||||| ||||| || ||| || |||||||| || || ||||||||||||||||||
Sbjct 749 GATCTTACATCCAATCGTACTAC-GCCAAAGTCGTAGCGAC-CCACGGATCTGCAAAGAG 806
Query 825 TCTTCCTGTTTCTTGTACCTCAAAAATGAAACCAGAACTCTGTTTCTTCCCGCAATACGT 884
||| |||| |||||| ||||||| ||||| || || | ||||||||||| ||||||||
Sbjct 807 TCTACCTGCTTCTTGCACCTCAAGTATGAAGCCCGAGTTGTGTTTCTTCCCTCAATACGT 866
Query 885 CGTTCCTTCCATGCGAACACCGCTCTTT-GTCATCAATGCCGCTTTTGATTCTTGGCAGA 943
| || || ||| ||||||||| ||| |||||||||||||| || |||||||||||||
Sbjct 867 TGCTCAGACCTTGCAAACACCGCT-TTTCGTCATCAATGCCGCCTTCGATTCTTGGCAGA 925
Query 944 TCAAGAACGTTTTGGCTCCAAC-TGCTGTTGATAAGGGAAAAGAGTGGAAGAATTGTAAG 1002
|||||||||||||||| ||||| | |||||||||| | |||| |||||||| |||||||
Sbjct 926 TCAAGAACGTTTTGGCGCCAACCT-CTGTTGATAAAAGCAAAGCGTGGAAGACTTGTAAG 984
Query 1003 CTTGATCTTAAGAAATGTA-GTGCCGCTCAGCT-CAAAACCGTCCAAGGGTTTAGAGATC 1060
|||||||||||||| |||| | ||||||||||| |||| |||| ||||||| |||||| |
Sbjct 985 CTTGATCTTAAGAAGTGTACG-GCCGCTCAGCTTCAAA-CCGTTCAAGGGTATAGAGACC 1042
Query 1061 A-GATGATG-CGAGCATTGTCACCGGTTC-A-CAGTACACCGTCTAGAGGATTGTTCTTA 1116
| | || || | || ||| ||||||||| | | | |||| | || ||||||||||||
Sbjct 1043 AAG-TGTTGGCT-GCGTTGGCACCGGTTCGATCCG-ACACAA-CGAGCGGATTGTTCTTA 1098
Query 1117 GACTCGTGTCACGCTCATTGCCAAGGAGGAAGCGCCGCCTCTTGGTCCGGTGACAAAGGT 1176
|||||||| ||||||||||||||||| |||||||| ||| |||||||||| || ||||
Sbjct 1099 GACTCGTGCCACGCTCATTGCCAAGGTGGAAGCGCTGCCACTTGGTCCGGCGATGGAGGT 1158
Query 1177 CCC-CAAGTCGCCAATACGAGAATTGCGAAAGCAGTCGGAAACTGGTT-TTATGGCCGGA 1234
|| || || || ||||||| ||| || || || || | | | ||||| || || |||
Sbjct 1159 CCTACA-GTGGCGAATACGAAAATGGCTAAGGCGGTTGCAGATTGGTTCTT-TGAAAGGA 1216
Query 1235 GTGCATTTCAGAAGATAGATTGTCCGTCGCCGACTTGTAATCCTACTTGTCCTGCTA-TC 1293
|| | |||||||| ||||||||| | |||| || ||| || |||||||| ||||| | |
Sbjct 1217 GTACGTTTCAGAACATAGATTGTTCATCGCTGAATTGCAACCCTACTTGCCCTGC-AGTA 1275
Query 1294 TCTACTGAAGACTAGAAT 1311
|||||||||||||| |||
Sbjct 1276 TCTACTGAAGACTA-AAT 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55192765005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5