BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19420.1
Length=1832
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492919 jgi|Araly1|492919|fgenesh2_kg.7__2352__AT4G19420.1 2676 0.0
> Ahg492919 jgi|Araly1|492919|fgenesh2_kg.7__2352__AT4G19420.1
Length=1669
Score = 2676 bits (1449), Expect = 0.0
Identities = 1602/1673 (96%), Gaps = 21/1673 (1%)
Strand=Plus/Plus
Query 27 tttttttttttttGGTGTCACGAAAACGAACGAATCAGTGTCGGCTCTTGGGTTCCGAAC 86
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 5 TTTTTTTTTTTTTGGTTTCACGAAAACGAACGGATCAGTGTCGGCTCTTGGGTTCCGAAC 64
Query 87 AAAAACAACATTGTACGTCGGATCC-AA-AAAACGCGCGTTATATAAACGCTTAATTTCT 144
||||| ||||||||||||||||||| || |||||||||||| || |||||||||||||||
Sbjct 65 AAAAAAAACATTGTACGTCGGATCCAAACAAAACGCGCGTTTTACAAACGCTTAATTTCT 124
Query 145 CCAGGATTCTTCTTCTGCTTCCGCCATTGCTCGAAAATCGCGTCTTCTGACAATGTGCTG 204
|| ||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 125 CCGGGA---TTCTTCTGCTTCCACCATTGTTCGAAAATCGCGTCTTCTGACAATGTGCTG 181
Query 205 AAACTGAGTCATCGTCCGAGTTAGCAAAGTGAAACTTCGAAGTTTCTCTTACACTAATCT 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AAACTGAGTCATCGTCCGAGTTAGCAAAGTGAAACTTCGAAGTTTCTCTTACACTAATCT 241
Query 265 CAGGTTTGGGATTTTGTAAG-AAACCGCGTTTACAAAATGTTCAAGTTGAAGCAATGGTT 323
|||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||
Sbjct 242 CAGGTTTGGGATTTTGTAAGAAAACCGCGTTTACAAAATGTTCAAGTTCAAGAAATGGTT 301
Query 324 GATT-TATTTGGTGTGTTCGTTAGTAATAATGAACACAGAAGGACTGTTTGTCAATATTA 382
|||| | ||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 302 GATTCT-TTTGGTGTGTTCGTTAGTAATAATGAAGACAGAAGGACTCTTTGTTAATATTA 360
Query 383 CATTTGTTCGAAACGCAGTCGCTAAAGGGGCCGTTTGTTTAGATGGAAGTCCACCAGCTT 442
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 CATTTGTTCGAAACGCAGTCGCAAAAGGGGCCGTTTGTTTAGATGGAAGTCCACCAGCTT 420
Query 443 ATCATTTGGATAGAGGTTCTGGAACTGGAATCAATAGTTGGTTGATACAGCTTGAGGGAG 502
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 ATCATTTAGATAGAGGTTCTGGAACTGGAATCAATAGCTGGTTGATACAGCTTGAGGGAG 480
Query 503 GAGGATGGTGCAATAATGTAACAAATTGCGTTAGTCGGATGCATACTCGATTAGGTTCAT 562
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 481 GAGGATGGTGCAATAATGTAACAAATTGCATTAGTCGGATGCATACTCGGTTAGGTTCAT 540
Query 563 CGAAGAAAATGGTGGAGAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATA 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGAAGAAAATGGTGGAGAACCTTGCTTTCTCAGCTATTCTTAGCAATAAGAAACAATATA 600
Query 623 ATCCTGATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGGGCATCATTCA 682
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 ATCCTGATTTTTACAATTGGAATAGAGTGAAAGTTAGATACTGTGACGGCTCATCATTCA 660
Query 683 CAGGAGATGTAG-AAGCAGTGAACCCTGCTACTAATCTTCACTTCAGAGGTGCTCGAGTT 741
|||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 CAGGAGATGT-GCAAGCAGTGAACCCCGCTACTAATCTTCACTTCAGAGGTGCTCGAGTT 719
Query 742 TGG-TTAGCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAATGCTGT 800
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGGCTT-GCCGTTATGCAAGAGCTGCTAGCTAAAGGCATGATAAACGCCGAGAATGCTGT 778
Query 801 TTTGTCTGGCTGTTCTGCTGGCGGGTTAGCTTCGCTGATGCATTGTGATAGTTTCCGTGC 860
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 779 TTTGTCTGGGTGTTCCGCTGGCGGGTTAGCTTCGCTGATGCATTGTGACAGTTTCCGTGC 838
Query 861 TCTATTACCGATGGGAACCAAAGTAAAATGTCTTTCAGATGCTGGtttttttCTCAACAC 920
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCTATTACCAATGGGTACCAAAGTAAAATGTCTTTCAGATGCTGGTTTTTTTCTCAACAC 898
Query 921 AAGAGACGTCTCAGGAGTTCAATACATTAAAACATACTTCGAAGATGTTGTTACTCTTCA 980
|||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 899 AAGAGATGTCTCAGGAGTTCAATACATTAAATCATACTTCGAAGATGTGGTTACTCTTCA 958
Query 981 TGGATCAGCAAAGAACTTGCCGAGGTCATGCACATCAAGATTAACTCCTGCAATGTGTTT 1040
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 959 TGGATCAGCAAAGAACTTGCCGAGGTCGTGCACATCAAGATTAACTCCTGCAATGTGTTT 1018
Query 1041 CTTTCCGCAATATGTGGCTCGCCAGATTAGAACTCCTCTGTTCATTCTTAATGCCGCTTA 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTTTCCGCAATATGTGGCTCGCCAGATTAGAACTCCTCTGTTCATTCTTAATGCCGCTTA 1078
Query 1101 TGACTCTTGGCAGATAAAGAACATTTTGGCTCCGCGAGCAGCTGATCCTTACGGAAAATG 1160
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1079 CGACTCTTGGCAGATAAAGAACATTTTGGCTCCGCGTGCTGCTGATCCTTACGGAAAATG 1138
Query 1161 GCAAAGTTGTCAACTAGACATCAAGAATTGCCATCCAAGTCAGATCAAAGTTATGCAAGA 1220
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1139 GCAAAGTTGCCAACTAGACATCAAGAATTGTCATCCAAGTCAGATCAAAGTTATGCAAGA 1198
Query 1221 TTTCAGGTTAGAGTTCTTGAGTGCAGTGATAGGTTTAGGGAGATCTTCATCAAGAGGGAT 1280
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TTTCAGGTTGGAGTTCTTGAGTGCAGTGATAGGTTTAGGGAGATCTTCATCAAGAGGGAT 1258
Query 1281 GTTCATAGATTCTTGCTACACTCACTGCCAAACCGAGACACAAACTTCATGGTTCTGGCA 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GTTCATAGATTCTTGCTACACTCACTGCCAAACCGAGACACAAACTTCATGGTTCTGGCA 1318
Query 1341 AGATTCTCCAATTCTAAACCGAACGACAATAGCAAAAGCTGTTGGAGATTGGGTTTATGA 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AGATTCTCCAATTCTAAACCGAACGACAATAGCAAAAGCTGTTGGAGATTGGGTTTATGA 1378
Query 1401 CAGAACATTGTTTCAGAAGATAGATTGTCCTTACCCTTGTAACCCTACTTGCCACCACAG 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CAGAACATTGTTTCAGAAGATAGATTGTCCTTACCCTTGTAACCCTACTTGCCACCACAG 1438
Query 1461 GGTTTTCACTCCTCTAGATGCTCCTCCAATTTAAGTGATTCTACCATATA-CAG-TATA- 1517
||||||||||||||||||||||||||||||||||| | |||||| ||||| || ||||
Sbjct 1439 GGTTTTCACTCCTCTAGATGCTCCTCCAATTTAAGAGGTTCTACTATATAACATATATAT 1498
Query 1518 -GATTTATTATTATTTT-GAAAAGAAAATTTGCTTATAAATGATTCATTTGTTAGATACA 1575
|||||||||||||||| ||||||||||| ||||||||||||||| ||| || |||||
Sbjct 1499 AGATTTATTATTATTTTTGAAAAGAAAATATGCTTATAAATGATTGATTGGTCAGATA-- 1556
Query 1576 TATAGTGAAATATTCCTAGGGTTTAGCTATAGAAGATGAAA-A-AGAAAAAGAGTGTGAT 1633
|||||||| |||||| |||||||||||||||||||| || | | ||||||||||||||||
Sbjct 1557 TATAGTGAGATATTCATAGGGTTTAGCTATAGAAGAAGAGAGAGAGAAAAAGAGTGTGAT 1616
Query 1634 TAATTCTTGAGTGTTGAGAATAAGCAATAGGAGTAATTTTCTTCAGCACTTGT 1686
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 TAATTCAAGAGTGTTGAGAATAAGCAATAGGAGTAATTTTCTTCAGCACTTGT 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68790982470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5