BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19430.1
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492918 jgi|Araly1|492918|fgenesh2_kg.7__2351__AT4G19430.1 804 0.0
> Ahg492918 jgi|Araly1|492918|fgenesh2_kg.7__2351__AT4G19430.1
Length=657
Score = 804 bits (435), Expect = 0.0
Identities = 535/582 (92%), Gaps = 11/582 (2%)
Strand=Plus/Plus
Query 56 ATAGTCTCATGGCTACTAAATTCATCACCCTCACTCAAATCCACCGCCCTAAAACCCT-A 114
||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |
Sbjct 28 ATAGTCTTATGGCTACTAAATTCGTCATCCTCACTCAAATCCACCGCCCTAAAACCCTGA 87
Query 115 CTTTCCACCACAAAATCTCGTCGACGCAATAGTAACAAACCCAAACCATTCAAAACCATC 174
|||| ||| |||||||||||||| ||| | | |||||||||||||||| |||| |||
Sbjct 88 -TTTCAACCTCAAAATCTCGTCGATGCAGTCGAAACAAACCCAAACCATCCAAATCCAAA 146
Query 175 AGCGAAAACATGTTGAACAACGTCTTTTCTGGCAAAACGCTAACAGAAATCTACCATAAT 234
|||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 147 AGCGAAAACATGCTGACCAACGTCTTTTCTGGCAAAACGCTAACAGAAATCTATCACAAT 206
Query 235 AAAATAAATTCACACCCTCTTACTAATCCACTACTGTTTATTGAAGATCCGTCCGTAAAA 294
|| | |||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 207 AAGACAAATTCACACCCTCTTACTAATCCACTACTGTTTATTGAAGATCAGTCCTTAAAA 266
Query 295 GAAGAGGAGACGAATCAACAAGAACACGGGAAGGTCTCAAACAAAGATGGTAAGTCCATA 354
|| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||
Sbjct 267 GACGAGGAGACGAATCAACAAGAACATGGGAAGGTCTCAATCAAAGATGGTAAGTCGATA 326
Query 355 ACCGCGACCAAATACGGAGATTTGAGGCGTGATGTTGCTCGATTAAGCTTGTTGTGGTAC 414
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 327 ACCGCGAGCAAATACGGAGATTTGAGGCGTGACGTTGCTCGATTAAGCTTGTTGTGGTAC 386
Query 415 ATGAAATGTTCCATAAGCCATATATTAAGGAAGGCAAGAGCGTTTTACAATGAGTTTTGT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 ATGAAATGTTCCATAAGCCATATATTAAGGAAGGCAAGAGCGTTTTACAATGAGTTTTGT 446
Query 475 TGTGATACTTATGCTGAGAGTAACACTATGGCTGTGGTAGAGCCATATTTTTCTATTCCG 534
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 447 TGTGATACTTATGCTGAGAGTAACACTATGGCTGTGGTTGATCCATATTTTTCTATTCCG 506
Query 535 GTAATTAATTAATACCTCCAAATCGACGTAATTAAAAATTGTATTTA-T-A-A-TTAG-T 589
|||||||||||||| ||||||||| |||||||||| ||||||||||| | | | |||| |
Sbjct 507 GTAATTAATTAATATCTCCAAATCTACGTAATTAAGAATTGTATTTAATCATAATTAGCT 566
Query 590 A--AAA-TGTTTCATTAGTTTTGTTGTGTTGTAATGTGATGT 628
| ||| ||||||| | | |||||||||||||||| || |||
Sbjct 567 AGTAAAATGTTTCAGTGGCTTTGTTGTGTTGTAATATG-TGT 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25999829394
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5