BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G19460.1
Length=1697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492915 jgi|Araly1|492915|fgenesh2_kg.7__2348__AT4G19460.1 2416 0.0
> Ahg492915 jgi|Araly1|492915|fgenesh2_kg.7__2348__AT4G19460.1
Length=1587
Score = 2416 bits (1308), Expect = 0.0
Identities = 1481/1565 (95%), Gaps = 10/1565 (1%)
Strand=Plus/Plus
Query 31 TTTATGAATCCTTTAATTGAACAAACGGAACCAACACAACAACAGATTGTGAAGAAGAAA 90
||| |||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||
Sbjct 1 TTTGTGAATCCTTTAATTGAACAAGCGGAATCAACACAACAACACATTGTGAAGAAGAAA 60
Query 91 GAAAAAACAACAATGGCTTCACAAACCAAACTCAAGAAACCTAATTCTCATTTTAGCCTT 150
| |||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 61 G--AAAA-AACAATGGCTTCACAAACCAAAATCAAGAAACCTAATTCTCATTTTAGTCTT 117
Query 151 TGTACTTTCCTCTTCTTCACCGTCCTCTTTACCATACCGGctctctttctcctccgcacc 210
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 118 TGTACTTTCCTCTTCTTCACCGTCCTCTTTACCATCCCGGCTCTCTTCCTCCTCCGCACC 177
Query 211 tccacttgctcctcctccaccgctgcagtctcctcctcctcctctGACACAAACCAGCCA 270
||| |||||||||||||||| || ||||| | |||||||||||||||||||||||||||
Sbjct 178 TCCTCTTGCTCCTCCTCCACGGCCGCAGT-T--TCCTCCTCCTCTGACACAAACCAGCCA 234
Query 271 CCGTGGTCTGGCGACCTCCAAACCGCCCAATTTGCCTGGAACCGCCTTGATTTCTCCTTA 330
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 235 CCGTGGTCTGGCGACCTCCAAACCGCCCAATTTGCTTGGAACCGTCTTGATTTCTCCTTA 294
Query 331 ACCAACCCTCCTCCCAAAACACTAAAACTCGCTGTTTTCTCCCGGAAATGGCCCAC-GGG 389
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 295 ACCAACCCTCCTCCAAAAACCCTAAAACTCGCTGTTTTCTCCCGGAAATGGCCCACTGGG 354
Query 390 TCCCAATCCTGGCGGCATGGAACGCCACGCCTTCACTCTATACACCGCCTTAGCTCGCCG 449
|||||||| || |||||||||||||| || |||||||| ||||| || |||||||||||
Sbjct 355 -CCCAATCCCGGTGGCATGGAACGCCATGCTTTCACTCTCTACACTGCTTTAGCTCGCCG 413
Query 450 TGGACACCGTGTCCACGTTTTCACCTCTCCCTTAGACCAATCCCCTGAAACCAACAAAAT 509
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 414 TGGACACCGCGTCCACGTTTTCACCTCTCCTTTAGACCAATCCCCTGAAACCAACAAAAT 473
Query 510 CCCCCCTGTTTCCGACCAAATCATTTACCCTATAATCCATTCTCACGGCGACGCGGAGCC 569
|||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 474 CCCCCCTGTTTCCGACCAAATCCTATACCCTATAATCCATTCTCACGGCGACGCTGAGCC 533
Query 570 CGGAAAATGGCGGTACAACAAGGCATGGGAGCTTTACCAAGAAGAAAACAAGAAAGAACC 629
||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 534 CGGAAAATGGCGGTATAACAAAGCATGGGAGCTTTACCAAGAAGAAAACAAGAGAGAACC 593
Query 630 TTTCGATGCGGTTCACTCTGAAAGTGTTGCTTTACCTCACTGGATCGCCCGGGAGGTTCC 689
|||||| ||||||||||| ||||| || || |||||||||||||||||| ||||||||||
Sbjct 594 TTTCGACGCGGTTCACTCCGAAAGCGTGGCCTTACCTCACTGGATCGCCAGGGAGGTTCC 653
Query 690 AAACCTCGCTGTATCCTGGCACGGCATTGCGTTAGAGAGCTTACAATCAAGTATTTACCA 749
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 654 AAACCTCGCCGTATCCTGGCATGGCATTGCGTTAGAGAGCTTACAATCAAGCATTTACCA 713
Query 750 AGACCTGATCCGTAAACCAGACGAACCAAGATCACAAGGCTTCAATGCAAGTCTATACGG 809
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 714 AGACCTGATTCGGAAACCAGACGAACCAAGATCACAGGGCTTCAATGCAAGTCTATACGG 773
Query 810 TGCCGTGCTTCCCAAGATACTGGACGAAATCAGATTCTTCCACAACTACGCTCACCACAT 869
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 774 TGCCGTGCTTCCCAAGATACTCGACGAAATCAGATTCTTCCACAACTACGCTCACCACAT 833
Query 870 CGCTATCAGCGATAGCTGCGGAGAAATGCTAAGAGACGTTTACCAAATCCCTGAGAAAAG 929
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CGCAATCAGCGATAGCTGCGGAGAAATGCTAAGAGACGTTTACCAAATCCCTGAGAAAAG 893
Query 930 GGTTCATGTGATCCTCAATGGAGTCGACGAGAACGGATTCACATCAGACAAGAAGCTACG 989
|||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 894 GGTTCACGTGATTCTTAATGGAGTCGACGAAAACGGATTCACATCAGACAAGAAGCTACG 953
Query 990 TACTCTGTTTAGGTCAAAATTAGGGTTACCAGAAAACTCATCAGCGATTGTTTTAGGAGC 1049
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TTCTCTGTTTAGGTCAAAATTAGGGTTACCAGAAAACTCATCAGCGATTGTTTTAGGAGC 1013
Query 1050 TGCTGGGAGATTAGTCAAAGACAAAGGACATCCATTGCTCTTCGAAGCTTTCGCGAAAAT 1109
|||||||||||| || |||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 1014 TGCTGGGAGATTGGTTAAAGACAAAGGACATCCATTACTCTTCGAAGCTTTTGCGAAACT 1073
Query 1110 AATCCAAACGTATTCAAATGTTTACCTCGTAGTAGCTGGATCAGGGCCATGGGAGCAACG 1169
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1074 AATCCAAACATATTCAAATGTTTACCTAGTAGTAGCTGGATCAGGGCCATGGGAGCAACG 1133
Query 1170 TTACAAGGAATTAGGGGAAAAAGTTTCCATTTTGGGATCTCTAAACCCAAATGAGCTCAA 1229
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CTACAAAGAATTAGGCGAAAAAGTTTCCATTTTGGGATCTCTAAACCCAAATGAGCTCAA 1193
Query 1230 GGGTTTCTACAACGGGATCGATTTGTTCGTGAATCCAACGCTTAGACCACAAGGTCTTGA 1289
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1194 GGGTTTCTACAACGGGATCGATTTGTTCGTAAATCCAACGCTTAGACCACAAGGTCTTGA 1253
Query 1290 TTTAACGTTAATGGAAGCGATGTTGAGTGGTAAACCAGTGATGGCATCTAGGTACGCAAG 1349
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1254 TTTAACGTTAATGGAAGCGATGTTGAGTGGTAAACCAGTGATGGCGTCTAGGTACGCAAG 1313
Query 1350 CATAAAGAGGACTATAGTGGTGAATGATGAGTTTGGGTTTATGTTTGCGCCAAATGTGGA 1409
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1314 CATAAAGAGGAGTATAGTGGTGAATGATGAGTTTGGGTTTATGTTTGCGCCGAATGTGGA 1373
Query 1410 AGCTTTGACGGCGGTTATGGAGGTTGCTGTGGCTGAAGGAGCGGAGAGATTGGCGGAGAG 1469
||||||||||||||||||||||||||| || || |||||| | |||||||||||||||||
Sbjct 1374 AGCTTTGACGGCGGTTATGGAGGTTGCAGTTGCGGAAGGAACAGAGAGATTGGCGGAGAG 1433
Query 1470 AGGAAGGAAGTGTAAAGAGTATGCTGCGGAGATGTTTACGGCGAGTAAAATGGCTTTGGC 1529
||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1434 AGGGAGGAAGTGTAAAGAGTATGCGGCGGAGATGTTTACGGCTAGTAAGATGGCTTTGGC 1493
Query 1530 TTATGAGAGGCTTTTTCTTTGTATTAATGATCAGAAATTTTGTATTTACC-CTTAATTAG 1588
||||||||||||||||||||||||||| ||||||||||||||||| |||| || ||||||
Sbjct 1494 TTATGAGAGGCTTTTTCTTTGTATTAACGATCAGAAATTTTGTATCTACCACT-AATTAG 1552
Query 1589 TAAGA 1593
|||||
Sbjct 1553 TAAGA 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63648799395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5